Wall clock time and date at job start Tue Mar 31 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46864 * 299.99553 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99440 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42910 * 110.36834 * 299.27491 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.50706 * 109.46840 * 54.48842 * 14 13 12 16 16 C 1.38253 * 120.00391 * 260.00257 * 15 14 13 17 17 C 1.38206 * 119.99891 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.00360 * 359.97438 * 17 16 15 19 19 C 1.38212 * 119.99802 * 359.95583 * 18 17 16 20 20 C 1.38218 * 119.99693 * 79.72628 * 15 14 13 21 21 C 1.50703 * 119.99705 * 0.02562 * 20 15 14 22 22 C 1.53011 * 117.49422 * 188.74250 * 21 20 15 23 23 C 1.53005 * 117.49935 * 120.08559 * 21 20 15 24 24 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 25 25 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 26 26 H 0.96699 * 114.00154 * 60.72676 * 10 9 7 27 27 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 28 28 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 29 29 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 30 30 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 31 31 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 32 32 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 33 33 H 1.08005 * 119.99605 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.99999 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.99616 * 179.97438 * 18 17 16 36 36 H 1.07995 * 120.00037 * 180.02562 * 19 18 17 37 37 H 1.09000 * 115.55165 * 334.41121 * 21 20 15 38 38 H 1.08997 * 117.49668 * 0.02562 * 22 21 20 39 39 H 1.09005 * 117.49292 * 145.01842 * 22 21 20 40 40 H 1.08998 * 117.49713 * 214.97730 * 23 21 20 41 41 H 1.08999 * 117.49744 * 359.97253 * 23 21 20 42 42 H 1.08999 * 110.41133 * 201.79165 * 24 13 12 43 43 H 1.09001 * 110.41003 * 79.35561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4345 -2.6020 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 2.6294 -5.7785 -3.1642 16 6 1.5535 -6.5534 -3.5556 17 6 1.4032 -6.9070 -4.8832 18 6 2.3286 -6.4854 -5.8200 19 6 3.4034 -5.7095 -5.4289 20 6 3.5514 -5.3522 -4.1016 21 6 4.7212 -4.5028 -3.6757 22 6 5.5898 -3.8932 -4.7780 23 6 6.1252 -5.0531 -3.9347 24 6 2.2350 -3.6865 -0.0722 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2334 -1.9069 1.2444 27 1 -0.6629 -2.7545 -1.0032 28 1 0.5035 -1.7313 -1.8934 29 1 0.3255 -4.7428 -1.7457 30 1 0.9060 -3.7050 -3.0847 31 1 3.8468 -5.4538 -1.4416 32 1 2.2154 -6.0739 -1.0916 33 1 0.8308 -6.8830 -2.8237 34 1 0.5629 -7.5127 -5.1889 35 1 2.2112 -6.7621 -6.8573 36 1 4.1260 -5.3798 -6.1607 37 1 4.5702 -3.9145 -2.7707 38 1 5.3149 -4.1061 -5.8110 39 1 6.0105 -2.9039 -4.5978 40 1 6.8979 -4.8265 -3.2001 41 1 6.2027 -6.0297 -4.4126 42 1 3.2146 -3.3920 0.3043 43 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585089229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:11 Heat of formation + Delta-G solvation = -10.238038 kcal Electronic energy + Delta-G solvation = -23257.899269 eV Core-core repulsion = 20074.755405 eV Total energy + Delta-G solvation = -3183.143864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -41.04283 -39.71657 -37.53424 -36.70166 -34.15589 -33.33168 -31.36389 -30.64053 -29.63585 -27.05722 -25.59959 -24.83630 -23.28417 -22.55758 -21.74790 -21.28885 -20.73427 -19.03434 -17.74702 -17.02852 -16.86660 -16.81134 -16.05783 -15.83967 -15.73124 -15.38538 -14.91697 -14.78453 -14.37179 -14.08792 -13.91838 -13.48239 -13.38132 -13.21623 -12.97572 -12.86742 -12.68214 -12.41241 -12.31681 -12.28893 -12.09684 -11.95961 -11.78494 -11.67271 -11.43555 -11.13512 -10.95678 -10.59868 -10.14234 -9.70523 -9.41867 -9.20602 -8.18565 -6.30901 0.45577 0.51251 1.39255 1.42273 1.53219 2.41030 2.69394 3.00525 3.14905 3.36145 3.67678 3.83621 3.93216 3.99006 4.10565 4.19226 4.22203 4.27313 4.31175 4.37840 4.43504 4.50745 4.60023 4.63126 4.74024 4.79563 4.82502 4.83384 5.01434 5.04465 5.16259 5.22677 5.24997 5.29536 5.31416 5.37169 5.62809 5.65452 5.66709 5.77643 5.84718 5.97258 6.14314 6.18418 6.26273 6.73997 7.36795 7.44538 8.87689 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.005042 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.886913 B = 5551.967078 C = 6317.836269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.234 3.766 10 O -0.602 6.602 11 C -0.112 4.112 12 C 0.054 3.946 13 N -0.494 5.494 14 C 0.085 3.915 15 C -0.089 4.089 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.119 4.119 19 C -0.133 4.133 20 C -0.037 4.037 21 C -0.137 4.137 22 C -0.173 4.173 23 C -0.157 4.157 24 C 0.060 3.940 25 H 0.267 0.733 26 H 0.376 0.624 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -12.623 -11.332 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.070 0.930 9 C 0.194 3.806 10 O -0.410 6.410 11 C -0.151 4.151 12 C -0.074 4.074 13 N -0.219 5.219 14 C -0.042 4.042 15 C -0.089 4.089 16 C -0.139 4.139 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.151 4.151 20 C -0.038 4.038 21 C -0.155 4.155 22 C -0.209 4.209 23 C -0.194 4.194 24 C -0.068 4.068 25 H 0.076 0.924 26 H 0.226 0.774 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.050 -12.693 -11.491 18.516 hybrid contribution -0.852 1.156 0.667 1.583 sum 6.198 -11.537 -10.824 16.990 Atomic orbital electron populations 1.69789 1.06764 1.27853 1.51295 1.25665 0.95799 1.02149 0.93822 0.85528 0.78984 0.79629 0.77572 1.19642 1.20619 1.20474 1.21865 0.93244 0.91808 1.50682 0.93016 1.19501 0.86975 0.92281 0.81810 1.86079 1.52044 1.55505 1.47417 1.22636 0.97593 0.96243 0.98659 1.22909 0.88802 0.96615 0.99047 1.65430 1.21098 1.22485 1.12846 1.21227 1.01318 0.88708 0.92976 1.19589 0.95906 0.98736 0.94670 1.21208 0.96928 0.98552 0.97249 1.21351 1.00138 1.00844 0.92583 1.21418 0.94158 0.97553 1.00542 1.21257 0.99405 0.99319 0.95118 1.19104 0.95022 0.96305 0.93324 1.21110 0.90194 1.02653 1.01583 1.23108 1.03019 0.98204 0.96587 1.23049 0.94751 0.98546 1.03054 1.22859 0.99126 0.96300 0.88504 0.92371 0.77403 0.94177 0.93650 0.94185 0.91393 0.89597 0.94143 0.86044 0.84025 0.83610 0.84525 0.87832 0.87443 0.88584 0.88020 0.87941 0.91007 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 10.82 21.45 0.23 -50.15 16 2 C 0.03 1.36 5.02 84.66 0.43 1.79 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -29.76 8.10 25.60 0.21 -29.55 16 8 H 0.05 2.90 7.53 -2.91 -0.02 2.87 16 9 C 0.23 11.97 1.05 -10.65 -0.01 11.96 16 10 O -0.60 -32.30 12.94 -148.98 -1.93 -34.23 16 11 C -0.11 -5.45 5.55 31.49 0.17 -5.27 16 12 C 0.05 2.17 5.21 86.42 0.45 2.62 16 13 N -0.49 -19.29 5.04 -885.57 -4.46 -23.75 16 14 C 0.09 2.71 4.34 85.56 0.37 3.08 16 15 C -0.09 -2.57 4.39 -19.86 -0.09 -2.66 16 16 C -0.12 -3.12 9.02 22.27 0.20 -2.92 16 17 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 18 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 19 C -0.13 -3.05 9.29 22.27 0.21 -2.84 16 20 C -0.04 -1.01 5.61 -19.86 -0.11 -1.12 16 21 C -0.14 -3.70 5.21 -11.53 -0.06 -3.76 16 22 C -0.17 -3.78 9.86 30.62 0.30 -3.48 16 23 C -0.16 -3.26 10.16 30.62 0.31 -2.95 16 24 C 0.06 2.65 5.77 86.45 0.50 3.15 16 25 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.38 20.59 7.33 -74.06 -0.54 20.05 16 27 H 0.04 1.96 7.98 -2.39 -0.02 1.94 16 28 H 0.04 2.42 7.23 -2.39 -0.02 2.41 16 29 H 0.04 1.49 7.85 -2.38 -0.02 1.47 16 30 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 31 H 0.09 2.62 7.26 -2.39 -0.02 2.60 16 32 H 0.04 1.25 7.74 -2.39 -0.02 1.23 16 33 H 0.12 2.94 8.04 -2.91 -0.02 2.92 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.14 2.55 6.03 -2.91 -0.02 2.54 16 37 H 0.10 3.39 6.73 -2.39 -0.02 3.38 16 38 H 0.11 2.02 6.19 -2.39 -0.01 2.00 16 39 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 3.19 7.67 -2.39 -0.02 3.17 16 43 H 0.03 1.48 7.76 -2.39 -0.02 1.46 16 Total: -1.00 -59.93 340.46 -0.34 -60.27 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: 0.46 Total: 39.04 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.33 Total: -36.78 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -4.23 Total: -73.90 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.93 Total: -34.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -59.93 -0.34 -60.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.033 kcal (2) G-P(sol) polarization free energy of solvation -59.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds