Wall clock time and date at job start Tue Mar 31 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00031 * 2 1 4 4 O 1.21686 * 119.99716 * 179.97438 * 3 2 1 5 5 C 1.46381 * 120.00078 * 0.02562 * 3 2 1 6 6 H 1.08001 * 119.99623 * 355.24207 * 5 3 2 7 7 C 1.40047 * 119.99750 * 175.24423 * 5 3 2 8 8 N 1.30668 * 120.00149 * 6.28167 * 7 5 3 9 9 Si 1.86801 * 119.99716 * 186.27931 * 7 5 3 10 10 H 1.48502 * 109.47093 * 94.98139 * 9 7 5 11 11 H 1.48497 * 109.47059 * 214.98461 * 9 7 5 12 12 H 1.48501 * 109.47270 * 334.98239 * 9 7 5 13 13 C 1.46496 * 119.99853 * 179.97438 * 2 1 3 14 14 H 1.09001 * 109.47153 * 179.97438 * 13 2 1 15 15 C 1.53006 * 109.47053 * 60.00022 * 13 2 1 16 16 C 1.52998 * 109.47015 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.47207 * 59.99955 * 16 15 13 18 18 C 1.52996 * 109.47171 * 299.99963 * 17 16 15 19 19 C 1.52998 * 109.47025 * 59.99926 * 18 17 16 20 20 H 1.09001 * 109.47330 * 60.00261 * 19 18 17 21 21 C 1.50705 * 109.47092 * 180.02562 * 19 18 17 22 22 C 1.38241 * 119.99687 * 240.00093 * 21 19 18 23 23 C 1.38238 * 119.99704 * 179.97438 * 22 21 19 24 24 C 1.38240 * 119.99699 * 0.02562 * 23 22 21 25 25 C 1.38231 * 120.00202 * 0.25357 * 24 23 22 26 26 C 1.38232 * 119.99883 * 59.97434 * 21 19 18 27 27 H 1.09008 * 109.46985 * 270.00254 * 1 2 3 28 28 H 1.08999 * 109.47036 * 30.00018 * 1 2 3 29 29 H 1.08992 * 109.47161 * 150.00238 * 1 2 3 30 30 H 0.97003 * 119.99596 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46865 * 299.99839 * 15 13 2 32 32 H 1.08999 * 109.46909 * 59.99924 * 15 13 2 33 33 H 1.09002 * 109.47345 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.47091 * 300.00201 * 16 15 13 35 35 H 1.09005 * 109.46895 * 60.00125 * 17 16 15 36 36 H 1.08994 * 109.47249 * 179.97438 * 17 16 15 37 37 H 1.08995 * 109.47534 * 299.99873 * 18 17 16 38 38 H 1.08999 * 109.46910 * 179.97438 * 18 17 16 39 39 H 1.07989 * 120.00361 * 359.97438 * 22 21 19 40 40 H 1.07994 * 120.00026 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.99496 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99981 * 179.72622 * 25 24 23 43 43 H 1.07994 * 120.00107 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1671 0.0005 5 6 1.4070 2.4349 0.0006 6 1 0.3298 2.4365 -0.0766 7 6 2.1038 3.6456 0.1011 8 7 3.4101 3.6521 0.0708 9 14 1.1655 5.2511 0.2786 10 1 1.0549 5.6034 1.7170 11 1 1.8895 6.3296 -0.4410 12 1 -0.1937 5.0966 -0.2992 13 6 2.1975 -1.2687 0.0006 14 1 3.2691 -1.0696 0.0000 15 6 1.8278 -2.0716 -1.2484 16 6 2.5933 -3.3963 -1.2481 17 6 2.2242 -4.1983 0.0015 18 6 2.5938 -3.3955 1.2504 19 6 1.8284 -2.0708 1.2501 20 1 0.7568 -2.2703 1.2505 21 6 2.1930 -1.2797 2.4799 22 6 1.2142 -0.9272 3.3903 23 6 1.5486 -0.2020 4.5186 24 6 2.8618 0.1710 4.7363 25 6 3.8396 -0.1765 3.8231 26 6 3.5062 -0.9071 2.6979 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 3.8926 4.4908 0.1401 31 1 0.7561 -2.2707 -1.2482 32 1 2.0912 -1.5004 -2.1386 33 1 2.3303 -3.9681 -2.1381 34 1 3.6649 -3.1968 -1.2484 35 1 1.1526 -4.3979 0.0018 36 1 2.7692 -5.1423 0.0015 37 1 3.6654 -3.1960 1.2501 38 1 2.3305 -3.9667 2.1406 39 1 0.1883 -1.2183 3.2200 40 1 0.7840 0.0737 5.2296 41 1 3.1231 0.7380 5.6177 42 1 4.8648 0.1188 3.9910 43 1 4.2708 -1.1825 1.9867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585088176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:54 Heat of formation + Delta-G solvation = -46.033901 kcal Electronic energy + Delta-G solvation = -24036.822908 eV Core-core repulsion = 20852.126819 eV Total energy + Delta-G solvation = -3184.696089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -41.17499 -39.37554 -38.21175 -35.29832 -34.52504 -33.49401 -31.71872 -31.01835 -29.56582 -28.01032 -27.09013 -24.32289 -23.55684 -23.40606 -21.80663 -21.08359 -20.06722 -18.34154 -17.81168 -17.56601 -16.71100 -16.21223 -15.96232 -15.76488 -15.48888 -15.14137 -14.80660 -14.67509 -14.26019 -14.05209 -13.85245 -13.73971 -13.34430 -13.28379 -13.09671 -12.98737 -12.92713 -12.75120 -12.24103 -12.19294 -12.13612 -12.02089 -11.91836 -11.71523 -11.37390 -11.18315 -11.03553 -10.88495 -9.71172 -9.64628 -9.47747 -8.87157 -8.24039 -6.76088 0.57821 0.60555 1.36633 1.37885 1.52348 2.23824 2.53914 2.92217 2.98822 3.65621 3.70081 3.87687 4.05269 4.13907 4.18111 4.27929 4.31205 4.33893 4.39374 4.49231 4.55054 4.65036 4.68862 4.72302 4.76321 4.89694 4.94927 5.02415 5.05906 5.15534 5.20533 5.22214 5.25931 5.27744 5.34958 5.40835 5.47775 5.54162 5.65019 5.69140 5.84874 5.89705 6.21739 6.23533 6.57566 6.93982 7.55102 8.57154 8.76815 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.007042 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.702164 B = 3974.941205 C = 5019.212285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.637 5.637 3 C 0.550 3.450 4 O -0.626 6.626 5 C -0.571 4.571 6 H 0.086 0.914 7 C 0.032 3.968 8 N -0.821 5.821 9 Si 0.984 3.016 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.247 1.247 13 C 0.157 3.843 14 H 0.046 0.954 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.047 4.047 20 H 0.090 0.910 21 C -0.066 4.066 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.118 4.118 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.270 0.730 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.116 0.884 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 -13.145 4.520 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.372 5.372 3 C 0.355 3.645 4 O -0.513 6.513 5 C -0.607 4.607 6 H 0.104 0.896 7 C -0.182 4.182 8 N -0.451 5.451 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.199 1.199 12 H -0.170 1.170 13 C 0.053 3.947 14 H 0.064 0.936 15 C -0.160 4.160 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.066 4.066 20 H 0.108 0.892 21 C -0.066 4.066 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.635 -13.060 4.508 15.327 hybrid contribution 0.373 1.336 -0.076 1.390 sum -6.262 -11.724 4.432 14.011 Atomic orbital electron populations 1.21498 0.80399 1.02044 1.00438 1.47700 1.06300 1.04666 1.78502 1.18409 0.86513 0.84017 0.75554 1.90528 1.16173 1.87412 1.57156 1.21506 0.94844 0.90349 1.54046 0.89602 1.26854 0.95396 1.04395 0.91578 1.70207 1.09494 1.28269 1.37094 0.85204 0.79297 0.76033 0.79022 1.19165 1.19890 1.17017 1.20734 0.96088 0.83691 0.94201 0.93613 1.21859 1.01515 0.96308 0.96274 1.21507 0.99273 0.94869 0.99456 1.21511 1.02520 0.98022 0.92521 1.21559 0.99154 0.94083 0.99479 1.20543 1.01160 0.94194 0.90725 0.89162 1.19902 0.92847 0.97974 0.95852 1.21242 0.99232 0.99298 0.94491 1.21390 0.96516 0.98274 0.98233 1.21313 0.93599 1.00800 1.00002 1.21262 1.00087 0.98816 0.95390 1.20905 0.96762 0.99183 0.96725 0.94217 0.92453 0.90412 0.92065 0.90069 0.94362 0.89869 0.93511 0.90287 0.90030 0.93414 0.90431 0.84522 0.83793 0.84618 0.86563 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.55 9.24 127.77 1.18 4.73 16 2 N -0.64 -28.68 2.34 -827.67 -1.93 -30.61 16 3 C 0.55 32.07 7.61 86.36 0.66 32.73 16 4 O -0.63 -42.11 14.37 -4.30 -0.06 -42.17 16 5 C -0.57 -32.89 8.76 24.83 0.22 -32.67 16 6 H 0.09 4.49 5.96 -2.91 -0.02 4.47 16 7 C 0.03 1.86 5.49 85.30 0.47 2.33 16 8 N -0.82 -51.46 11.85 21.83 0.26 -51.20 16 9 Si 0.98 42.30 29.56 68.60 2.03 44.33 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 13 C 0.16 6.09 1.79 44.99 0.08 6.17 16 14 H 0.05 2.21 6.14 -2.39 -0.01 2.20 16 15 C -0.12 -3.74 5.18 30.60 0.16 -3.58 16 16 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 17 C -0.11 -2.17 5.92 30.59 0.18 -1.98 16 18 C -0.10 -2.64 5.02 30.59 0.15 -2.49 16 19 C -0.05 -1.46 1.76 -11.54 -0.02 -1.48 16 20 H 0.09 2.46 7.41 -2.39 -0.02 2.44 16 21 C -0.07 -2.37 4.38 -19.86 -0.09 -2.46 16 22 C -0.12 -4.07 9.67 22.27 0.22 -3.85 16 23 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 24 C -0.14 -4.71 10.05 22.27 0.22 -4.49 16 25 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 26 C -0.12 -4.78 8.71 22.27 0.19 -4.59 16 27 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 2.18 6.04 -2.39 -0.01 2.16 16 29 H 0.08 2.18 6.43 -2.39 -0.02 2.16 16 30 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 31 H 0.08 2.13 6.66 -2.39 -0.02 2.11 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.36 7.39 -2.39 -0.02 1.34 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.14 3.67 7.95 -2.92 -0.02 3.65 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 42 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.09 4.09 7.10 -2.91 -0.02 4.07 16 Total: -1.00 -77.76 339.56 5.53 -72.23 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.99 Total: 30.44 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.25 Total: -23.00 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.68 Total: -81.82 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.06 Total: -42.17 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -77.76 5.53 -72.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585088176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.192 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds