Wall clock time and date at job start Tue Mar 31 2020 03:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86794 * 119.99723 * 2 1 4 4 H 1.48503 * 109.47234 * 269.99571 * 3 2 1 5 5 H 1.48503 * 109.47553 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99721 * 3 2 1 7 7 C 1.38771 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00002 * 168.88672 * 7 2 1 9 9 N 1.37093 * 120.00406 * 348.89047 * 7 2 1 10 10 C 1.36271 * 124.87677 * 338.51852 * 9 7 2 11 11 C 1.36250 * 109.70626 * 179.97438 * 10 9 7 12 12 C 1.46969 * 126.70437 * 179.74024 * 11 10 9 13 13 N 1.30039 * 120.00303 * 180.02562 * 12 11 10 14 14 N 1.40094 * 120.00425 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00476 * 179.97438 * 14 13 12 16 16 N 1.34776 * 119.99750 * 359.97438 * 15 14 13 17 17 S 1.71202 * 120.00348 * 179.97438 * 15 14 13 18 18 C 1.47576 * 106.59591 * 0.02562 * 11 10 9 19 19 C 1.39198 * 133.90385 * 179.97438 * 18 11 10 20 20 C 1.37900 * 119.68163 * 180.02562 * 19 18 11 21 21 C 1.38679 * 120.28770 * 359.96945 * 20 19 18 22 22 C 1.37927 * 120.60964 * 0.06407 * 21 20 19 23 23 C 1.38329 * 124.88054 * 158.49554 * 9 7 2 24 24 H 0.96996 * 120.00655 * 0.02562 * 1 2 3 25 25 H 1.08006 * 125.14597 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.99525 * 0.02562 * 12 11 10 27 27 H 0.97010 * 119.99566 * 359.97438 * 14 13 12 28 28 H 0.96998 * 120.00402 * 359.97438 * 16 15 14 29 29 H 0.97001 * 119.99713 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.15839 * 0.03878 * 19 18 11 31 31 H 1.07993 * 119.85602 * 180.02562 * 20 19 18 32 32 H 1.08002 * 119.69117 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.02783 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4962 2.0464 -1.4001 5 1 1.4461 2.6527 0.7000 6 1 3.5462 1.4402 0.7001 7 6 2.0086 -1.2018 0.0005 8 1 3.0735 -1.2106 -0.1797 9 7 1.3425 -2.3779 0.2298 10 6 0.1397 -2.4817 0.8618 11 6 -0.2367 -3.7899 0.9213 12 6 -1.4649 -4.3239 1.5263 13 7 -1.6945 -5.6038 1.5101 14 7 -2.8656 -6.1128 2.0864 15 6 -3.1038 -7.4392 2.0691 16 7 -2.2155 -8.2759 1.4969 17 16 -4.5346 -8.0613 2.7740 18 6 0.8333 -4.5665 0.2655 19 6 1.0275 -5.9220 0.0155 20 6 2.1677 -6.3392 -0.6384 21 6 3.1176 -5.4150 -1.0467 22 6 2.9377 -4.0692 -0.8045 23 6 1.7945 -3.6296 -0.1475 24 1 -0.4851 0.8400 -0.0004 25 1 -0.4292 -1.6525 1.2560 26 1 -2.1769 -3.6533 1.9845 27 1 -3.5051 -5.5105 2.4979 28 1 -1.4050 -7.9235 1.0973 29 1 -2.3871 -9.2306 1.4842 30 1 0.2887 -6.6434 0.3319 31 1 2.3211 -7.3901 -0.8342 32 1 4.0069 -5.7524 -1.5584 33 1 3.6838 -3.3576 -1.1262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409375871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:28 Heat of formation + Delta-G solvation = 103.054105 kcal Electronic energy + Delta-G solvation = -19356.203428 eV Core-core repulsion = 16315.925803 eV Total energy + Delta-G solvation = -3040.277626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.50583 -38.58664 -36.49775 -35.42521 -33.60582 -32.31075 -30.54947 -29.05897 -28.23504 -25.74485 -23.80904 -22.02131 -21.90598 -20.80736 -19.99088 -18.44597 -18.11583 -17.42697 -16.09244 -16.01739 -15.31305 -15.07562 -14.91793 -14.56925 -14.45868 -13.86705 -13.42520 -13.25842 -12.68109 -12.16719 -11.90717 -11.79627 -11.57074 -11.38569 -11.22964 -10.98735 -10.90974 -10.69007 -10.42982 -9.80706 -9.78368 -9.29467 -8.60149 -7.76849 -7.64978 -7.52911 -7.22279 -6.84674 -4.71251 1.19360 1.81423 1.87776 2.16522 2.53145 2.83142 2.84713 2.88942 2.90144 3.50897 3.55241 3.83471 4.36013 4.46786 4.72141 5.01225 5.43190 5.50862 5.58651 5.72115 6.00500 6.10016 6.19263 6.36681 6.50368 6.62922 6.70051 6.71530 6.74723 6.83015 7.12260 7.19870 7.26855 7.37220 7.56431 7.70368 8.05365 8.24382 8.51529 8.91266 9.88121 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.004177 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.919912 B = 6702.067902 C = 8106.554508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.340 4.340 8 H 0.113 0.887 9 N -0.267 5.267 10 C 0.139 3.861 11 C -0.254 4.254 12 C 0.234 3.766 13 N -0.354 5.354 14 N -0.532 5.532 15 C 0.615 3.385 16 N -0.790 5.790 17 S -0.681 6.681 18 C -0.063 4.063 19 C -0.083 4.083 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.099 4.099 23 C 0.045 3.955 24 H 0.287 0.713 25 H 0.181 0.819 26 H 0.112 0.888 27 H 0.407 0.593 28 H 0.410 0.590 29 H 0.426 0.574 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -3.188 -0.359 4.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.131 0.869 9 N 0.074 4.926 10 C -0.008 4.008 11 C -0.266 4.266 12 C 0.033 3.967 13 N -0.165 5.165 14 N -0.251 5.251 15 C 0.250 3.750 16 N -0.333 5.333 17 S -0.558 6.558 18 C -0.068 4.068 19 C -0.102 4.102 20 C -0.174 4.174 21 C -0.158 4.158 22 C -0.119 4.119 23 C -0.061 4.061 24 H 0.097 0.903 25 H 0.198 0.802 26 H 0.129 0.871 27 H 0.250 0.750 28 H 0.243 0.757 29 H 0.259 0.741 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.160 -3.969 -0.311 5.083 hybrid contribution 0.595 1.961 -0.214 2.060 sum 3.755 -2.008 -0.525 4.290 Atomic orbital electron populations 1.69822 1.06386 1.29823 1.41343 1.25567 0.95830 1.00945 0.94178 0.85630 0.79457 0.78832 0.79307 1.19394 1.19762 1.18575 1.19974 0.94465 0.81778 1.50607 0.86931 1.40160 1.14214 1.04076 1.34185 1.22266 0.88277 0.95729 0.94563 1.17867 0.96923 0.92211 1.19568 1.23565 0.93689 0.90037 0.89430 1.75026 1.02954 1.16367 1.22157 1.46243 1.19891 1.04991 1.53938 1.21707 0.89859 0.81724 0.81737 1.42816 1.22991 1.10392 1.57130 1.93632 1.18104 1.79841 1.64205 1.18773 0.94098 0.92465 1.01480 1.20300 0.96977 0.93697 0.99249 1.20703 0.95496 0.98399 1.02760 1.20532 0.99594 0.92229 1.03417 1.19986 0.95885 0.95462 1.00583 1.18480 0.97653 0.85433 1.04550 0.90263 0.80179 0.87071 0.75026 0.75661 0.74055 0.87014 0.87340 0.87065 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -18.54 10.86 55.49 0.60 -17.94 16 2 C 0.05 0.96 5.34 -17.51 -0.09 0.87 16 3 Si 0.94 16.39 29.56 -169.99 -5.03 11.36 16 4 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 6 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 7 C -0.34 -7.57 9.89 -15.00 -0.15 -7.72 16 8 H 0.11 2.37 7.85 -52.48 -0.41 1.96 16 9 N -0.27 -5.93 2.90 -59.48 -0.17 -6.10 16 10 C 0.14 2.90 9.85 -16.29 -0.16 2.74 16 11 C -0.25 -4.89 6.27 -103.27 -0.65 -5.54 16 12 C 0.23 3.75 10.98 -14.78 -0.16 3.59 16 13 N -0.35 -5.47 9.13 32.08 0.29 -5.17 16 14 N -0.53 -7.65 6.26 29.96 0.19 -7.47 16 15 C 0.62 9.15 8.13 -86.92 -0.71 8.44 16 16 N -0.79 -9.28 8.83 29.96 0.26 -9.01 16 17 S -0.68 -12.43 30.88 -107.50 -3.32 -15.75 16 18 C -0.06 -1.25 6.25 -104.90 -0.66 -1.91 16 19 C -0.08 -1.45 9.81 -39.35 -0.39 -1.84 16 20 C -0.15 -2.45 10.03 -39.54 -0.40 -2.85 16 21 C -0.14 -2.24 10.02 -39.53 -0.40 -2.63 16 22 C -0.10 -1.85 9.93 -39.42 -0.39 -2.24 16 23 C 0.05 0.96 6.73 -83.83 -0.56 0.39 16 24 H 0.29 5.83 8.31 -40.82 -0.34 5.49 16 25 H 0.18 3.70 6.35 -52.48 -0.33 3.37 16 26 H 0.11 1.47 8.03 -52.49 -0.42 1.04 16 27 H 0.41 5.37 8.63 -182.59 -1.58 3.79 16 28 H 0.41 4.64 7.33 -40.82 -0.30 4.34 16 29 H 0.43 4.11 8.81 -40.82 -0.36 3.75 16 30 H 0.11 1.75 6.69 -52.49 -0.35 1.40 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -26.73 309.16 -11.38 -38.11 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -4.16 Total: 16.00 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.71 Total: -8.69 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 1.18 Total: -45.69 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Atomic # 16 Polarization: -12.43 SS G_CDS: -3.32 Total: -15.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.73 -11.38 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409375871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.165 kcal (2) G-P(sol) polarization free energy of solvation -26.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds