Wall clock time and date at job start Tue Mar 31 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 H 1.08996 * 109.46999 * 304.30010 * 3 2 1 5 5 C 1.50694 * 109.47110 * 184.29699 * 3 2 1 6 6 H 1.07999 * 120.00391 * 240.00018 * 5 3 2 7 7 C 1.37884 * 120.00104 * 59.72787 * 5 3 2 8 8 N 1.31518 * 119.99787 * 0.27488 * 7 5 3 9 9 Si 1.86800 * 120.00085 * 180.27402 * 7 5 3 10 10 H 1.48497 * 109.47373 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47048 * 120.00140 * 9 7 5 12 12 H 1.48503 * 109.46810 * 240.00054 * 9 7 5 13 13 N 1.46904 * 109.46668 * 64.29837 * 3 2 1 14 14 C 1.46903 * 110.99715 * 205.79160 * 13 3 2 15 15 C 1.52999 * 109.46942 * 174.88583 * 14 13 3 16 16 H 1.08997 * 109.47118 * 59.99688 * 15 14 13 17 17 O 1.42905 * 109.46825 * 299.99889 * 15 14 13 18 18 C 1.52995 * 109.46921 * 180.02562 * 15 14 13 19 19 O 1.42903 * 109.47154 * 184.99980 * 18 15 14 20 20 C 1.42903 * 114.00089 * 180.02562 * 19 18 15 21 21 C 1.53174 * 109.53985 * 269.55236 * 20 19 18 22 22 C 1.53095 * 109.16138 * 183.15487 * 21 20 19 23 23 O 1.42903 * 109.41716 * 57.60634 * 22 21 20 24 24 C 1.42894 * 114.09790 * 298.84814 * 23 22 21 25 25 C 1.53092 * 109.41903 * 61.15439 * 24 23 22 26 26 H 1.08996 * 109.46962 * 294.09310 * 1 2 3 27 27 H 1.08992 * 109.47539 * 54.10032 * 1 2 3 28 28 H 1.09002 * 109.46757 * 174.09723 * 1 2 3 29 29 H 1.09004 * 109.47161 * 240.00326 * 2 1 3 30 30 H 1.09002 * 109.47182 * 120.00562 * 2 1 3 31 31 H 0.96991 * 120.00186 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99949 * 81.84159 * 13 3 2 33 33 H 1.09005 * 109.47053 * 294.88121 * 14 13 3 34 34 H 1.08995 * 109.47088 * 54.88134 * 14 13 3 35 35 H 0.96703 * 114.00056 * 299.99890 * 17 15 14 36 36 H 1.09002 * 109.47520 * 304.99600 * 18 15 14 37 37 H 1.09000 * 109.47585 * 64.99477 * 18 15 14 38 38 H 1.09000 * 109.54447 * 29.81936 * 20 19 18 39 39 H 1.09001 * 109.52839 * 303.05864 * 21 20 19 40 40 H 1.09002 * 109.52385 * 63.24914 * 21 20 19 41 41 H 1.09002 * 109.47904 * 297.62453 * 22 21 20 42 42 H 1.08999 * 109.48181 * 177.59374 * 22 21 20 43 43 H 1.09000 * 109.47999 * 301.16652 * 24 23 22 44 44 H 1.09001 * 109.49147 * 181.14408 * 24 23 22 45 45 H 1.09007 * 109.52230 * 182.48804 * 25 24 23 46 46 H 1.08992 * 109.51987 * 62.29874 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9781 -0.8489 5 6 3.5432 1.4439 -0.1065 6 1 4.1395 1.8916 0.6748 7 6 4.1575 0.8685 -1.1986 8 7 3.4314 0.3233 -2.1500 9 14 6.0211 0.8634 -1.3268 10 1 6.6011 1.5350 -0.1361 11 1 6.5089 -0.5377 -1.3921 12 1 6.4347 1.5893 -2.5545 13 7 1.6368 2.1043 1.2480 14 6 1.5418 3.5589 1.0656 15 6 0.9986 4.1988 2.3448 16 1 1.6708 3.9798 3.1744 17 8 -0.2977 3.6687 2.6292 18 6 0.8990 5.7136 2.1546 19 8 0.5030 6.3232 3.3849 20 6 0.3791 7.7452 3.3157 21 6 1.7181 8.3943 3.6790 22 6 1.5549 9.9166 3.6789 23 8 0.5252 10.2840 4.5992 24 6 -0.7596 9.7444 4.2831 25 6 -0.6894 8.2153 4.3074 26 1 -0.3633 0.4195 0.9381 27 1 -0.3634 0.6025 -0.8324 28 1 -0.3633 -1.0223 -0.1057 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8635 -0.0818 -2.9180 32 1 2.2695 1.8748 1.9997 33 1 2.5305 3.9632 0.8487 34 1 0.8696 3.7778 0.2360 35 1 -0.9490 3.8269 1.9322 36 1 1.8693 6.1063 1.8504 37 1 0.1598 5.9354 1.3848 38 1 0.0929 8.0375 2.3054 39 1 2.0276 8.0613 4.6696 40 1 2.4723 8.1088 2.9456 41 1 1.2849 10.2532 2.6780 42 1 2.4935 10.3828 3.9785 43 1 -1.0599 10.0788 3.2900 44 1 -1.4885 10.0865 5.0177 45 1 -1.6571 7.8016 4.0234 46 1 -0.4286 7.8786 5.3107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571175219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:21 Heat of formation + Delta-G solvation = -182.766520 kcal Electronic energy + Delta-G solvation = -23439.249199 eV Core-core repulsion = 19941.315019 eV Total energy + Delta-G solvation = -3497.934180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.64942 -39.34445 -38.08570 -37.06382 -34.31892 -33.53591 -32.95437 -32.11778 -30.60871 -28.33838 -26.01049 -25.01390 -24.58481 -24.00660 -22.60599 -21.41488 -21.21948 -18.79458 -18.10168 -17.68386 -17.27120 -16.93550 -16.76191 -16.58599 -15.90648 -15.74616 -15.55029 -15.44831 -15.02574 -14.55081 -14.40052 -14.27621 -13.83413 -13.58997 -13.38471 -13.23440 -13.09687 -13.06116 -12.71474 -12.49273 -12.39813 -12.26961 -12.07383 -11.98745 -11.71858 -11.52942 -11.48472 -11.39114 -11.08621 -10.78591 -10.62141 -10.48343 -10.45648 -9.02681 -8.06443 -6.29463 1.36072 1.39521 1.48955 2.38163 2.44241 2.93488 3.12811 3.50996 3.66998 3.74318 3.85039 3.96812 4.00575 4.05428 4.16978 4.24644 4.27168 4.40826 4.45638 4.50529 4.59341 4.63306 4.68353 4.74659 4.77525 4.82214 4.89115 4.95645 5.03131 5.09123 5.12068 5.17766 5.21132 5.43946 5.51398 5.63056 5.76583 6.08927 6.18407 6.20363 6.22577 6.37865 6.77415 6.94684 7.01801 7.42338 8.89587 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.003073 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.696088 B = 9108.515866 C =10177.715367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.561 4.561 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.672 5.672 14 C 0.044 3.956 15 C 0.127 3.873 16 H 0.087 0.913 17 O -0.556 6.556 18 C 0.038 3.962 19 O -0.389 6.389 20 C 0.080 3.920 21 C -0.178 4.178 22 C 0.064 3.936 23 O -0.403 6.403 24 C 0.064 3.936 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.262 0.738 32 H 0.327 0.673 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.380 0.620 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 18.037 8.608 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.600 4.600 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.301 5.301 14 C -0.086 4.086 15 C 0.067 3.933 16 H 0.104 0.896 17 O -0.362 6.362 18 C -0.039 4.039 19 O -0.309 6.309 20 C 0.023 3.977 21 C -0.216 4.216 22 C -0.013 4.013 23 O -0.322 6.322 24 C -0.013 4.013 25 C -0.188 4.188 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.106 0.894 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.773 17.664 9.197 21.379 hybrid contribution 2.003 -0.055 -1.413 2.452 sum -5.770 17.609 7.784 20.099 Atomic orbital electron populations 1.21528 0.96284 0.99435 1.00705 1.21371 0.94519 0.98477 0.99867 1.18939 0.91456 0.91498 0.86672 0.97954 1.22219 0.94098 1.37836 1.05882 0.93222 1.25665 1.02136 0.94729 0.95460 1.70007 1.36390 1.38464 1.10052 0.85632 0.81058 0.77752 0.77911 1.19504 1.20684 1.20623 1.60718 1.54804 1.06675 1.07908 1.22354 0.99188 0.89984 0.97098 1.21692 0.85544 0.89361 0.96665 0.89551 1.86570 1.20366 1.81263 1.47968 1.23219 1.00252 0.93660 0.86789 1.87983 1.89399 1.20051 1.33424 1.22290 0.95242 0.80579 0.99620 1.22720 0.98436 0.97316 1.03121 1.22657 0.92019 0.92831 0.93796 1.87913 1.18686 1.73030 1.52584 1.22718 0.85169 0.90840 1.02563 1.22282 0.99394 0.97257 0.99878 0.92434 0.94849 0.93968 0.92081 0.95658 0.92852 0.85660 0.95604 0.91547 0.77183 0.91926 0.91439 0.90905 0.91646 0.90240 0.91617 0.87482 0.91510 0.86858 0.89437 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.72 71.98 0.70 -4.25 16 2 C -0.10 -5.00 5.44 30.59 0.17 -4.83 16 3 C 0.22 10.95 1.99 44.17 0.09 11.04 16 4 H 0.00 0.14 7.70 -2.39 -0.02 0.12 16 5 C -0.56 -29.99 8.47 25.60 0.22 -29.78 16 6 H 0.05 2.63 7.73 -2.91 -0.02 2.61 16 7 C 0.02 1.10 5.29 84.66 0.45 1.54 16 8 N -0.91 -51.39 11.29 21.45 0.24 -51.15 16 9 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 13 N -0.67 -27.61 5.62 -495.45 -2.78 -30.39 16 14 C 0.04 1.53 5.17 86.30 0.45 1.97 16 15 C 0.13 3.71 3.50 30.59 0.11 3.82 16 16 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 17 O -0.56 -16.98 13.17 -144.32 -1.90 -18.88 16 18 C 0.04 0.90 5.39 71.98 0.39 1.29 16 19 O -0.39 -9.82 9.96 -144.32 -1.44 -11.26 16 20 C 0.08 1.53 2.70 30.71 0.08 1.62 16 21 C -0.18 -3.17 5.76 30.68 0.18 -3.00 16 22 C 0.06 0.94 6.84 72.01 0.49 1.43 16 23 O -0.40 -7.34 10.77 -148.98 -1.60 -8.94 16 24 C 0.06 0.87 6.84 72.01 0.49 1.37 16 25 C -0.15 -2.55 5.79 30.68 0.18 -2.37 16 26 H 0.06 2.23 7.90 -2.39 -0.02 2.21 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 3.31 5.95 -2.38 -0.01 3.29 16 30 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.26 14.07 8.31 -92.72 -0.77 13.30 16 32 H 0.33 13.67 8.46 -89.70 -0.76 12.91 16 33 H 0.03 0.95 8.11 -2.38 -0.02 0.93 16 34 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 35 H 0.38 9.14 9.05 -74.06 -0.67 8.47 16 36 H 0.06 1.39 7.99 -2.39 -0.02 1.37 16 37 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 38 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.34 7.99 -2.39 -0.02 1.32 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -62.76 367.12 -1.95 -64.71 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.48 Total: 31.22 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 3.98 Total: -20.16 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.54 Total: -81.55 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -4.94 Total: -39.08 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.76 -1.95 -64.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571175219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.053 kcal (2) G-P(sol) polarization free energy of solvation -62.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds