Wall clock time and date at job start Tue Mar 31 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00084 * 2 1 4 4 N 1.46504 * 109.47334 * 137.47697 * 3 2 1 5 5 C 1.46499 * 120.00055 * 283.76618 * 4 3 2 6 6 C 1.50697 * 109.46833 * 269.99827 * 5 4 3 7 7 H 1.07998 * 120.00438 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99996 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99970 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00045 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47356 * 59.99720 * 10 8 6 12 12 H 1.48498 * 109.47165 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46708 * 299.99559 * 10 8 6 14 14 C 1.34771 * 119.99978 * 103.75944 * 4 3 2 15 15 O 1.21276 * 120.00197 * 181.46751 * 14 4 3 16 16 C 1.50697 * 120.00066 * 1.74442 * 14 4 3 17 17 S 1.81405 * 115.55176 * 282.09584 * 16 14 4 18 18 N 1.65593 * 104.44923 * 306.74586 * 17 16 14 19 19 O 1.42106 * 110.54103 * 58.37253 * 17 16 14 20 20 O 1.42100 * 110.54197 * 195.12166 * 17 16 14 21 21 C 1.52999 * 117.50151 * 136.42463 * 16 14 4 22 22 C 1.53000 * 117.49930 * 67.76470 * 16 14 4 23 23 H 1.07996 * 120.00427 * 180.02562 * 1 2 3 24 24 H 1.07995 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99861 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47244 * 17.47738 * 3 2 1 27 27 H 1.09000 * 109.47363 * 257.47474 * 3 2 1 28 28 H 1.09006 * 109.46969 * 29.99297 * 5 4 3 29 29 H 1.08995 * 109.47495 * 149.99431 * 5 4 3 30 30 H 0.96994 * 119.99785 * 179.97438 * 9 8 6 31 31 H 0.97004 * 120.00078 * 154.71535 * 18 17 16 32 32 H 0.97004 * 120.00485 * 334.71959 * 18 17 16 33 33 H 1.09003 * 117.49391 * 0.02562 * 21 16 14 34 34 H 1.09000 * 117.50350 * 145.02097 * 21 16 14 35 35 H 1.09000 * 117.50139 * 214.98234 * 22 16 14 36 36 H 1.09002 * 117.49936 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.1894 1.2190 0.9336 5 6 2.9529 1.3089 2.3765 6 6 3.0309 2.7502 2.8095 7 1 3.2365 3.5221 2.0826 8 6 2.8408 3.0835 4.1339 9 7 2.5909 2.1435 5.0192 10 14 2.9367 4.8701 4.6705 11 1 1.9054 5.6594 3.9503 12 1 2.6972 4.9613 6.1331 13 1 4.2835 5.4102 4.3544 14 6 4.4425 1.0571 0.4649 15 8 5.3714 0.9591 1.2385 16 6 4.6905 1.0039 -1.0206 17 16 4.2873 -0.5711 -1.8253 18 7 5.1153 -1.7065 -0.9493 19 8 2.9199 -0.8996 -1.6213 20 8 4.8705 -0.6333 -3.1196 21 6 5.8836 1.7909 -1.5663 22 6 4.4581 2.2864 -1.8219 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3963 2.1099 0.3086 27 1 2.4383 1.5083 -1.0032 28 1 1.9640 0.9130 2.6080 29 1 3.7092 0.7291 2.9055 30 1 2.4576 2.3780 5.9509 31 1 4.8027 -2.6245 -0.9269 32 1 5.9128 -1.4536 -0.4584 33 1 6.4896 2.3468 -0.8507 34 1 6.4262 1.3625 -2.4091 35 1 4.0633 2.1838 -2.8327 36 1 4.1255 3.1685 -1.2747 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569817818.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:04 Heat of formation + Delta-G solvation = -73.396508 kcal Electronic energy + Delta-G solvation = -22185.327420 eV Core-core repulsion = 18797.796651 eV Total energy + Delta-G solvation = -3387.530769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19726 -38.47164 -37.47550 -37.34287 -37.01120 -35.02730 -34.08288 -33.64753 -29.88442 -27.09599 -26.32456 -24.24672 -23.67401 -21.47968 -20.75389 -20.14341 -18.95171 -18.61171 -18.38189 -17.57827 -17.37219 -17.11008 -16.55011 -16.28152 -15.90179 -15.46926 -15.08380 -14.57895 -14.26661 -14.14021 -13.42848 -13.41519 -13.30183 -13.12551 -13.07703 -12.93166 -12.90712 -12.67417 -12.61600 -12.26470 -12.12865 -11.92129 -11.71762 -11.59025 -11.27797 -10.81996 -10.64655 -10.07913 -9.56643 -8.23577 -6.38272 -0.89887 1.36596 1.39468 1.40502 1.47208 1.52851 1.73761 2.12016 2.24831 2.38973 2.57084 3.05562 3.08127 3.38335 3.52570 3.76176 4.17669 4.23163 4.36182 4.46599 4.48469 4.74741 4.85651 4.96702 4.99670 5.14768 5.17270 5.23146 5.44929 5.73165 5.94180 6.02201 6.05241 6.23886 6.57640 6.70374 7.15926 7.34462 8.83958 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.006001 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.585136 B = 4664.848960 C = 5192.371797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.127 3.873 4 N -0.584 5.584 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.967 3.033 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.556 3.444 15 O -0.567 6.567 16 C -0.699 4.699 17 S 2.672 3.328 18 N -1.242 6.242 19 O -0.955 6.955 20 O -0.968 6.968 21 C -0.085 4.085 22 C -0.102 4.102 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.024 0.976 29 H 0.005 0.995 30 H 0.267 0.733 31 H 0.428 0.572 32 H 0.423 0.577 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 -2.915 -16.156 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C 0.005 3.995 4 N -0.313 5.313 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.341 3.659 15 O -0.447 6.447 16 C -0.789 4.789 17 S 2.759 3.241 18 N -0.919 5.919 19 O -0.945 6.945 20 O -0.957 6.957 21 C -0.123 4.123 22 C -0.140 4.140 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.139 0.861 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.076 0.924 31 H 0.260 0.740 32 H 0.251 0.749 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.743 -3.014 -16.403 16.769 hybrid contribution 0.461 0.626 1.739 1.905 sum 2.204 -2.388 -14.664 15.020 Atomic orbital electron populations 1.23834 0.95408 1.02389 1.02104 1.23464 0.96596 0.98735 0.98429 1.20943 0.88305 0.96801 0.93439 1.48108 1.06044 1.68691 1.08472 1.18796 0.95571 0.96130 0.75267 1.21653 1.49337 0.93325 0.94071 0.92444 1.25840 0.94406 1.02298 0.96401 1.70045 1.48789 1.34747 1.03031 0.85474 0.78799 0.79228 0.77346 1.18602 1.20517 1.20093 1.18762 0.82820 0.77291 0.87013 1.90655 1.43355 1.51958 1.58727 1.31985 1.22657 1.20485 1.03804 1.03056 0.73823 0.73872 0.73323 1.52867 1.43706 1.24448 1.70833 1.93668 1.33959 1.81277 1.85563 1.93593 1.79251 1.85171 1.37704 1.23178 0.89980 0.97380 1.01782 1.23319 0.99676 0.90929 1.00092 0.87498 0.88036 0.86092 0.90087 0.87943 0.95814 0.97666 0.92364 0.73992 0.74885 0.87058 0.83230 0.83076 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.88 14.30 67.77 0.97 -4.91 16 2 C -0.15 -5.10 7.50 25.64 0.19 -4.91 16 3 C 0.13 4.33 5.36 85.63 0.46 4.79 16 4 N -0.58 -24.53 2.47 -830.52 -2.06 -26.58 16 5 C 0.26 14.01 5.12 85.63 0.44 14.44 16 6 C -0.55 -30.68 9.39 25.60 0.24 -30.44 16 7 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.56 5.46 84.66 0.46 1.02 16 9 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 10 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.56 21.68 6.83 87.66 0.60 22.28 16 15 O -0.57 -26.80 16.54 -3.02 -0.05 -26.85 16 16 C -0.70 -18.69 1.33 -11.54 -0.02 -18.71 16 17 S 2.67 65.50 5.91 -56.49 -0.33 65.17 16 18 N -1.24 -26.65 9.31 37.02 0.34 -26.31 16 19 O -0.96 -27.20 12.52 -127.65 -1.60 -28.79 16 20 O -0.97 -25.62 17.62 -127.65 -2.25 -27.87 16 21 C -0.09 -1.76 9.76 30.62 0.30 -1.46 16 22 C -0.10 -2.01 8.32 30.62 0.25 -1.75 16 23 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 24 H 0.10 2.73 7.92 -2.91 -0.02 2.71 16 25 H 0.12 4.22 6.05 -2.91 -0.02 4.20 16 26 H 0.08 2.79 7.89 -2.38 -0.02 2.77 16 27 H 0.10 2.79 4.65 -2.39 -0.01 2.78 16 28 H 0.02 1.32 7.94 -2.38 -0.02 1.30 16 29 H 0.01 0.32 7.40 -2.39 -0.02 0.30 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.43 7.48 8.96 -96.74 -0.87 6.61 16 32 H 0.42 8.62 8.94 -96.74 -0.86 7.75 16 33 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 34 H 0.15 2.22 7.86 -2.39 -0.02 2.20 16 35 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -75.80 318.10 -0.34 -76.14 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.61 Total: 23.84 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.90 Total: -19.63 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -1.43 Total: -107.94 kcal Atomic # 8 Polarization: -79.62 SS G_CDS: -3.90 Total: -83.52 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 65.50 SS G_CDS: -0.33 Total: 65.17 kcal Total: -75.80 -0.34 -76.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569817818.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.744 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds