Wall clock time and date at job start Tue Mar 31 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46614 * 2 1 4 4 H 1.09007 * 109.46797 * 177.95549 * 3 2 1 5 5 C 1.50702 * 109.47310 * 57.95701 * 3 2 1 6 6 H 1.07995 * 120.00182 * 239.99734 * 5 3 2 7 7 C 1.37878 * 119.99617 * 59.99910 * 5 3 2 8 8 N 1.31510 * 120.00692 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47058 * 59.99878 * 9 7 5 11 11 H 1.48492 * 109.47387 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47096 * 300.00201 * 9 7 5 13 13 N 1.46897 * 109.47229 * 297.95392 * 3 2 1 14 14 C 1.46895 * 111.00073 * 273.78463 * 13 3 2 15 15 C 1.53005 * 109.46872 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.47044 * 304.99154 * 15 14 13 17 17 O 1.42894 * 109.47509 * 64.99535 * 15 14 13 18 18 C 1.53007 * 109.46795 * 184.99929 * 15 14 13 19 19 O 1.42901 * 109.46934 * 175.00065 * 18 15 14 20 20 C 1.42901 * 114.00011 * 179.97438 * 19 18 15 21 21 C 1.53173 * 109.54091 * 269.55342 * 20 19 18 22 22 C 1.53099 * 109.16059 * 183.15184 * 21 20 19 23 23 O 1.42899 * 109.41535 * 57.60804 * 22 21 20 24 24 C 1.42903 * 114.10015 * 298.84560 * 23 22 21 25 25 C 1.53087 * 109.41736 * 61.15192 * 24 23 22 26 26 H 1.09000 * 109.47363 * 294.45486 * 1 2 3 27 27 H 1.09000 * 109.46794 * 174.45726 * 1 2 3 28 28 H 1.08999 * 109.47583 * 54.45749 * 1 2 3 29 29 H 1.08998 * 109.46844 * 119.99595 * 2 1 3 30 30 H 1.08992 * 109.47214 * 240.00148 * 2 1 3 31 31 H 0.96993 * 120.00400 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99821 * 149.82231 * 13 3 2 33 33 H 1.09005 * 109.47061 * 294.60637 * 14 13 3 34 34 H 1.08997 * 109.47274 * 54.61152 * 14 13 3 35 35 H 0.96705 * 113.99856 * 59.99774 * 17 15 14 36 36 H 1.09000 * 109.46787 * 294.99754 * 18 15 14 37 37 H 1.08995 * 109.47282 * 54.99865 * 18 15 14 38 38 H 1.09001 * 109.54088 * 29.82210 * 20 19 18 39 39 H 1.08995 * 109.52515 * 303.05702 * 21 20 19 40 40 H 1.09001 * 109.52431 * 63.25052 * 21 20 19 41 41 H 1.09006 * 109.48131 * 297.62727 * 22 21 20 42 42 H 1.08991 * 109.48118 * 177.59317 * 22 21 20 43 43 H 1.09013 * 109.47633 * 301.17505 * 24 23 22 44 44 H 1.09001 * 109.49468 * 181.15012 * 24 23 22 45 45 H 1.09002 * 109.52320 * 182.49103 * 25 24 23 46 46 H 1.08997 * 109.52005 * 62.30346 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0367 5 6 1.4966 2.1675 1.2044 6 1 0.8795 3.0441 1.0740 7 6 1.7874 1.7114 2.4726 8 7 2.5384 0.6435 2.6314 9 14 1.1145 2.6103 3.9655 10 1 -0.3696 2.6105 3.9158 11 1 1.5677 1.9245 5.2022 12 1 1.6100 4.0102 3.9653 13 7 1.5910 2.1206 -1.2234 14 6 2.5280 1.8851 -2.3299 15 6 1.9616 2.4913 -3.6155 16 1 0.9645 2.0905 -3.7976 17 8 1.8866 3.9118 -3.4795 18 6 2.8754 2.1390 -4.7911 19 8 2.2876 2.6048 -6.0075 20 6 3.0656 2.3255 -7.1731 21 6 4.0197 3.4927 -7.4441 22 6 4.7922 3.2204 -8.7376 23 8 3.8689 3.0352 -9.8123 24 6 2.9823 1.9284 -9.6359 25 6 2.1371 2.1488 -8.3786 26 1 -0.3634 0.4254 0.9355 27 1 -0.3633 -1.0229 -0.0993 28 1 -0.3634 0.5974 -0.8362 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 2.7426 0.3225 3.5236 32 1 1.4619 3.1084 -1.0627 33 1 3.4862 2.3510 -2.1000 34 1 2.6684 0.8127 -2.4650 35 1 2.7395 4.3368 -3.3152 36 1 3.8464 2.6142 -4.6515 37 1 3.0037 1.0578 -4.8402 38 1 3.6396 1.4120 -7.0181 39 1 3.4472 4.4143 -7.5490 40 1 4.7205 3.5904 -6.6150 41 1 5.3958 2.3207 -8.6179 42 1 5.4417 4.0674 -8.9582 43 1 3.5623 1.0118 -9.5278 44 1 2.3281 1.8444 -10.5036 45 1 1.4916 1.2854 -8.2177 46 1 1.5266 3.0432 -8.5023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571175224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:37 Heat of formation + Delta-G solvation = -180.911335 kcal Electronic energy + Delta-G solvation = -23427.365624 eV Core-core repulsion = 19929.511891 eV Total energy + Delta-G solvation = -3497.853733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65326 -39.42461 -38.13921 -37.15511 -34.38573 -33.53910 -32.63001 -32.11309 -30.67199 -28.24304 -25.97206 -25.14492 -24.72036 -24.39293 -22.61155 -21.32072 -20.94009 -18.58510 -17.96857 -17.64630 -17.41685 -16.98454 -16.90680 -16.46831 -16.04873 -15.74401 -15.62888 -15.28291 -15.00682 -14.85836 -14.32472 -14.16415 -13.97441 -13.80817 -13.49927 -13.26851 -12.99662 -12.80845 -12.67704 -12.44657 -12.39482 -12.27393 -12.02076 -11.96037 -11.81648 -11.59036 -11.39883 -11.33681 -10.93313 -10.78582 -10.62209 -10.52759 -10.48946 -8.99327 -8.10179 -6.21865 1.42327 1.43829 1.50854 2.39062 2.46832 2.94022 3.18673 3.49039 3.59544 3.75022 3.81348 3.97005 4.04670 4.09778 4.14529 4.19765 4.25481 4.40001 4.43781 4.51674 4.56163 4.61873 4.67955 4.74928 4.76905 4.80423 4.82567 4.94399 5.03380 5.09526 5.15489 5.19664 5.29976 5.39841 5.56446 5.71358 5.81746 5.89810 6.20897 6.23350 6.28065 6.49563 6.79275 6.85491 7.03406 7.46890 8.94714 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.002647 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.250234 B =10574.616513 C =10805.339698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.033 1.033 5 C -0.526 4.526 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.680 5.680 14 C 0.038 3.962 15 C 0.126 3.874 16 H 0.094 0.906 17 O -0.566 6.566 18 C 0.039 3.961 19 O -0.390 6.390 20 C 0.080 3.920 21 C -0.175 4.175 22 C 0.063 3.937 23 O -0.403 6.403 24 C 0.064 3.936 25 C -0.152 4.152 26 H 0.029 0.971 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.381 0.619 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 1.514 -21.907 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.015 1.015 5 C -0.565 4.565 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.092 4.092 15 C 0.066 3.934 16 H 0.111 0.889 17 O -0.372 6.372 18 C -0.039 4.039 19 O -0.309 6.309 20 C 0.022 3.978 21 C -0.213 4.213 22 C -0.014 4.014 23 O -0.323 6.323 24 C -0.012 4.012 25 C -0.190 4.190 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.727 0.985 -22.215 22.547 hybrid contribution 1.307 0.657 1.861 2.367 sum 5.034 1.641 -20.354 21.032 Atomic orbital electron populations 1.21308 0.96212 0.98465 1.00558 1.21317 0.96169 0.97682 0.98528 1.18915 0.91081 0.92263 0.86323 1.01548 1.21428 1.31521 1.12021 0.91481 0.92759 1.25588 0.95336 0.95701 1.01421 1.69995 1.38367 1.24213 1.22938 0.85699 0.78859 0.78775 0.78835 1.19879 1.21068 1.19775 1.60474 1.47705 1.16472 1.06448 1.22478 0.93739 1.00960 0.92040 1.21787 0.99992 0.80972 0.90655 0.88852 1.86605 1.36563 1.19465 1.94615 1.23218 0.96541 0.99464 0.84653 1.87988 1.47591 1.80945 1.14407 1.22296 0.92581 0.97332 0.85576 1.22688 0.99519 0.99538 0.99514 1.22676 0.90888 1.02690 0.85140 1.87915 1.49211 1.51226 1.43908 1.22708 0.91980 0.89033 0.97527 1.22298 0.99049 1.03620 0.94055 0.95192 0.94585 0.92904 0.92454 0.95760 0.92981 0.84729 0.95512 0.90917 0.77085 0.91709 0.91270 0.90892 0.91713 0.89979 0.91630 0.87425 0.91510 0.86944 0.89542 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.46 71.98 0.68 -4.13 16 2 C -0.10 -4.72 5.58 30.60 0.17 -4.55 16 3 C 0.22 11.01 2.30 44.17 0.10 11.11 16 4 H -0.03 -1.81 7.84 -2.38 -0.02 -1.83 16 5 C -0.53 -28.33 7.33 25.60 0.19 -28.15 16 6 H 0.05 2.92 7.60 -2.91 -0.02 2.89 16 7 C 0.02 1.03 5.30 84.66 0.45 1.48 16 8 N -0.92 -51.99 11.34 21.45 0.24 -51.75 16 9 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.68 -28.06 5.51 -495.44 -2.73 -30.79 16 14 C 0.04 1.25 5.12 86.31 0.44 1.69 16 15 C 0.13 3.55 3.49 30.60 0.11 3.65 16 16 H 0.09 2.98 8.14 -2.39 -0.02 2.97 16 17 O -0.57 -16.70 12.92 -144.34 -1.86 -18.56 16 18 C 0.04 0.86 5.39 71.98 0.39 1.25 16 19 O -0.39 -9.53 9.96 -144.34 -1.44 -10.96 16 20 C 0.08 1.46 2.70 30.71 0.08 1.54 16 21 C -0.17 -2.88 5.76 30.69 0.18 -2.70 16 22 C 0.06 0.86 6.84 72.02 0.49 1.35 16 23 O -0.40 -7.11 10.77 -148.98 -1.60 -8.71 16 24 C 0.06 0.86 6.84 72.01 0.49 1.35 16 25 C -0.15 -2.54 5.79 30.68 0.18 -2.36 16 26 H 0.03 1.43 7.37 -2.39 -0.02 1.42 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 2.27 7.50 -2.39 -0.02 2.25 16 29 H 0.06 3.09 6.13 -2.39 -0.01 3.08 16 30 H 0.02 1.05 7.43 -2.39 -0.02 1.04 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.34 14.11 7.89 -89.69 -0.71 13.41 16 33 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 2.38 7.39 -2.39 -0.02 2.36 16 35 H 0.38 8.51 9.05 -74.05 -0.67 7.84 16 36 H 0.06 1.23 7.99 -2.39 -0.02 1.21 16 37 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 38 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.20 7.99 -2.39 -0.02 1.18 16 41 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.55 363.04 -1.84 -65.39 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.42 Total: 28.47 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 3.95 Total: -18.46 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -2.49 Total: -82.54 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -4.91 Total: -38.24 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -63.55 -1.84 -65.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571175224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.522 kcal (2) G-P(sol) polarization free energy of solvation -63.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds