Wall clock time and date at job start Tue Mar 31 2020 03:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00439 * 2 1 4 4 C 1.52997 * 109.47363 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47269 * 65.00170 * 4 3 2 6 6 C 1.42896 * 114.00186 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.50409 * 330.07808 * 6 5 4 8 8 C 1.53123 * 109.50442 * 210.00275 * 6 5 4 9 9 C 1.53118 * 109.15585 * 297.67386 * 8 6 5 10 10 H 1.09002 * 109.53946 * 62.30558 * 9 8 6 11 11 C 1.53003 * 109.50209 * 182.40456 * 9 8 6 12 12 O 1.42900 * 109.47403 * 184.80102 * 11 9 8 13 13 C 1.53036 * 109.28007 * 302.34276 * 9 8 6 14 14 N 1.46846 * 109.52162 * 59.18140 * 13 9 8 15 15 C 1.46909 * 111.00243 * 174.15828 * 14 13 9 16 16 C 1.52999 * 109.47025 * 170.00251 * 15 14 13 17 17 C 1.50706 * 109.46778 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99657 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99650 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00170 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47249 * 59.99923 * 21 19 17 23 23 H 1.48505 * 109.47266 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47330 * 299.99886 * 21 19 17 25 25 C 1.46846 * 111.19997 * 298.26076 * 14 13 9 26 26 H 1.09006 * 109.47268 * 59.99596 * 1 2 3 27 27 H 1.09004 * 109.47556 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47128 * 299.99686 * 1 2 3 29 29 H 1.09000 * 109.47083 * 60.00344 * 3 2 1 30 30 H 1.09000 * 109.46990 * 300.00408 * 3 2 1 31 31 H 1.08993 * 109.47383 * 305.00012 * 4 3 2 32 32 H 1.09002 * 109.47321 * 184.99922 * 4 3 2 33 33 H 1.08993 * 109.52379 * 177.76990 * 8 6 5 34 34 H 1.08996 * 109.52598 * 57.57423 * 8 6 5 35 35 H 1.09001 * 109.47262 * 304.80487 * 11 9 8 36 36 H 1.09006 * 109.47176 * 64.80249 * 11 9 8 37 37 H 0.96695 * 114.00333 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.46728 * 299.16963 * 13 9 8 39 39 H 1.09004 * 109.46553 * 179.19847 * 13 9 8 40 40 H 1.09000 * 109.47285 * 290.00268 * 15 14 13 41 41 H 1.09003 * 109.46644 * 50.00315 * 15 14 13 42 42 H 1.09000 * 109.47102 * 300.00128 * 16 15 14 43 43 H 1.08999 * 109.47491 * 59.99991 * 16 15 14 44 44 H 0.97004 * 119.99762 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.46373 * 181.76104 * 25 14 13 46 46 H 1.08998 * 109.45881 * 301.72191 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3811 0.4200 -1.3251 7 1 5.8783 1.2109 -0.7634 8 6 5.7986 0.4980 -2.7963 9 6 5.1434 -0.6521 -3.5661 10 1 4.0592 -0.5483 -3.5234 11 6 5.6028 -0.6173 -5.0251 12 8 4.9066 -1.6201 -5.7678 13 6 5.5546 -1.9831 -2.9326 14 7 5.1325 -2.0085 -1.5264 15 6 5.3868 -3.3240 -0.9240 16 6 5.1714 -3.2425 0.5886 17 6 5.4329 -4.5919 1.2066 18 1 5.7233 -5.4243 0.5828 19 6 5.3015 -4.7636 2.5683 20 7 4.9484 -3.7497 3.3279 21 14 5.6250 -6.4363 3.3343 22 1 7.0244 -6.8466 3.0544 23 1 5.4160 -6.3573 4.8024 24 1 4.6911 -7.4350 2.7550 25 6 5.7854 -0.9420 -0.7566 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8899 31 1 3.8514 0.5681 0.8409 32 1 3.9786 2.1764 0.0889 33 1 6.8828 0.4160 -2.8721 34 1 5.4740 1.4495 -3.2172 35 1 5.3891 0.3635 -5.4500 36 1 6.6749 -0.8083 -5.0731 37 1 5.1481 -1.6554 -6.7035 38 1 6.6376 -2.0929 -2.9887 39 1 5.0784 -2.8035 -3.4697 40 1 4.7017 -4.0572 -1.3496 41 1 6.4142 -3.6249 -1.1290 42 1 5.8565 -2.5094 1.0142 43 1 4.1440 -2.9416 0.7936 44 1 4.8555 -3.8706 4.2858 45 1 5.4769 -1.0062 0.2868 46 1 6.8673 -1.0566 -0.8229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447381090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:33 Heat of formation + Delta-G solvation = -171.281244 kcal Electronic energy + Delta-G solvation = -24444.801257 eV Core-core repulsion = 20947.365116 eV Total energy + Delta-G solvation = -3497.436141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.74482 -38.98215 -37.88966 -37.51799 -35.58763 -34.29057 -31.97758 -31.14123 -30.26575 -27.13787 -26.95342 -26.72874 -24.39927 -23.44798 -23.21607 -21.32169 -20.61671 -18.66728 -18.25545 -17.64669 -17.48302 -16.94513 -16.62366 -16.36801 -16.29582 -16.10414 -15.94536 -15.18988 -14.82429 -14.73533 -14.60110 -14.23765 -13.98489 -13.80143 -13.69583 -13.08584 -13.01272 -12.86826 -12.80288 -12.74170 -12.47584 -12.23897 -11.98808 -11.91584 -11.76202 -11.59875 -11.43311 -11.21198 -11.02601 -10.75974 -10.56351 -10.55662 -10.28914 -9.03418 -8.20318 -6.32436 1.37890 1.42259 1.49991 2.39490 2.75262 2.97074 3.11986 3.15332 3.38043 3.81555 3.89156 4.07249 4.15423 4.22228 4.27254 4.37100 4.39022 4.46958 4.48340 4.48760 4.53892 4.57950 4.58732 4.62231 4.68613 4.74408 4.80598 4.84053 4.85916 4.89902 4.98099 5.01304 5.06635 5.28023 5.42157 5.49603 5.65333 5.77371 6.09107 6.28226 6.35423 6.38841 6.55939 6.83082 7.02623 7.36192 8.91487 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.005278 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.410214 B = 5303.372453 C = 6876.241953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.064 3.936 4 C 0.056 3.944 5 O -0.373 6.373 6 C 0.094 3.906 7 H 0.086 0.914 8 C -0.100 4.100 9 C -0.076 4.076 10 H 0.063 0.937 11 C 0.087 3.913 12 O -0.595 6.595 13 C 0.069 3.931 14 N -0.538 5.538 15 C 0.079 3.921 16 C 0.041 3.959 17 C -0.549 4.549 18 H 0.057 0.943 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.269 1.269 25 C 0.032 3.968 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.395 0.605 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.000 1.000 43 H -0.016 1.016 44 H 0.264 0.736 45 H 0.053 0.947 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 14.866 -14.201 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.012 4.012 4 C -0.020 4.020 5 O -0.292 6.292 6 C 0.036 3.964 7 H 0.104 0.896 8 C -0.137 4.137 9 C -0.095 4.095 10 H 0.081 0.919 11 C 0.009 3.991 12 O -0.404 6.404 13 C -0.058 4.058 14 N -0.263 5.263 15 C -0.048 4.048 16 C 0.004 3.996 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.096 4.096 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.018 0.982 43 H 0.003 0.997 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.215 14.668 -13.584 20.028 hybrid contribution 0.987 -0.914 0.632 1.487 sum -0.228 13.754 -12.951 18.893 Atomic orbital electron populations 1.22849 0.79999 1.03025 1.00900 1.88077 1.21194 1.29065 1.95521 1.22683 0.91968 0.84769 1.01793 1.22697 0.94305 0.97651 0.87376 1.88007 1.21914 1.82143 1.37123 1.22238 0.82205 0.94247 0.97700 0.89577 1.21649 1.00895 0.98966 0.92227 1.21022 1.01091 0.93816 0.93543 0.91890 1.22203 0.95362 0.91327 0.90163 1.86506 1.68558 1.58547 1.26760 1.22042 0.96988 0.98802 0.87997 1.61820 1.59001 1.03164 1.02288 1.21957 0.97128 0.89829 0.95935 1.18943 0.94639 0.95609 0.90454 1.21587 1.47037 0.96874 0.93247 0.92446 1.25963 0.94600 1.01107 0.97773 1.70115 1.48359 1.32921 1.05489 0.85467 0.79155 0.79072 0.77122 1.18986 1.20464 1.19359 1.22645 0.95704 0.93136 0.98147 0.92679 0.90352 0.92728 0.90069 0.91387 0.95506 0.88742 0.88904 0.88680 0.91272 0.92341 0.75500 0.95267 0.92237 0.92989 0.96332 0.98213 0.99720 0.92730 0.92812 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.42 -15.18 10.67 -144.35 -1.54 -16.72 16 3 C 0.06 1.74 6.32 71.98 0.45 2.19 16 4 C 0.06 1.65 6.13 71.98 0.44 2.09 16 5 O -0.37 -12.47 9.29 -144.35 -1.34 -13.81 16 6 C 0.09 2.76 2.94 30.65 0.09 2.85 16 7 H 0.09 2.04 7.79 -2.39 -0.02 2.02 16 8 C -0.10 -2.26 5.01 30.67 0.15 -2.11 16 9 C -0.08 -2.08 2.44 -10.74 -0.03 -2.11 16 10 H 0.06 2.15 7.80 -2.39 -0.02 2.13 16 11 C 0.09 1.73 6.43 71.98 0.46 2.19 16 12 O -0.60 -13.36 13.21 -148.98 -1.97 -15.33 16 13 C 0.07 2.39 4.59 86.33 0.40 2.79 16 14 N -0.54 -22.81 4.69 -896.36 -4.20 -27.01 16 15 C 0.08 3.85 5.21 86.30 0.45 4.30 16 16 C 0.04 2.37 4.22 29.85 0.13 2.50 16 17 C -0.55 -33.44 9.11 25.60 0.23 -33.20 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 19 C 0.00 0.22 5.46 84.65 0.46 0.69 16 20 N -0.93 -58.83 13.29 21.45 0.28 -58.54 16 21 Si 0.97 46.06 29.54 68.60 2.03 48.08 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 25 C 0.03 1.24 4.51 86.32 0.39 1.63 16 26 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 0.96 7.88 -2.39 -0.02 0.95 16 32 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.40 4.57 9.12 -74.06 -0.68 3.89 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 2.21 7.83 -2.39 -0.02 2.19 16 40 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 42 H 0.00 -0.02 6.21 -2.39 -0.01 -0.03 16 43 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 45 H 0.05 2.50 5.55 -2.39 -0.01 2.48 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.64 365.62 -1.60 -81.24 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.26 Total: 16.29 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.88 Total: -14.20 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.92 Total: -85.56 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -4.85 Total: -45.85 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.64 -1.60 -81.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447381090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.045 kcal (2) G-P(sol) polarization free energy of solvation -79.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds