Wall clock time and date at job start Tue Mar 31 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47172 * 205.25828 * 3 2 1 5 5 C 1.36938 * 119.99859 * 273.31616 * 4 3 2 6 6 H 1.07998 * 120.00016 * 187.22151 * 5 4 3 7 7 C 1.38817 * 119.99987 * 7.22063 * 5 4 3 8 8 N 1.31614 * 120.00181 * 25.61635 * 7 5 4 9 9 Si 1.86808 * 119.99797 * 205.61667 * 7 5 4 10 10 H 1.48498 * 109.46800 * 90.00212 * 9 7 5 11 11 H 1.48501 * 109.46933 * 209.99958 * 9 7 5 12 12 H 1.48500 * 109.47025 * 329.99659 * 9 7 5 13 13 S 1.65593 * 120.00299 * 93.31331 * 4 3 2 14 14 O 1.42098 * 104.28048 * 153.92929 * 13 4 3 15 15 O 1.42097 * 104.27890 * 26.07057 * 13 4 3 16 16 C 1.81405 * 104.45357 * 270.00090 * 13 4 3 17 17 C 1.52988 * 109.47532 * 179.97438 * 16 13 4 18 18 O 1.42902 * 109.47261 * 179.97438 * 17 16 13 19 19 C 1.42905 * 113.99975 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46898 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49583 * 243.62260 * 20 19 18 22 22 C 1.52993 * 59.99837 * 252.51098 * 21 20 19 23 23 H 1.09003 * 109.47132 * 85.25652 * 3 2 1 24 24 H 1.09004 * 109.47112 * 325.25886 * 3 2 1 25 25 H 0.96996 * 120.00017 * 180.02562 * 8 7 5 26 26 H 1.09003 * 109.46640 * 59.99581 * 16 13 4 27 27 H 1.08998 * 109.47064 * 300.00414 * 16 13 4 28 28 H 1.09003 * 109.47263 * 60.00252 * 17 16 13 29 29 H 1.08998 * 109.47521 * 300.00424 * 17 16 13 30 30 H 1.08999 * 109.47008 * 59.99959 * 19 18 17 31 31 H 1.09000 * 109.47111 * 299.99667 * 19 18 17 32 32 H 1.08999 * 115.55247 * 29.32613 * 20 19 18 33 33 H 1.09007 * 117.50040 * 0.02562 * 21 20 19 34 34 H 1.08997 * 117.50261 * 145.02173 * 21 20 19 35 35 H 1.09004 * 117.49919 * 252.50778 * 22 21 20 36 36 H 1.09001 * 117.50584 * 107.49133 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2500 0.5893 5 6 3.2588 2.3597 -0.1962 6 1 3.7268 3.2445 0.2095 7 6 2.8227 2.3474 -1.5140 8 7 1.8475 1.5415 -1.8770 9 14 3.6199 3.4748 -2.7723 10 1 4.7670 2.7764 -3.4061 11 1 2.6246 3.8372 -3.8131 12 1 4.1017 4.7070 -2.0978 13 16 3.4499 1.3203 2.2054 14 8 4.4174 2.3560 2.3075 15 8 3.7717 -0.0196 2.5523 16 6 1.8931 1.8241 2.9886 17 6 2.0928 1.9252 4.5020 18 8 0.8666 2.3227 5.1188 19 6 0.9448 2.4480 6.5402 20 6 -0.4176 2.8750 7.0902 21 6 -0.5044 4.2362 7.7833 22 6 -0.5734 2.9510 8.6103 23 1 2.9714 -0.0842 -1.0242 24 1 2.9718 -0.8437 0.5857 25 1 1.5431 1.5326 -2.7979 26 1 1.1219 1.0847 2.7727 27 1 1.5864 2.7939 2.5966 28 1 2.8641 2.6645 4.7182 29 1 2.3993 0.9553 4.8937 30 1 1.6925 3.1979 6.7982 31 1 1.2272 1.4889 6.9745 32 1 -1.2816 2.5485 6.5114 33 1 0.4089 4.8278 7.8470 34 1 -1.4256 4.8057 7.6604 35 1 -1.5400 2.6748 9.0316 36 1 0.2946 2.6966 9.2186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424210455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:23 Heat of formation + Delta-G solvation = -51.740202 kcal Electronic energy + Delta-G solvation = -20851.835852 eV Core-core repulsion = 17465.244171 eV Total energy + Delta-G solvation = -3386.591681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.41633 -36.83122 -36.59973 -35.91113 -34.74596 -34.52593 -31.87225 -31.13952 -27.59918 -26.82513 -24.29204 -22.76322 -22.53708 -20.73630 -18.69937 -18.00107 -17.34750 -16.64283 -16.28463 -16.06199 -15.48129 -15.04055 -14.79403 -14.63848 -14.27742 -13.82091 -13.37744 -13.20795 -13.00590 -12.44686 -11.88798 -11.76511 -11.61608 -11.52892 -11.47962 -11.38513 -11.14674 -11.04643 -10.93992 -10.90968 -10.64007 -10.61704 -10.33568 -10.27238 -10.17989 -9.96981 -9.62063 -9.41162 -8.57400 -6.89735 -4.17061 1.29004 3.01071 3.08417 3.12412 3.43839 3.50780 3.84443 3.87592 4.05176 4.31122 4.45995 4.65624 4.72882 4.84004 5.05904 5.12993 5.20180 5.24769 5.27413 5.41796 5.45529 5.48943 5.54182 5.58486 5.69273 5.90722 6.01057 6.05658 6.18055 6.41355 6.47141 6.78541 7.05539 7.35701 7.94959 8.32386 8.75439 8.78205 10.08991 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.020903 B = 0.004141 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.218571 B = 6760.355430 C = 6794.717274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.240 3.760 3 C 0.223 3.777 4 N -0.792 5.792 5 C -0.238 4.238 6 H 0.131 0.869 7 C 0.029 3.971 8 N -0.829 5.829 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.262 1.262 13 S 2.470 3.530 14 O -0.974 6.974 15 O -0.992 6.992 16 C -0.664 4.664 17 C 0.084 3.916 18 O -0.380 6.380 19 C 0.086 3.914 20 C -0.152 4.152 21 C -0.178 4.178 22 C -0.175 4.175 23 H 0.132 0.868 24 H 0.106 0.894 25 H 0.284 0.716 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 1.346 8.841 8.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.079 4.079 3 C 0.093 3.907 4 N -0.614 5.614 5 C -0.386 4.386 6 H 0.148 0.852 7 C -0.184 4.184 8 N -0.468 5.468 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.186 1.186 13 S 2.568 3.432 14 O -0.964 6.964 15 O -0.982 6.982 16 C -0.781 4.781 17 C 0.007 3.993 18 O -0.299 6.299 19 C 0.009 3.991 20 C -0.170 4.170 21 C -0.215 4.215 22 C -0.212 4.212 23 H 0.150 0.850 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.963 1.059 9.341 9.450 hybrid contribution -0.208 0.791 -0.493 0.954 sum -1.171 1.849 8.848 9.115 Atomic orbital electron populations 1.80892 1.13667 1.09812 1.11182 1.29566 0.95643 0.91638 0.91031 1.19010 0.81053 0.87403 1.03229 1.55307 1.71002 1.14373 1.20701 1.20322 1.30111 0.96777 0.91392 0.85180 1.25674 0.94864 0.98320 0.99540 1.69943 1.20699 1.35949 1.20234 0.85677 0.78925 0.79910 0.79034 1.19374 1.20651 1.18558 1.14511 0.80289 0.73993 0.74395 1.93376 1.59014 1.58538 1.85439 1.93356 1.84715 1.36616 1.83473 1.31587 1.31137 1.12154 1.03222 1.22080 0.86879 0.98664 0.91702 1.87997 1.33736 1.89581 1.18587 1.22024 0.95222 0.99576 0.82269 1.22155 0.99068 1.01184 0.94595 1.23065 1.03496 0.90773 1.04148 1.22964 1.03266 1.02072 0.92935 0.85047 0.87623 0.90479 0.87005 0.86232 0.92784 0.92891 0.93203 0.92941 0.86842 0.88639 0.88647 0.88480 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.19 18.54 42.15 0.78 -10.41 16 2 C 0.24 5.26 13.29 -20.76 -0.28 4.98 16 3 C 0.22 4.43 5.43 -6.83 -0.04 4.39 16 4 N -0.79 -17.08 2.81 -62.77 -0.18 -17.25 16 5 C -0.24 -5.30 9.42 -15.06 -0.14 -5.44 16 6 H 0.13 2.89 7.17 -52.49 -0.38 2.51 16 7 C 0.03 0.62 4.90 -17.43 -0.09 0.53 16 8 N -0.83 -18.48 8.99 55.49 0.50 -17.98 16 9 Si 0.94 17.17 29.62 -169.99 -5.04 12.14 16 10 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 13 S 2.47 52.51 5.39 -107.50 -0.58 51.93 16 14 O -0.97 -22.84 16.77 -57.54 -0.96 -23.80 16 15 O -0.99 -22.07 16.54 -57.54 -0.95 -23.03 16 16 C -0.66 -13.19 6.55 37.15 0.24 -12.95 16 17 C 0.08 1.52 5.95 37.15 0.22 1.74 16 18 O -0.38 -6.80 10.34 -35.23 -0.36 -7.17 16 19 C 0.09 1.18 6.22 37.16 0.23 1.42 16 20 C -0.15 -1.84 6.06 -90.62 -0.55 -2.39 16 21 C -0.18 -1.81 10.18 -26.73 -0.27 -2.08 16 22 C -0.18 -1.63 10.25 -26.74 -0.27 -1.91 16 23 H 0.13 2.52 6.47 -51.93 -0.34 2.19 16 24 H 0.11 1.86 6.84 -51.93 -0.36 1.50 16 25 H 0.28 6.05 8.31 -40.82 -0.34 5.71 16 26 H 0.11 2.27 8.14 -51.92 -0.42 1.85 16 27 H 0.12 2.40 8.14 -51.92 -0.42 1.98 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.62 7.88 -51.93 -0.41 0.22 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.10 0.92 8.03 -51.93 -0.42 0.51 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -28.47 326.54 -7.64 -36.12 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.83 Total: 6.25 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.94 Total: -11.71 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.10 Total: -45.65 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.28 Total: -54.00 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.04 Total: 12.14 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.58 Total: 51.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.47 -7.64 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424210455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.624 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds