Wall clock time and date at job start Tue Mar 31 2020 04:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00084 * 2 1 4 4 N 1.46504 * 109.47334 * 137.47697 * 3 2 1 5 5 C 1.46499 * 120.00055 * 283.76618 * 4 3 2 6 6 C 1.50697 * 109.46833 * 269.99827 * 5 4 3 7 7 H 1.07998 * 120.00438 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99996 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99970 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00045 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47356 * 59.99720 * 10 8 6 12 12 H 1.48498 * 109.47165 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46708 * 299.99559 * 10 8 6 14 14 C 1.34771 * 119.99978 * 103.75944 * 4 3 2 15 15 O 1.21276 * 120.00197 * 181.46751 * 14 4 3 16 16 C 1.50697 * 120.00066 * 1.74442 * 14 4 3 17 17 S 1.81405 * 115.55176 * 282.09584 * 16 14 4 18 18 N 1.65593 * 104.44923 * 306.74586 * 17 16 14 19 19 O 1.42106 * 110.54103 * 58.37253 * 17 16 14 20 20 O 1.42100 * 110.54197 * 195.12166 * 17 16 14 21 21 C 1.52999 * 117.50151 * 136.42463 * 16 14 4 22 22 C 1.53000 * 117.49930 * 67.76470 * 16 14 4 23 23 H 1.07996 * 120.00427 * 180.02562 * 1 2 3 24 24 H 1.07995 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99861 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47244 * 17.47738 * 3 2 1 27 27 H 1.09000 * 109.47363 * 257.47474 * 3 2 1 28 28 H 1.09006 * 109.46969 * 29.99297 * 5 4 3 29 29 H 1.08995 * 109.47495 * 149.99431 * 5 4 3 30 30 H 0.96994 * 119.99785 * 179.97438 * 9 8 6 31 31 H 0.97004 * 120.00078 * 154.71535 * 18 17 16 32 32 H 0.97004 * 120.00485 * 334.71959 * 18 17 16 33 33 H 1.09003 * 117.49391 * 0.02562 * 21 16 14 34 34 H 1.09000 * 117.50350 * 145.02097 * 21 16 14 35 35 H 1.09000 * 117.50139 * 214.98234 * 22 16 14 36 36 H 1.09002 * 117.49936 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.1894 1.2190 0.9336 5 6 2.9529 1.3089 2.3765 6 6 3.0309 2.7502 2.8095 7 1 3.2365 3.5221 2.0826 8 6 2.8408 3.0835 4.1339 9 7 2.5909 2.1435 5.0192 10 14 2.9367 4.8701 4.6705 11 1 1.9054 5.6594 3.9503 12 1 2.6972 4.9613 6.1331 13 1 4.2835 5.4102 4.3544 14 6 4.4425 1.0571 0.4649 15 8 5.3714 0.9591 1.2385 16 6 4.6905 1.0039 -1.0206 17 16 4.2873 -0.5711 -1.8253 18 7 5.1153 -1.7065 -0.9493 19 8 2.9199 -0.8996 -1.6213 20 8 4.8705 -0.6333 -3.1196 21 6 5.8836 1.7909 -1.5663 22 6 4.4581 2.2864 -1.8219 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3963 2.1099 0.3086 27 1 2.4383 1.5083 -1.0032 28 1 1.9640 0.9130 2.6080 29 1 3.7092 0.7291 2.9055 30 1 2.4576 2.3780 5.9509 31 1 4.8027 -2.6245 -0.9269 32 1 5.9128 -1.4536 -0.4584 33 1 6.4896 2.3468 -0.8507 34 1 6.4262 1.3625 -2.4091 35 1 4.0633 2.1838 -2.8327 36 1 4.1255 3.1685 -1.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569817818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:05 Heat of formation + Delta-G solvation = -46.353073 kcal Electronic energy + Delta-G solvation = -22184.154729 eV Core-core repulsion = 18797.796651 eV Total energy + Delta-G solvation = -3386.358078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74171 -37.35353 -36.28464 -36.08002 -35.60123 -33.13647 -33.10197 -32.02837 -27.96865 -25.71879 -24.68776 -22.95851 -22.39186 -20.17195 -19.41888 -19.02669 -17.62038 -17.37790 -16.52634 -16.35338 -16.14850 -15.60557 -15.37024 -14.58234 -14.37787 -14.18118 -13.83685 -13.07923 -12.80360 -12.30513 -12.24157 -12.22071 -11.97084 -11.82241 -11.80693 -11.64183 -11.40608 -11.11503 -11.02613 -10.64681 -10.61199 -10.54267 -10.33148 -10.19748 -9.73153 -9.24966 -8.78136 -8.49148 -7.83353 -6.10501 -4.15902 0.16059 2.53197 2.78832 3.07155 3.17454 3.27251 3.32016 3.34653 3.58444 3.71197 4.20466 4.36927 4.44867 4.66492 4.79577 5.20137 5.25159 5.30484 5.48087 5.61332 5.64492 5.80772 5.84901 5.99241 6.14577 6.47297 6.93694 7.06311 7.20373 7.24600 7.34823 7.45130 7.84401 8.14375 8.21288 8.70556 8.89964 9.48818 10.97713 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.006001 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.585136 B = 4664.848960 C = 5192.371797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.129 4.129 3 C 0.129 3.871 4 N -0.577 5.577 5 C 0.247 3.753 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.277 1.277 14 C 0.557 3.443 15 O -0.523 6.523 16 C -0.683 4.683 17 S 2.648 3.352 18 N -1.244 6.244 19 O -0.939 6.939 20 O -0.961 6.961 21 C -0.096 4.096 22 C -0.111 4.111 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.419 0.581 32 H 0.419 0.581 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -4.001 -14.245 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.149 4.149 3 C 0.005 3.995 4 N -0.307 5.307 5 C 0.128 3.872 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.339 3.661 15 O -0.399 6.399 16 C -0.774 4.774 17 S 2.736 3.264 18 N -0.918 5.918 19 O -0.928 6.928 20 O -0.950 6.950 21 C -0.134 4.134 22 C -0.150 4.150 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.146 0.854 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.249 0.751 32 H 0.246 0.754 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.967 -4.096 -14.452 15.150 hybrid contribution 0.395 1.026 1.156 1.595 sum 2.362 -3.070 -13.297 13.849 Atomic orbital electron populations 1.23585 0.95829 1.01073 1.04408 1.23490 0.95942 0.99202 0.96246 1.20760 0.89243 0.96585 0.92894 1.48192 1.04235 1.68315 1.09920 1.19379 0.97977 0.97628 0.72207 1.21347 1.49469 0.92500 0.93643 0.92499 1.24923 0.94964 0.97720 0.96341 1.69918 1.47986 1.32483 1.02665 0.86549 0.78578 0.84690 0.77531 1.20216 1.21099 1.20238 1.18138 0.84097 0.79024 0.84840 1.90687 1.42215 1.50346 1.56658 1.32135 1.19290 1.18305 1.07661 1.03790 0.74435 0.74415 0.73714 1.52977 1.43695 1.24102 1.71016 1.93691 1.32659 1.81140 1.85305 1.93598 1.79101 1.85143 1.37142 1.22973 0.90068 0.98675 1.01709 1.22980 0.99920 0.92984 0.99094 0.88986 0.89184 0.85364 0.89656 0.90922 0.94223 0.93630 0.92549 0.75090 0.75366 0.86072 0.86122 0.86727 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 14.30 29.01 0.42 -2.84 16 2 C -0.13 -2.20 7.50 -36.03 -0.27 -2.47 16 3 C 0.13 2.23 5.36 -5.19 -0.03 2.20 16 4 N -0.58 -11.91 2.47 -176.44 -0.44 -12.34 16 5 C 0.25 6.30 5.12 -5.20 -0.03 6.28 16 6 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.56 10.76 6.83 -10.99 -0.08 10.68 16 15 O -0.52 -11.95 16.54 5.56 0.09 -11.86 16 16 C -0.68 -9.62 1.33 -91.77 -0.12 -9.75 16 17 S 2.65 34.75 5.91 -107.50 -0.64 34.12 16 18 N -1.24 -13.90 9.31 60.35 0.56 -13.33 16 19 O -0.94 -14.01 12.52 -57.54 -0.72 -14.73 16 20 O -0.96 -14.02 17.62 -57.54 -1.01 -15.03 16 21 C -0.10 -1.10 9.76 -26.69 -0.26 -1.36 16 22 C -0.11 -1.25 8.32 -26.69 -0.22 -1.47 16 23 H 0.09 1.29 8.06 -52.49 -0.42 0.86 16 24 H 0.09 1.29 7.92 -52.49 -0.42 0.88 16 25 H 0.13 2.24 6.05 -52.49 -0.32 1.92 16 26 H 0.09 1.49 7.89 -51.93 -0.41 1.08 16 27 H 0.07 1.05 4.65 -51.93 -0.24 0.81 16 28 H 0.04 1.05 7.94 -51.93 -0.41 0.63 16 29 H 0.05 1.30 7.40 -51.93 -0.38 0.91 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.42 3.83 8.96 -34.47 -0.31 3.52 16 32 H 0.42 4.38 8.94 -34.47 -0.31 4.07 16 33 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.12 1.11 7.86 -51.93 -0.41 0.70 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -34.64 318.10 -7.09 -41.74 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.44 Total: 7.60 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.01 Total: -12.03 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.86 Total: -51.00 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.64 Total: -41.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 34.75 SS G_CDS: -0.64 Total: 34.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.64 -7.09 -41.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569817818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.614 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds