Wall clock time and date at job start Tue Mar 31 2020 03:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00439 * 2 1 4 4 C 1.52997 * 109.47363 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47269 * 65.00170 * 4 3 2 6 6 C 1.42896 * 114.00186 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.50409 * 330.07808 * 6 5 4 8 8 C 1.53123 * 109.50442 * 210.00275 * 6 5 4 9 9 C 1.53118 * 109.15585 * 297.67386 * 8 6 5 10 10 H 1.09002 * 109.53946 * 62.30558 * 9 8 6 11 11 C 1.53003 * 109.50209 * 182.40456 * 9 8 6 12 12 O 1.42900 * 109.47403 * 184.80102 * 11 9 8 13 13 C 1.53036 * 109.28007 * 302.34276 * 9 8 6 14 14 N 1.46846 * 109.52162 * 59.18140 * 13 9 8 15 15 C 1.46909 * 111.00243 * 174.15828 * 14 13 9 16 16 C 1.52999 * 109.47025 * 170.00251 * 15 14 13 17 17 C 1.50706 * 109.46778 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99650 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00170 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47249 * 59.99923 * 21 19 17 23 23 H 1.48505 * 109.47266 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47330 * 299.99886 * 21 19 17 25 25 C 1.46846 * 111.19997 * 298.26076 * 14 13 9 26 26 H 1.09006 * 109.47268 * 59.99596 * 1 2 3 27 27 H 1.09004 * 109.47556 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47128 * 299.99686 * 1 2 3 29 29 H 1.09000 * 109.47083 * 60.00344 * 3 2 1 30 30 H 1.09000 * 109.46990 * 300.00408 * 3 2 1 31 31 H 1.08993 * 109.47383 * 305.00012 * 4 3 2 32 32 H 1.09002 * 109.47321 * 184.99922 * 4 3 2 33 33 H 1.08993 * 109.52379 * 177.76990 * 8 6 5 34 34 H 1.08996 * 109.52598 * 57.57423 * 8 6 5 35 35 H 1.09001 * 109.47262 * 304.80487 * 11 9 8 36 36 H 1.09006 * 109.47176 * 64.80249 * 11 9 8 37 37 H 0.96695 * 114.00333 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.46728 * 299.16963 * 13 9 8 39 39 H 1.09004 * 109.46553 * 179.19847 * 13 9 8 40 40 H 1.09000 * 109.47285 * 290.00268 * 15 14 13 41 41 H 1.09003 * 109.46644 * 50.00315 * 15 14 13 42 42 H 1.09000 * 109.47102 * 300.00128 * 16 15 14 43 43 H 1.08999 * 109.47491 * 59.99991 * 16 15 14 44 44 H 0.97004 * 119.99762 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.46373 * 181.76104 * 25 14 13 46 46 H 1.08998 * 109.45881 * 301.72191 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3811 0.4200 -1.3251 7 1 5.8783 1.2109 -0.7634 8 6 5.7986 0.4980 -2.7963 9 6 5.1434 -0.6521 -3.5661 10 1 4.0592 -0.5483 -3.5234 11 6 5.6028 -0.6173 -5.0251 12 8 4.9066 -1.6201 -5.7678 13 6 5.5546 -1.9831 -2.9326 14 7 5.1325 -2.0085 -1.5264 15 6 5.3868 -3.3240 -0.9240 16 6 5.1714 -3.2425 0.5886 17 6 5.4329 -4.5919 1.2066 18 1 5.7233 -5.4243 0.5828 19 6 5.3015 -4.7636 2.5683 20 7 4.9484 -3.7497 3.3279 21 14 5.6250 -6.4363 3.3343 22 1 7.0244 -6.8466 3.0544 23 1 5.4160 -6.3573 4.8024 24 1 4.6911 -7.4350 2.7550 25 6 5.7854 -0.9420 -0.7566 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8514 0.5681 0.8409 32 1 3.9786 2.1764 0.0889 33 1 6.8828 0.4160 -2.8721 34 1 5.4740 1.4495 -3.2172 35 1 5.3891 0.3635 -5.4500 36 1 6.6749 -0.8083 -5.0731 37 1 5.1481 -1.6554 -6.7035 38 1 6.6376 -2.0929 -2.9887 39 1 5.0784 -2.8035 -3.4697 40 1 4.7017 -4.0572 -1.3496 41 1 6.4142 -3.6249 -1.1290 42 1 5.8565 -2.5094 1.0142 43 1 4.1440 -2.9416 0.7936 44 1 4.8555 -3.8706 4.2858 45 1 5.4769 -1.0062 0.2868 46 1 6.8673 -1.0566 -0.8229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447381090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:36 Heat of formation + Delta-G solvation = -143.188851 kcal Electronic energy + Delta-G solvation = -24443.583079 eV Core-core repulsion = 20947.365116 eV Total energy + Delta-G solvation = -3496.217963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.43833 -37.80226 -36.86725 -36.11970 -33.91428 -32.42905 -30.78733 -29.21622 -29.01015 -26.04315 -25.61408 -25.01845 -22.65799 -22.32122 -21.86505 -19.68369 -19.27346 -17.35479 -16.53361 -16.44258 -16.32354 -15.51659 -15.32968 -15.06674 -14.77415 -14.65074 -14.42588 -14.03120 -13.35413 -13.29066 -13.24909 -12.85903 -12.59448 -12.34309 -12.08146 -11.81425 -11.70100 -11.52731 -11.10491 -11.01178 -10.87116 -10.79047 -10.60912 -10.53895 -10.35121 -10.07838 -9.93265 -9.73949 -9.43830 -9.23751 -9.04805 -8.91984 -8.25132 -7.41180 -5.91971 -3.93485 3.38478 3.42180 3.45293 3.90745 4.02375 4.20626 4.48562 4.66488 4.97306 5.00366 5.18870 5.22229 5.28902 5.36134 5.41409 5.43901 5.46044 5.49621 5.55779 5.60038 5.64202 5.66811 5.80173 5.86040 5.89264 5.96337 6.01881 6.05926 6.16547 6.37964 6.47583 6.53672 6.69803 6.71794 7.08055 7.39955 7.57163 7.63466 7.68709 7.79443 7.97896 8.00589 8.19716 8.53691 9.13161 9.69315 11.19349 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.005278 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.410214 B = 5303.372453 C = 6876.241953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.068 3.932 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.095 3.905 7 H 0.059 0.941 8 C -0.108 4.108 9 C -0.080 4.080 10 H 0.094 0.906 11 C 0.082 3.918 12 O -0.568 6.568 13 C 0.068 3.932 14 N -0.522 5.522 15 C 0.064 3.936 16 C 0.024 3.976 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.031 3.969 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.373 0.627 38 H 0.018 0.982 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.028 0.972 44 H 0.260 0.740 45 H 0.095 0.905 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 13.796 -12.835 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.009 4.009 4 C -0.016 4.016 5 O -0.271 6.271 6 C 0.037 3.963 7 H 0.077 0.923 8 C -0.145 4.145 9 C -0.099 4.099 10 H 0.113 0.887 11 C 0.004 3.996 12 O -0.373 6.373 13 C -0.061 4.061 14 N -0.246 5.246 15 C -0.062 4.062 16 C -0.013 4.013 17 C -0.558 4.558 18 H 0.071 0.929 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.098 4.098 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.219 0.781 38 H 0.036 0.964 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.046 0.954 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.207 13.583 -12.181 18.378 hybrid contribution 1.342 -0.607 0.197 1.486 sum -0.866 12.976 -11.984 17.684 Atomic orbital electron populations 1.22707 0.81824 1.02820 0.99057 1.88146 1.18822 1.26473 1.95122 1.22471 0.92782 0.85822 0.99852 1.22515 0.93192 0.96631 0.89258 1.88022 1.20931 1.81672 1.36520 1.22101 0.82513 0.96176 0.95527 0.92324 1.21631 0.99738 0.98541 0.94621 1.21076 1.02801 0.94993 0.90995 0.88732 1.22249 0.94722 0.90173 0.92469 1.86561 1.67910 1.58047 1.24753 1.21996 0.96624 0.97145 0.90308 1.61875 1.57881 1.04421 1.00454 1.22298 0.97360 0.87892 0.98674 1.19210 0.97910 0.96685 0.87533 1.21178 1.46264 0.96056 0.92339 0.92904 1.24972 0.95366 0.96558 0.97339 1.69966 1.47946 1.30377 1.05022 0.86676 0.78680 0.84705 0.78021 1.20391 1.21338 1.20236 1.22664 0.95645 0.91219 1.00245 0.94602 0.89588 0.94626 0.92503 0.93151 0.91839 0.92746 0.91174 0.91491 0.93916 0.94113 0.78073 0.96351 0.90614 0.91989 0.96702 0.96564 0.95364 0.93079 0.88668 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.41 10.67 -40.08 -0.43 -6.84 16 3 C 0.07 0.93 6.32 37.16 0.23 1.16 16 4 C 0.06 0.89 6.13 37.16 0.23 1.12 16 5 O -0.35 -5.90 9.29 -40.08 -0.37 -6.28 16 6 C 0.10 1.44 2.94 -26.65 -0.08 1.36 16 7 H 0.06 0.76 7.79 -51.93 -0.40 0.35 16 8 C -0.11 -1.38 5.01 -26.61 -0.13 -1.51 16 9 C -0.08 -1.16 2.44 -90.54 -0.22 -1.38 16 10 H 0.09 1.63 7.80 -51.93 -0.41 1.22 16 11 C 0.08 0.94 6.43 37.16 0.24 1.18 16 12 O -0.57 -6.92 13.21 -35.23 -0.47 -7.39 16 13 C 0.07 1.17 4.59 -3.84 -0.02 1.15 16 14 N -0.52 -10.63 4.69 -234.67 -1.10 -11.73 16 15 C 0.06 1.49 5.21 -3.82 -0.02 1.47 16 16 C 0.02 0.65 4.22 -27.88 -0.12 0.53 16 17 C -0.52 -15.28 9.11 -34.44 -0.31 -15.60 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 21 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.03 0.57 4.51 -3.84 -0.02 0.56 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.06 7.88 -51.93 -0.41 0.66 16 32 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.37 2.61 9.12 45.56 0.42 3.02 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 1.38 7.83 -51.93 -0.41 0.98 16 40 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.01 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.02 0.46 6.21 -51.93 -0.32 0.13 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.10 2.04 5.55 -51.93 -0.29 1.76 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -34.69 365.62 -8.04 -42.73 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.70 Total: 0.24 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 0.80 Total: -6.78 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.36 Total: -38.41 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.27 Total: -20.51 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.69 -8.04 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447381090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.458 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds