Wall clock time and date at job start Tue Mar 31 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00031 * 2 1 4 4 O 1.21686 * 119.99716 * 179.97438 * 3 2 1 5 5 C 1.46381 * 120.00078 * 0.02562 * 3 2 1 6 6 H 1.08001 * 119.99623 * 355.24207 * 5 3 2 7 7 C 1.40047 * 119.99750 * 175.24423 * 5 3 2 8 8 N 1.30668 * 120.00149 * 6.28167 * 7 5 3 9 9 Si 1.86801 * 119.99716 * 186.27931 * 7 5 3 10 10 H 1.48502 * 109.47093 * 94.98139 * 9 7 5 11 11 H 1.48497 * 109.47059 * 214.98461 * 9 7 5 12 12 H 1.48501 * 109.47270 * 334.98239 * 9 7 5 13 13 C 1.46496 * 119.99853 * 179.97438 * 2 1 3 14 14 H 1.09001 * 109.47153 * 179.97438 * 13 2 1 15 15 C 1.53006 * 109.47053 * 60.00022 * 13 2 1 16 16 C 1.52998 * 109.47015 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47207 * 59.99955 * 16 15 13 18 18 C 1.52996 * 109.47171 * 299.99963 * 17 16 15 19 19 C 1.52998 * 109.47025 * 59.99926 * 18 17 16 20 20 H 1.09001 * 109.47330 * 60.00261 * 19 18 17 21 21 C 1.50705 * 109.47092 * 180.02562 * 19 18 17 22 22 C 1.38241 * 119.99687 * 240.00093 * 21 19 18 23 23 C 1.38238 * 119.99704 * 179.97438 * 22 21 19 24 24 C 1.38240 * 119.99699 * 0.02562 * 23 22 21 25 25 C 1.38231 * 120.00202 * 0.25357 * 24 23 22 26 26 C 1.38232 * 119.99883 * 59.97434 * 21 19 18 27 27 H 1.09008 * 109.46985 * 270.00254 * 1 2 3 28 28 H 1.08999 * 109.47036 * 30.00018 * 1 2 3 29 29 H 1.08992 * 109.47161 * 150.00238 * 1 2 3 30 30 H 0.97003 * 119.99596 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46865 * 299.99839 * 15 13 2 32 32 H 1.08999 * 109.46909 * 59.99924 * 15 13 2 33 33 H 1.09002 * 109.47345 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.47091 * 300.00201 * 16 15 13 35 35 H 1.09005 * 109.46895 * 60.00125 * 17 16 15 36 36 H 1.08994 * 109.47249 * 179.97438 * 17 16 15 37 37 H 1.08995 * 109.47534 * 299.99873 * 18 17 16 38 38 H 1.08999 * 109.46910 * 179.97438 * 18 17 16 39 39 H 1.07989 * 120.00361 * 359.97438 * 22 21 19 40 40 H 1.07994 * 120.00026 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.99496 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99981 * 179.72622 * 25 24 23 43 43 H 1.07994 * 120.00107 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1671 0.0005 5 6 1.4070 2.4349 0.0006 6 1 0.3298 2.4365 -0.0766 7 6 2.1038 3.6456 0.1011 8 7 3.4101 3.6521 0.0708 9 14 1.1655 5.2511 0.2786 10 1 1.0549 5.6034 1.7170 11 1 1.8895 6.3296 -0.4410 12 1 -0.1937 5.0966 -0.2992 13 6 2.1975 -1.2687 0.0006 14 1 3.2691 -1.0696 0.0000 15 6 1.8278 -2.0716 -1.2484 16 6 2.5933 -3.3963 -1.2481 17 6 2.2242 -4.1983 0.0015 18 6 2.5938 -3.3955 1.2504 19 6 1.8284 -2.0708 1.2501 20 1 0.7568 -2.2703 1.2505 21 6 2.1930 -1.2797 2.4799 22 6 1.2142 -0.9272 3.3903 23 6 1.5486 -0.2020 4.5186 24 6 2.8618 0.1710 4.7363 25 6 3.8396 -0.1765 3.8231 26 6 3.5062 -0.9071 2.6979 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 3.8926 4.4908 0.1401 31 1 0.7561 -2.2707 -1.2482 32 1 2.0912 -1.5004 -2.1386 33 1 2.3303 -3.9681 -2.1381 34 1 3.6649 -3.1968 -1.2484 35 1 1.1526 -4.3979 0.0018 36 1 2.7692 -5.1423 0.0015 37 1 3.6654 -3.1960 1.2501 38 1 2.3305 -3.9667 2.1406 39 1 0.1883 -1.2183 3.2200 40 1 0.7840 0.0737 5.2296 41 1 3.1231 0.7380 5.6177 42 1 4.8648 0.1188 3.9910 43 1 4.2708 -1.1825 1.9867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585088176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:57 Heat of formation + Delta-G solvation = -27.494418 kcal Electronic energy + Delta-G solvation = -24036.018976 eV Core-core repulsion = 20852.126819 eV Total energy + Delta-G solvation = -3183.892156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75983 -37.82603 -36.53912 -33.53631 -32.36824 -32.21157 -30.35169 -29.65983 -28.19907 -25.98620 -25.46904 -23.02478 -22.14262 -22.00335 -20.50347 -19.49312 -18.58384 -16.54038 -16.27172 -15.58385 -15.21869 -14.76226 -14.46883 -14.21028 -13.90589 -13.80672 -13.53141 -13.32350 -12.80827 -12.64715 -12.32233 -12.15888 -12.03187 -11.65103 -11.50526 -11.34787 -11.18111 -10.99627 -10.94850 -10.85543 -10.73115 -10.47693 -10.31076 -10.15856 -10.05481 -9.83029 -9.74603 -8.78431 -8.31531 -8.10116 -7.46650 -7.06748 -6.13375 -4.55817 1.95125 1.99903 3.16018 3.23345 3.25976 4.12922 4.34321 4.59262 4.63718 4.89769 5.03688 5.22340 5.32794 5.45334 5.52432 5.56745 5.57419 5.65676 5.75511 5.80832 5.83767 5.90959 5.97492 6.05741 6.08188 6.12341 6.20168 6.29477 6.33798 6.40285 6.44039 6.48320 6.54707 6.60470 6.62524 6.79432 6.83195 7.00581 7.08080 7.23718 7.51051 7.58473 7.74958 8.23666 8.46121 9.09821 9.53555 10.65530 10.85828 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.007042 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.702164 B = 3974.941205 C = 5019.212285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.637 5.637 3 C 0.564 3.436 4 O -0.576 6.576 5 C -0.543 4.543 6 H 0.069 0.931 7 C 0.090 3.910 8 N -0.767 5.767 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.158 3.842 14 H 0.093 0.907 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.056 4.056 20 H 0.071 0.929 21 C -0.054 4.054 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.114 4.114 26 C -0.092 4.092 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 -12.042 3.910 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.374 5.374 3 C 0.369 3.631 4 O -0.458 6.458 5 C -0.580 4.580 6 H 0.087 0.913 7 C -0.129 4.129 8 N -0.395 5.395 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.053 3.947 14 H 0.111 0.889 15 C -0.167 4.167 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.076 4.076 20 H 0.089 0.911 21 C -0.054 4.054 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.132 4.132 26 C -0.110 4.110 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.264 -11.901 3.904 12.943 hybrid contribution -0.692 1.046 0.118 1.260 sum -3.956 -10.854 4.022 12.233 Atomic orbital electron populations 1.21341 0.82862 1.00722 0.99353 1.47866 1.04711 1.04943 1.79857 1.18127 0.86909 0.82142 0.75902 1.90569 1.13993 1.86153 1.55088 1.20993 0.93859 0.89503 1.53653 0.91262 1.25676 0.94533 0.99989 0.92735 1.70026 1.07103 1.26889 1.35522 0.86477 0.80389 0.81837 0.78776 1.19887 1.20534 1.18935 1.20620 0.98990 0.84225 0.90864 0.88869 1.21924 0.99812 0.95608 0.99311 1.21512 1.00614 0.96082 0.97252 1.21529 1.01018 0.97954 0.94892 1.21570 1.00478 0.95131 0.97440 1.20586 0.99871 0.93762 0.93377 0.91106 1.19622 0.93258 0.97704 0.94773 1.20871 0.98337 0.99543 0.94604 1.20950 0.96088 0.99277 0.97868 1.20972 0.93455 1.00809 0.99582 1.21016 0.99134 0.98201 0.94809 1.20863 0.96062 0.97629 0.96426 0.95346 0.91326 0.94170 0.92352 0.92343 0.91778 0.92409 0.91944 0.92235 0.92327 0.91724 0.92185 0.87059 0.86959 0.87008 0.86811 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 9.24 59.85 0.55 2.47 16 2 N -0.64 -14.20 2.34 -175.59 -0.41 -14.61 16 3 C 0.56 15.82 7.61 -12.99 -0.10 15.72 16 4 O -0.58 -18.16 14.37 5.20 0.07 -18.09 16 5 C -0.54 -15.39 8.76 -35.63 -0.31 -15.71 16 6 H 0.07 1.82 5.96 -52.49 -0.31 1.51 16 7 C 0.09 2.54 5.49 -17.37 -0.10 2.44 16 8 N -0.77 -23.08 11.85 55.55 0.66 -22.43 16 9 Si 0.90 20.52 29.56 -169.99 -5.03 15.50 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.16 3.01 1.79 -67.93 -0.12 2.89 16 14 H 0.09 2.09 6.14 -51.93 -0.32 1.77 16 15 C -0.13 -2.03 5.18 -26.73 -0.14 -2.17 16 16 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 17 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 18 C -0.11 -1.44 5.02 -26.73 -0.13 -1.58 16 19 C -0.06 -0.91 1.76 -91.77 -0.16 -1.07 16 20 H 0.07 1.09 7.41 -51.93 -0.38 0.70 16 21 C -0.05 -0.97 4.38 -104.62 -0.46 -1.42 16 22 C -0.12 -1.98 9.67 -39.58 -0.38 -2.37 16 23 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 24 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 25 C -0.11 -2.09 10.05 -39.58 -0.40 -2.48 16 26 C -0.09 -1.76 8.71 -39.58 -0.34 -2.10 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.07 1.35 6.04 -51.93 -0.31 1.04 16 29 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 30 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 31 H 0.06 0.86 6.66 -51.93 -0.35 0.52 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.90 7.39 -51.93 -0.38 0.51 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.69 7.95 -52.49 -0.42 1.27 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.12 2.22 7.10 -52.49 -0.37 1.84 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -33.41 339.56 -9.33 -42.74 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.54 Total: 5.40 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.20 Total: -13.62 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.25 Total: -37.04 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.07 Total: -18.09 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.41 -9.33 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585088176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.247 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds