Wall clock time and date at job start Tue Mar 31 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46614 * 2 1 4 4 H 1.09007 * 109.46797 * 177.95549 * 3 2 1 5 5 C 1.50702 * 109.47310 * 57.95701 * 3 2 1 6 6 H 1.07995 * 120.00182 * 239.99734 * 5 3 2 7 7 C 1.37878 * 119.99617 * 59.99910 * 5 3 2 8 8 N 1.31510 * 120.00692 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47058 * 59.99878 * 9 7 5 11 11 H 1.48492 * 109.47387 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47096 * 300.00201 * 9 7 5 13 13 N 1.46897 * 109.47229 * 297.95392 * 3 2 1 14 14 C 1.46895 * 111.00073 * 273.78463 * 13 3 2 15 15 C 1.53005 * 109.46872 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.47044 * 304.99154 * 15 14 13 17 17 O 1.42894 * 109.47509 * 64.99535 * 15 14 13 18 18 C 1.53007 * 109.46795 * 184.99929 * 15 14 13 19 19 O 1.42901 * 109.46934 * 175.00065 * 18 15 14 20 20 C 1.42901 * 114.00011 * 179.97438 * 19 18 15 21 21 C 1.53173 * 109.54091 * 269.55342 * 20 19 18 22 22 C 1.53099 * 109.16059 * 183.15184 * 21 20 19 23 23 O 1.42899 * 109.41535 * 57.60804 * 22 21 20 24 24 C 1.42903 * 114.10015 * 298.84560 * 23 22 21 25 25 C 1.53087 * 109.41736 * 61.15192 * 24 23 22 26 26 H 1.09000 * 109.47363 * 294.45486 * 1 2 3 27 27 H 1.09000 * 109.46794 * 174.45726 * 1 2 3 28 28 H 1.08999 * 109.47583 * 54.45749 * 1 2 3 29 29 H 1.08998 * 109.46844 * 119.99595 * 2 1 3 30 30 H 1.08992 * 109.47214 * 240.00148 * 2 1 3 31 31 H 0.96993 * 120.00400 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99821 * 149.82231 * 13 3 2 33 33 H 1.09005 * 109.47061 * 294.60637 * 14 13 3 34 34 H 1.08997 * 109.47274 * 54.61152 * 14 13 3 35 35 H 0.96705 * 113.99856 * 59.99774 * 17 15 14 36 36 H 1.09000 * 109.46787 * 294.99754 * 18 15 14 37 37 H 1.08995 * 109.47282 * 54.99865 * 18 15 14 38 38 H 1.09001 * 109.54088 * 29.82210 * 20 19 18 39 39 H 1.08995 * 109.52515 * 303.05702 * 21 20 19 40 40 H 1.09001 * 109.52431 * 63.25052 * 21 20 19 41 41 H 1.09006 * 109.48131 * 297.62727 * 22 21 20 42 42 H 1.08991 * 109.48118 * 177.59317 * 22 21 20 43 43 H 1.09013 * 109.47633 * 301.17505 * 24 23 22 44 44 H 1.09001 * 109.49468 * 181.15012 * 24 23 22 45 45 H 1.09002 * 109.52320 * 182.49103 * 25 24 23 46 46 H 1.08997 * 109.52005 * 62.30346 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0367 5 6 1.4966 2.1675 1.2044 6 1 0.8795 3.0441 1.0740 7 6 1.7874 1.7114 2.4726 8 7 2.5384 0.6435 2.6314 9 14 1.1145 2.6103 3.9655 10 1 -0.3696 2.6105 3.9158 11 1 1.5677 1.9245 5.2022 12 1 1.6100 4.0102 3.9653 13 7 1.5910 2.1206 -1.2234 14 6 2.5280 1.8851 -2.3299 15 6 1.9616 2.4913 -3.6155 16 1 0.9645 2.0905 -3.7976 17 8 1.8866 3.9118 -3.4795 18 6 2.8754 2.1390 -4.7911 19 8 2.2876 2.6048 -6.0075 20 6 3.0656 2.3255 -7.1731 21 6 4.0197 3.4927 -7.4441 22 6 4.7922 3.2204 -8.7376 23 8 3.8689 3.0352 -9.8123 24 6 2.9823 1.9284 -9.6359 25 6 2.1371 2.1488 -8.3786 26 1 -0.3634 0.4254 0.9355 27 1 -0.3633 -1.0229 -0.0993 28 1 -0.3634 0.5974 -0.8362 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 2.7426 0.3225 3.5236 32 1 1.4619 3.1084 -1.0627 33 1 3.4862 2.3510 -2.1000 34 1 2.6684 0.8127 -2.4650 35 1 2.7395 4.3368 -3.3152 36 1 3.8464 2.6142 -4.6515 37 1 3.0037 1.0578 -4.8402 38 1 3.6396 1.4120 -7.0181 39 1 3.4472 4.4143 -7.5490 40 1 4.7205 3.5904 -6.6150 41 1 5.3958 2.3207 -8.6179 42 1 5.4417 4.0674 -8.9582 43 1 3.5623 1.0118 -9.5278 44 1 2.3281 1.8444 -10.5036 45 1 1.4916 1.2854 -8.2177 46 1 1.5266 3.0432 -8.5023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571175224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:38 Heat of formation + Delta-G solvation = -158.750584 kcal Electronic energy + Delta-G solvation = -23426.404662 eV Core-core repulsion = 19929.511891 eV Total energy + Delta-G solvation = -3496.892771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91508 -38.33919 -36.92969 -35.60902 -32.79245 -32.52111 -31.48621 -30.85832 -29.30837 -26.48391 -24.82212 -24.04636 -23.65544 -22.98024 -21.41269 -20.58485 -19.04469 -17.29804 -16.79570 -16.49729 -16.33420 -16.18322 -15.56910 -15.18414 -14.95796 -14.79478 -14.35943 -13.89786 -13.61126 -13.32306 -13.24946 -12.99933 -12.82776 -12.60451 -12.03722 -11.81275 -11.69939 -11.60050 -11.39509 -11.21470 -10.93000 -10.82226 -10.74075 -10.62017 -10.37118 -10.17700 -10.06589 -9.91275 -9.65700 -9.53347 -9.34805 -8.80008 -8.47920 -7.26505 -6.03194 -4.08438 3.30597 3.31284 3.35184 3.38685 3.54057 4.38718 4.40136 4.44660 4.59733 4.61560 4.72687 4.84051 4.89092 5.02506 5.08831 5.19826 5.27341 5.28579 5.30725 5.37148 5.48213 5.49426 5.58083 5.66758 5.80118 5.83222 5.90449 6.11404 6.37834 6.51692 6.70063 6.80513 6.84581 7.07769 7.21893 7.28364 7.48783 7.73072 7.78870 7.81525 7.88094 8.25042 8.37359 8.66142 9.00982 9.56445 11.02905 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.002647 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.250234 B =10574.616513 C =10805.339698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.035 3.965 15 C 0.114 3.886 16 H 0.111 0.889 17 O -0.550 6.550 18 C 0.031 3.969 19 O -0.367 6.367 20 C 0.087 3.913 21 C -0.178 4.178 22 C 0.064 3.936 23 O -0.383 6.383 24 C 0.064 3.936 25 C -0.154 4.154 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.338 0.662 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.366 0.634 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 1.587 -20.864 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.096 4.096 15 C 0.054 3.946 16 H 0.129 0.871 17 O -0.354 6.354 18 C -0.046 4.046 19 O -0.286 6.286 20 C 0.029 3.971 21 C -0.216 4.216 22 C -0.013 4.013 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.192 4.192 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.212 0.788 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.411 1.048 -21.151 21.450 hybrid contribution 1.385 0.620 1.594 2.201 sum 4.796 1.668 -19.557 20.206 Atomic orbital electron populations 1.21442 0.97423 0.97136 1.01692 1.21430 0.95197 0.98211 0.99192 1.19127 0.93146 0.91655 0.85209 0.98395 1.21158 1.31678 1.12005 0.90326 0.92271 1.24882 0.95063 0.95018 0.98868 1.69871 1.37437 1.23111 1.22496 0.86623 0.79510 0.79722 0.81946 1.20154 1.21371 1.20366 1.60560 1.46594 1.16979 1.07037 1.22447 0.94153 1.00610 0.92389 1.22042 1.00439 0.81371 0.90706 0.87097 1.86645 1.35024 1.19175 1.94531 1.23373 0.96906 0.98633 0.85725 1.88025 1.46423 1.80552 1.13574 1.22076 0.92284 0.96397 0.86377 1.22729 0.99673 1.00747 0.98484 1.22564 0.91113 1.01446 0.86206 1.87939 1.48676 1.50381 1.43187 1.22589 0.91970 0.88968 0.97759 1.22294 0.99015 1.04194 0.93659 0.92904 0.96859 0.93385 0.89665 0.97317 0.92912 0.84394 0.96147 0.90991 0.78782 0.93350 0.92464 0.92298 0.89927 0.90724 0.93145 0.88524 0.93059 0.88262 0.90073 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.46 37.16 0.35 -2.36 16 2 C -0.10 -2.45 5.58 -26.73 -0.15 -2.60 16 3 C 0.22 5.31 2.30 -68.86 -0.16 5.15 16 4 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 5 C -0.51 -13.73 7.33 -34.44 -0.25 -13.98 16 6 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.01 11.34 55.43 0.63 -24.39 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -14.13 5.51 -107.95 -0.59 -14.73 16 14 C 0.03 0.59 5.12 -3.82 -0.02 0.57 16 15 C 0.11 1.67 3.49 -26.72 -0.09 1.58 16 16 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 17 O -0.55 -8.38 12.92 -40.08 -0.52 -8.90 16 18 C 0.03 0.38 5.39 37.16 0.20 0.58 16 19 O -0.37 -4.73 9.96 -40.08 -0.40 -5.13 16 20 C 0.09 0.87 2.70 -26.55 -0.07 0.80 16 21 C -0.18 -1.60 5.76 -26.59 -0.15 -1.75 16 22 C 0.06 0.50 6.84 37.21 0.25 0.75 16 23 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16 24 C 0.06 0.49 6.84 37.20 0.25 0.74 16 25 C -0.15 -1.37 5.79 -26.60 -0.15 -1.53 16 26 H 0.05 1.29 7.37 -51.93 -0.38 0.90 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 29 H 0.09 2.28 6.13 -51.93 -0.32 1.96 16 30 H 0.01 0.18 7.43 -51.93 -0.39 -0.20 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.34 7.14 7.89 -39.29 -0.31 6.83 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.22 7.39 -51.93 -0.38 0.84 16 35 H 0.37 4.33 9.05 45.56 0.41 4.74 16 36 H 0.05 0.52 7.99 -51.93 -0.42 0.10 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.62 7.99 -51.93 -0.42 0.21 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -29.89 363.04 -8.48 -38.37 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.58 Total: 7.67 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.09 Total: -10.42 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.03 Total: -39.11 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.30 Total: -18.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.89 -8.48 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571175224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.377 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds