Wall clock time and date at job start Tue Mar 31 2020 03:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 O 1.42898 * 109.47228 * 60.00083 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 9 7 14 14 C 1.35819 * 119.62319 * 269.72315 * 13 12 9 15 15 C 1.35439 * 120.68185 * 179.76000 * 14 13 12 16 16 Cl 1.73594 * 120.03922 * 180.23534 * 15 14 13 17 17 C 1.40262 * 119.92125 * 0.51639 * 15 14 13 18 18 C 1.36394 * 119.26842 * 359.74291 * 17 15 14 19 19 N 1.48005 * 120.33794 * 180.02562 * 18 17 15 20 20 O 1.21803 * 120.00381 * 359.97438 * 19 18 17 21 21 O 1.21801 * 120.00345 * 179.97438 * 19 18 17 22 22 C 1.34659 * 119.62127 * 90.00069 * 13 12 9 23 23 O 1.22067 * 119.97377 * 359.97438 * 22 13 12 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 0.96698 * 113.99738 * 60.00140 * 11 9 7 26 26 H 1.09000 * 109.46887 * 300.00372 * 12 9 7 27 27 H 1.08998 * 109.46846 * 59.99549 * 12 9 7 28 28 H 1.08003 * 119.66324 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.36044 * 179.76645 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 7 1.5129 -4.9308 0.0024 14 6 1.1817 -5.5142 1.1834 15 6 0.5005 -6.6845 1.2090 16 17 0.0805 -7.4124 2.7279 17 6 0.1401 -7.3107 0.0068 18 6 0.4786 -6.7252 -1.1777 19 7 0.1097 -7.3651 -2.4603 20 8 -0.4989 -8.4202 -2.4617 21 8 0.4146 -6.8366 -3.5144 22 6 1.1807 -5.5081 -1.1679 23 8 1.4896 -4.9736 -2.2209 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9225 -2.5300 -1.9975 26 1 2.8727 -3.6046 -0.8877 27 1 2.8714 -3.6038 0.8922 28 1 1.4606 -5.0378 2.1117 29 1 -0.3998 -8.2460 0.0189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436475248.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:24 Heat of formation + Delta-G solvation = -62.203627 kcal Electronic energy + Delta-G solvation = -20805.789932 eV Core-core repulsion = 17145.034627 eV Total energy + Delta-G solvation = -3660.755305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.039 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34186 -41.27131 -37.80169 -36.96282 -36.50299 -36.13133 -34.54749 -32.37740 -30.82782 -29.24834 -26.95372 -25.54827 -23.41340 -23.19890 -21.60031 -19.43545 -18.95341 -17.85682 -17.52792 -17.44881 -17.30896 -16.29483 -16.08619 -15.45485 -14.56129 -14.27906 -13.92271 -13.81741 -13.38256 -13.34169 -13.04692 -12.21422 -11.70593 -11.63168 -11.51963 -11.35563 -11.10593 -10.98387 -10.92072 -10.88174 -10.41255 -10.28213 -10.21727 -9.68743 -8.72205 -8.61816 -8.27104 -6.61608 -4.50258 -0.42563 1.09762 1.11898 1.24568 1.75148 2.41968 3.06662 3.27764 3.32617 3.47955 3.91164 4.02945 4.18360 4.31976 4.64260 4.78787 5.03767 5.15650 5.21841 5.46596 5.61922 5.73979 6.04304 6.36793 6.51524 6.94130 7.54015 7.62447 7.87794 8.03513 8.56542 8.81467 9.36851 10.78432 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.005262 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.168189 B = 5319.974982 C = 6432.385124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.657 4.657 8 H 0.056 0.944 9 C 0.206 3.794 10 H 0.055 0.945 11 O -0.577 6.577 12 C 0.058 3.942 13 N -0.461 5.461 14 C 0.228 3.772 15 C -0.188 4.188 16 Cl -0.027 7.027 17 C 0.089 3.911 18 C -0.181 4.181 19 N 0.055 4.945 20 O -0.193 6.193 21 O -0.122 6.122 22 C 0.537 3.463 23 O -0.472 6.472 24 H 0.285 0.715 25 H 0.367 0.633 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 -13.290 6.973 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.171 4.171 3 Si 0.900 3.100 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.695 4.695 8 H 0.075 0.925 9 C 0.148 3.852 10 H 0.072 0.928 11 O -0.382 6.382 12 C -0.061 4.061 13 N -0.166 5.166 14 C 0.089 3.911 15 C -0.221 4.221 16 Cl 0.001 6.999 17 C 0.065 3.935 18 C -0.271 4.271 19 N 0.572 4.428 20 O -0.397 6.397 21 O -0.346 6.346 22 C 0.332 3.668 23 O -0.346 6.346 24 H 0.096 0.904 25 H 0.214 0.786 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.206 0.794 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.809 -11.094 7.391 13.623 hybrid contribution 0.487 -1.942 -0.274 2.021 sum 3.296 -13.036 7.117 15.214 Atomic orbital electron populations 1.70634 1.06988 1.32386 1.41498 1.25851 0.96370 1.02622 0.92219 0.83506 0.74763 0.74863 0.76903 1.21227 1.21260 1.20728 1.22232 0.94560 0.91483 1.61207 0.92536 1.19928 0.88270 0.90313 0.86733 0.92787 1.86452 1.39235 1.96156 1.16385 1.23633 0.97026 0.79751 1.05648 1.46086 1.43864 1.21692 1.04952 1.22418 0.86857 0.89911 0.91870 1.19401 1.14732 0.99263 0.88670 1.98394 1.92593 1.82024 1.26866 1.21258 0.86311 0.97385 0.88578 1.21440 1.18911 1.01391 0.85355 1.42686 0.98473 0.99824 1.01821 1.94497 1.40889 1.10440 1.93872 1.94646 1.56310 1.65360 1.18269 1.15818 0.81950 0.84625 0.84376 1.91111 1.52254 1.63183 1.28100 0.90363 0.78601 0.87442 0.87949 0.79436 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 13.53 55.43 0.75 -24.54 15 2 C 0.04 1.05 5.40 -17.82 -0.10 0.95 15 3 Si 1.07 23.24 29.90 -169.99 -5.08 18.16 15 4 H -0.29 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.29 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.66 -16.24 8.76 -34.44 -0.30 -16.54 15 8 H 0.06 1.35 7.74 -52.49 -0.41 0.94 15 9 C 0.21 4.48 2.70 -27.88 -0.08 4.40 15 10 H 0.05 1.23 8.01 -51.93 -0.42 0.82 15 11 O -0.58 -13.90 10.81 -44.72 -0.48 -14.38 15 12 C 0.06 0.96 5.02 -4.04 -0.02 0.94 15 13 N -0.46 -6.84 2.54 -119.73 -0.30 -7.15 15 14 C 0.23 2.48 10.04 -16.79 -0.17 2.32 15 15 C -0.19 -1.94 6.29 -39.82 -0.25 -2.19 15 16 Cl -0.03 -0.23 28.95 -51.86 -1.50 -1.73 15 17 C 0.09 1.05 9.40 -39.49 -0.37 0.68 15 18 C -0.18 -2.88 6.87 -79.76 -0.55 -3.43 15 19 N 0.05 0.99 4.45 34.05 0.15 1.14 15 20 O -0.19 -3.25 18.47 -29.46 -0.54 -3.80 15 21 O -0.12 -2.45 17.44 -36.39 -0.63 -3.09 15 22 C 0.54 9.46 6.90 -15.45 -0.11 9.35 15 23 O -0.47 -9.92 13.55 -22.24 -0.30 -10.23 15 24 H 0.28 8.31 6.47 -40.82 -0.26 8.05 15 25 H 0.37 8.68 8.40 45.56 0.38 9.06 15 26 H 0.11 1.89 7.39 -51.93 -0.38 1.50 15 27 H 0.10 1.35 8.01 -51.93 -0.42 0.93 15 28 H 0.19 1.40 8.03 -52.48 -0.42 0.98 15 29 H 0.17 1.61 7.62 -52.49 -0.40 1.21 15 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -31.50 284.04 -6.73 -38.23 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -1.12 Total: 6.63 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.94 Total: -3.52 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.60 Total: -30.55 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.96 Total: -31.49 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.16 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.50 Total: -1.73 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.50 -6.73 -38.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436475248.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.977 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds