Wall clock time and date at job start Tue Mar 31 2020 03:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 O 1.42898 * 109.47228 * 60.00083 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 9 7 14 14 C 1.35819 * 119.62319 * 269.72315 * 13 12 9 15 15 C 1.35439 * 120.68185 * 179.76000 * 14 13 12 16 16 Cl 1.73594 * 120.03922 * 180.23534 * 15 14 13 17 17 C 1.40262 * 119.92125 * 0.51639 * 15 14 13 18 18 C 1.36394 * 119.26842 * 359.74291 * 17 15 14 19 19 N 1.48005 * 120.33794 * 180.02562 * 18 17 15 20 20 O 1.21803 * 120.00381 * 359.97438 * 19 18 17 21 21 O 1.21801 * 120.00345 * 179.97438 * 19 18 17 22 22 C 1.34659 * 119.62127 * 90.00069 * 13 12 9 23 23 O 1.22067 * 119.97377 * 359.97438 * 22 13 12 24 24 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 25 25 H 0.96698 * 113.99738 * 60.00140 * 11 9 7 26 26 H 1.09000 * 109.46887 * 300.00372 * 12 9 7 27 27 H 1.08998 * 109.46846 * 59.99549 * 12 9 7 28 28 H 1.08003 * 119.66324 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.36044 * 179.76645 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0018 13 7 1.5129 -4.9308 0.0024 14 6 1.1817 -5.5142 1.1834 15 6 0.5005 -6.6845 1.2090 16 17 0.0805 -7.4124 2.7279 17 6 0.1401 -7.3107 0.0068 18 6 0.4786 -6.7252 -1.1777 19 7 0.1097 -7.3651 -2.4603 20 8 -0.4989 -8.4202 -2.4617 21 8 0.4146 -6.8366 -3.5144 22 6 1.1807 -5.5081 -1.1679 23 8 1.4896 -4.9736 -2.2209 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9225 -2.5300 -1.9975 26 1 2.8727 -3.6046 -0.8877 27 1 2.8714 -3.6038 0.8922 28 1 1.4606 -5.0378 2.1117 29 1 -0.3998 -8.2460 0.0189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436475248.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:24 Heat of formation + Delta-G solvation = -83.066162 kcal Electronic energy + Delta-G solvation = -20806.694600 eV Core-core repulsion = 17145.034627 eV Total energy + Delta-G solvation = -3661.659972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.039 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.60167 -42.55339 -38.94511 -38.48506 -37.67860 -37.44395 -35.85238 -34.35512 -32.01269 -30.75843 -28.15406 -27.21711 -24.92875 -24.37338 -23.18015 -20.71443 -20.21764 -19.60838 -18.80463 -18.76820 -18.50295 -17.73655 -17.36163 -16.65082 -16.08713 -15.92893 -15.63402 -14.87535 -14.78270 -14.40523 -14.36878 -14.07674 -13.12267 -12.91041 -12.74870 -12.61435 -12.54085 -12.29347 -12.27608 -12.23060 -12.00198 -11.96375 -11.61756 -11.31621 -10.68587 -10.30803 -9.58278 -8.67286 -6.55182 -1.54556 -0.10446 -0.01531 0.09982 0.74091 1.25332 1.54666 1.62136 1.78513 1.86912 2.53516 2.84572 3.10523 3.11816 3.20749 3.54742 3.71339 3.77845 3.96994 4.03567 4.21215 4.48159 4.73440 5.05134 5.12254 5.37678 5.69311 6.05305 6.33847 6.47700 6.49922 6.93931 7.40041 8.71023 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.005262 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.168189 B = 5319.974982 C = 6432.385124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 1.116 2.884 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.294 1.294 7 C -0.656 4.656 8 H 0.066 0.934 9 C 0.198 3.802 10 H 0.045 0.955 11 O -0.593 6.593 12 C 0.075 3.925 13 N -0.464 5.464 14 C 0.237 3.763 15 C -0.174 4.174 16 Cl 0.004 6.996 17 C 0.117 3.883 18 C -0.212 4.212 19 N 0.059 4.941 20 O -0.151 6.151 21 O -0.209 6.209 22 C 0.527 3.473 23 O -0.523 6.523 24 H 0.268 0.732 25 H 0.363 0.637 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.232 0.768 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -14.546 10.114 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.216 4.216 3 Si 0.938 3.062 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.220 1.220 7 C -0.694 4.694 8 H 0.084 0.916 9 C 0.141 3.859 10 H 0.063 0.937 11 O -0.399 6.399 12 C -0.044 4.044 13 N -0.169 5.169 14 C 0.101 3.899 15 C -0.206 4.206 16 Cl 0.033 6.967 17 C 0.092 3.908 18 C -0.303 4.303 19 N 0.570 4.430 20 O -0.370 6.370 21 O -0.412 6.412 22 C 0.325 3.675 23 O -0.401 6.401 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.111 0.889 27 H 0.164 0.836 28 H 0.248 0.752 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.695 -12.269 10.468 16.546 hybrid contribution 0.154 -1.772 -0.962 2.022 sum 3.849 -14.040 9.507 17.387 Atomic orbital electron populations 1.70774 1.08255 1.31318 1.45109 1.27208 0.96328 1.06481 0.91547 0.82941 0.74115 0.71199 0.77909 1.19199 1.19438 1.22012 1.22663 0.95233 0.92657 1.58852 0.91622 1.19939 0.88753 0.91753 0.85472 0.93683 1.86425 1.40201 1.96401 1.16855 1.23224 0.95447 0.78632 1.07085 1.45852 1.44171 1.21312 1.05534 1.23177 0.85263 0.89777 0.91689 1.19500 1.13081 0.98673 0.89388 1.98428 1.92260 1.81452 1.24573 1.21639 0.84114 0.97621 0.87383 1.21334 1.21744 1.01977 0.85247 1.42926 0.97982 0.99712 1.02415 1.94424 1.38670 1.09844 1.94027 1.94672 1.60095 1.66807 1.19636 1.16179 0.81673 0.85074 0.84535 1.91078 1.54419 1.64578 1.30021 0.92168 0.78995 0.88915 0.83639 0.75202 0.78399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 13.53 21.45 0.29 -53.37 15 2 C -0.01 -0.67 5.40 84.65 0.46 -0.21 15 3 Si 1.12 46.24 29.90 68.60 2.05 48.29 15 4 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 5 H -0.27 -10.30 7.11 99.48 0.71 -9.60 15 6 H -0.29 -12.67 7.11 99.48 0.71 -11.97 15 7 C -0.66 -32.00 8.76 25.60 0.22 -31.77 15 8 H 0.07 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.20 8.58 2.70 29.85 0.08 8.66 15 10 H 0.05 2.03 8.01 -2.39 -0.02 2.01 15 11 O -0.59 -29.53 10.81 -139.91 -1.51 -31.04 15 12 C 0.08 2.36 5.02 86.38 0.43 2.80 15 13 N -0.46 -12.99 2.54 -650.86 -1.66 -14.65 15 14 C 0.24 4.25 10.04 83.43 0.84 5.09 15 15 C -0.17 -2.88 6.29 22.11 0.14 -2.74 15 16 Cl 0.00 0.05 28.95 -2.72 -0.08 -0.03 15 17 C 0.12 2.39 9.40 22.33 0.21 2.60 15 18 C -0.21 -6.63 6.87 36.50 0.25 -6.38 15 19 N 0.06 2.15 4.45 -46.17 -0.21 1.94 15 20 O -0.15 -4.93 18.47 18.88 0.35 -4.58 15 21 O -0.21 -9.09 17.44 25.51 0.44 -8.64 15 22 C 0.53 18.76 6.90 84.81 0.59 19.34 15 23 O -0.52 -23.25 13.55 20.38 0.28 -22.97 15 24 H 0.27 16.11 6.47 -92.70 -0.60 15.51 15 25 H 0.36 18.18 8.40 -74.06 -0.62 17.56 15 26 H 0.09 3.24 7.39 -2.39 -0.02 3.22 15 27 H 0.15 3.27 8.01 -2.39 -0.02 3.25 15 28 H 0.23 2.11 8.03 -2.91 -0.02 2.09 15 29 H 0.20 2.89 7.62 -2.91 -0.02 2.87 15 Total: -1.00 -73.13 284.04 3.95 -69.18 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.77 Total: 18.48 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 3.22 Total: -2.61 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -1.57 Total: -66.07 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -0.44 Total: -67.24 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.05 Total: 48.29 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -73.13 3.95 -69.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436475248.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.886 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds