Wall clock time and date at job start Tue Mar 31 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 H 1.08996 * 109.46999 * 304.30010 * 3 2 1 5 5 C 1.50694 * 109.47110 * 184.29699 * 3 2 1 6 6 H 1.07999 * 120.00391 * 240.00018 * 5 3 2 7 7 C 1.37884 * 120.00104 * 59.72787 * 5 3 2 8 8 N 1.31518 * 119.99787 * 0.27488 * 7 5 3 9 9 Si 1.86800 * 120.00085 * 180.27402 * 7 5 3 10 10 H 1.48497 * 109.47373 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47048 * 120.00140 * 9 7 5 12 12 H 1.48503 * 109.46810 * 240.00054 * 9 7 5 13 13 N 1.46904 * 109.46668 * 64.29837 * 3 2 1 14 14 C 1.46903 * 110.99715 * 205.79160 * 13 3 2 15 15 C 1.52999 * 109.46942 * 174.88583 * 14 13 3 16 16 H 1.08997 * 109.47118 * 59.99688 * 15 14 13 17 17 O 1.42905 * 109.46825 * 299.99889 * 15 14 13 18 18 C 1.52995 * 109.46921 * 180.02562 * 15 14 13 19 19 O 1.42903 * 109.47154 * 184.99980 * 18 15 14 20 20 C 1.42903 * 114.00089 * 180.02562 * 19 18 15 21 21 C 1.53174 * 109.53985 * 269.55236 * 20 19 18 22 22 C 1.53095 * 109.16138 * 183.15487 * 21 20 19 23 23 O 1.42903 * 109.41716 * 57.60634 * 22 21 20 24 24 C 1.42894 * 114.09790 * 298.84814 * 23 22 21 25 25 C 1.53092 * 109.41903 * 61.15439 * 24 23 22 26 26 H 1.08996 * 109.46962 * 294.09310 * 1 2 3 27 27 H 1.08992 * 109.47539 * 54.10032 * 1 2 3 28 28 H 1.09002 * 109.46757 * 174.09723 * 1 2 3 29 29 H 1.09004 * 109.47161 * 240.00326 * 2 1 3 30 30 H 1.09002 * 109.47182 * 120.00562 * 2 1 3 31 31 H 0.96991 * 120.00186 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99949 * 81.84159 * 13 3 2 33 33 H 1.09005 * 109.47053 * 294.88121 * 14 13 3 34 34 H 1.08995 * 109.47088 * 54.88134 * 14 13 3 35 35 H 0.96703 * 114.00056 * 299.99890 * 17 15 14 36 36 H 1.09002 * 109.47520 * 304.99600 * 18 15 14 37 37 H 1.09000 * 109.47585 * 64.99477 * 18 15 14 38 38 H 1.09000 * 109.54447 * 29.81936 * 20 19 18 39 39 H 1.09001 * 109.52839 * 303.05864 * 21 20 19 40 40 H 1.09002 * 109.52385 * 63.24914 * 21 20 19 41 41 H 1.09002 * 109.47904 * 297.62453 * 22 21 20 42 42 H 1.08999 * 109.48181 * 177.59374 * 22 21 20 43 43 H 1.09000 * 109.47999 * 301.16652 * 24 23 22 44 44 H 1.09001 * 109.49147 * 181.14408 * 24 23 22 45 45 H 1.09007 * 109.52230 * 182.48804 * 25 24 23 46 46 H 1.08992 * 109.51987 * 62.29874 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9781 -0.8489 5 6 3.5432 1.4439 -0.1065 6 1 4.1395 1.8916 0.6748 7 6 4.1575 0.8685 -1.1986 8 7 3.4314 0.3233 -2.1500 9 14 6.0211 0.8634 -1.3268 10 1 6.6011 1.5350 -0.1361 11 1 6.5089 -0.5377 -1.3921 12 1 6.4347 1.5893 -2.5545 13 7 1.6368 2.1043 1.2480 14 6 1.5418 3.5589 1.0656 15 6 0.9986 4.1988 2.3448 16 1 1.6708 3.9798 3.1744 17 8 -0.2977 3.6687 2.6292 18 6 0.8990 5.7136 2.1546 19 8 0.5030 6.3232 3.3849 20 6 0.3791 7.7452 3.3157 21 6 1.7181 8.3943 3.6790 22 6 1.5549 9.9166 3.6789 23 8 0.5252 10.2840 4.5992 24 6 -0.7596 9.7444 4.2831 25 6 -0.6894 8.2153 4.3074 26 1 -0.3633 0.4195 0.9381 27 1 -0.3634 0.6025 -0.8324 28 1 -0.3633 -1.0223 -0.1057 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8635 -0.0818 -2.9180 32 1 2.2695 1.8748 1.9997 33 1 2.5305 3.9632 0.8487 34 1 0.8696 3.7778 0.2360 35 1 -0.9490 3.8269 1.9322 36 1 1.8693 6.1063 1.8504 37 1 0.1598 5.9354 1.3848 38 1 0.0929 8.0375 2.3054 39 1 2.0276 8.0613 4.6696 40 1 2.4723 8.1088 2.9456 41 1 1.2849 10.2532 2.6780 42 1 2.4935 10.3828 3.9785 43 1 -1.0599 10.0788 3.2900 44 1 -1.4885 10.0865 5.0177 45 1 -1.6571 7.8016 4.0234 46 1 -0.4286 7.8786 5.3107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571175219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:25 Heat of formation + Delta-G solvation = -160.885941 kcal Electronic energy + Delta-G solvation = -23438.300386 eV Core-core repulsion = 19941.315019 eV Total energy + Delta-G solvation = -3496.985367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88197 -38.24009 -36.82244 -35.51149 -32.73121 -32.44127 -31.45878 -31.21822 -29.25442 -26.57121 -24.83518 -24.01387 -23.67100 -22.39053 -21.33188 -20.54267 -19.43330 -17.23585 -16.87349 -16.59374 -16.40616 -15.94895 -15.65343 -15.16799 -14.87619 -14.57582 -14.36808 -13.91223 -13.56968 -13.38890 -13.24469 -12.92563 -12.68982 -12.52948 -11.94465 -11.83833 -11.66336 -11.49654 -11.29502 -11.18418 -11.14127 -10.89531 -10.68731 -10.66583 -10.47431 -10.18483 -10.05884 -9.88904 -9.61669 -9.57823 -9.32617 -9.04141 -8.41931 -7.25649 -6.03484 -4.17159 3.22325 3.31243 3.33880 3.35664 3.56802 4.35436 4.43093 4.47723 4.63234 4.71165 4.77648 4.86500 4.93162 5.05705 5.15534 5.19974 5.22016 5.30554 5.33947 5.42705 5.52297 5.58681 5.65476 5.69880 5.84157 5.87061 5.94314 6.34167 6.38195 6.45634 6.53081 6.73755 6.82953 7.09310 7.13020 7.20050 7.42410 7.57071 7.74616 8.02588 8.06622 8.11278 8.29937 8.62562 8.96216 9.50800 10.96211 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.003073 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.696088 B = 9108.515866 C =10177.715367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.040 3.960 15 C 0.115 3.885 16 H 0.098 0.902 17 O -0.541 6.541 18 C 0.031 3.969 19 O -0.368 6.368 20 C 0.087 3.913 21 C -0.180 4.180 22 C 0.064 3.936 23 O -0.383 6.383 24 C 0.064 3.936 25 C -0.153 4.153 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.367 0.633 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 16.755 8.446 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.307 5.307 14 C -0.091 4.091 15 C 0.055 3.945 16 H 0.116 0.884 17 O -0.344 6.344 18 C -0.047 4.047 19 O -0.287 6.287 20 C 0.029 3.971 21 C -0.218 4.218 22 C -0.013 4.013 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.191 4.191 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.213 0.787 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.496 16.366 9.029 20.138 hybrid contribution 1.959 0.330 -1.382 2.420 sum -5.537 16.696 7.647 19.180 Atomic orbital electron populations 1.21682 0.98901 0.98247 1.00464 1.21488 0.92198 0.99102 1.01658 1.19170 0.92651 0.91294 0.86142 0.95205 1.21920 0.92765 1.37992 1.05941 0.92840 1.24944 0.98014 0.94940 0.95652 1.69887 1.34816 1.37907 1.09640 0.86599 0.86022 0.77828 0.77894 1.19925 1.20882 1.21056 1.60783 1.55452 1.04763 1.09656 1.22335 0.99452 0.91859 0.95440 1.21935 0.86076 0.87691 0.98783 0.88372 1.86606 1.19923 1.80871 1.47036 1.23387 0.99228 0.95643 0.86433 1.88019 1.89232 1.18260 1.33149 1.22066 0.94457 0.82071 0.98497 1.22749 0.98735 0.96305 1.04029 1.22563 0.91705 0.93864 0.93173 1.87936 1.17762 1.72792 1.51717 1.22587 0.85557 0.92026 1.01130 1.22285 0.99495 0.96152 1.01130 0.93176 0.94627 0.95728 0.89235 0.95055 0.92901 0.85488 0.94654 0.91822 0.78726 0.92646 0.93130 0.92307 0.89989 0.90574 0.93116 0.88509 0.93084 0.88299 0.90084 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.72 37.16 0.36 -2.45 16 2 C -0.11 -2.54 5.44 -26.73 -0.15 -2.69 16 3 C 0.22 5.23 1.99 -68.86 -0.14 5.09 16 4 H 0.03 0.80 7.70 -51.93 -0.40 0.40 16 5 C -0.55 -14.51 8.47 -34.44 -0.29 -14.81 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -13.95 5.62 -107.95 -0.61 -14.56 16 14 C 0.04 0.70 5.17 -3.82 -0.02 0.68 16 15 C 0.12 1.73 3.50 -26.73 -0.09 1.64 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 17 O -0.54 -8.60 13.17 -40.10 -0.53 -9.13 16 18 C 0.03 0.39 5.39 37.15 0.20 0.59 16 19 O -0.37 -4.87 9.96 -40.10 -0.40 -5.27 16 20 C 0.09 0.90 2.70 -26.55 -0.07 0.83 16 21 C -0.18 -1.71 5.76 -26.59 -0.15 -1.87 16 22 C 0.06 0.53 6.84 37.21 0.25 0.78 16 23 O -0.38 -3.81 10.77 -35.23 -0.38 -4.18 16 24 C 0.06 0.50 6.84 37.20 0.25 0.76 16 25 C -0.15 -1.40 5.79 -26.59 -0.15 -1.55 16 26 H 0.05 1.01 7.90 -51.93 -0.41 0.60 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.33 6.87 8.46 -39.29 -0.33 6.54 16 33 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 35 H 0.37 4.71 9.05 45.56 0.41 5.13 16 36 H 0.06 0.66 7.99 -51.93 -0.42 0.24 16 37 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.69 7.99 -51.93 -0.42 0.28 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -29.66 367.12 -8.58 -38.24 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.72 Total: 8.89 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.09 Total: -11.27 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.02 Total: -38.64 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.31 Total: -18.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.66 -8.58 -38.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571175219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.642 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds