Wall clock time and date at job start Tue Mar 31 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47384 * 2 1 4 4 O 1.42903 * 109.47099 * 119.99686 * 2 1 3 5 5 C 1.42910 * 113.99847 * 150.00135 * 4 2 1 6 6 C 1.52995 * 109.47035 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47156 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47062 * 304.99790 * 7 6 5 9 9 O 1.42901 * 109.47157 * 64.99653 * 7 6 5 10 10 C 1.52995 * 109.47057 * 184.99641 * 7 6 5 11 11 N 1.46903 * 109.46872 * 179.97438 * 10 7 6 12 12 C 1.47438 * 110.99840 * 69.87761 * 11 10 7 13 13 C 1.54321 * 107.23409 * 123.25756 * 12 11 10 14 14 C 1.55133 * 103.02043 * 22.28003 * 13 12 11 15 15 O 1.42906 * 110.98879 * 82.47792 * 14 13 12 16 16 C 1.50695 * 110.99384 * 206.25578 * 14 13 12 17 17 H 1.08004 * 120.00264 * 116.90700 * 16 14 13 18 18 C 1.37875 * 120.00039 * 296.90794 * 16 14 13 19 19 N 1.31515 * 120.00049 * 5.05594 * 18 16 14 20 20 Si 1.86806 * 120.00089 * 185.05979 * 18 16 14 21 21 H 1.48493 * 109.47338 * 84.99866 * 20 18 16 22 22 H 1.48506 * 109.46784 * 205.00032 * 20 18 16 23 23 H 1.48498 * 109.46895 * 324.99376 * 20 18 16 24 24 C 1.47845 * 110.99813 * 190.71791 * 11 10 7 25 25 H 1.09008 * 109.47033 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47173 * 59.99920 * 1 2 3 27 27 H 1.09005 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47484 * 239.99539 * 2 1 3 29 29 H 1.08995 * 109.47160 * 59.99901 * 3 2 1 30 30 H 1.08995 * 109.47690 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46502 * 300.00276 * 3 2 1 32 32 H 1.08999 * 109.47010 * 59.99662 * 5 4 2 33 33 H 1.09001 * 109.46848 * 299.99857 * 5 4 2 34 34 H 1.09002 * 109.47315 * 299.99920 * 6 5 4 35 35 H 1.09001 * 109.47294 * 59.99523 * 6 5 4 36 36 H 0.96708 * 113.99826 * 59.99642 * 9 7 6 37 37 H 1.09000 * 109.47306 * 299.99999 * 10 7 6 38 38 H 1.09000 * 109.47311 * 60.00171 * 10 7 6 39 39 H 1.09004 * 109.88886 * 242.66058 * 12 11 10 40 40 H 1.08998 * 109.89004 * 3.85219 * 12 11 10 41 41 H 1.08994 * 110.70593 * 140.66604 * 13 12 11 42 42 H 1.09003 * 110.70454 * 263.90056 * 13 12 11 43 43 H 0.96697 * 114.00113 * 54.62105 * 15 14 13 44 44 H 0.96998 * 119.99930 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.37705 * 332.46977 * 24 11 10 46 46 H 1.09003 * 110.37226 * 94.80851 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2661 -1.3245 0.9887 6 6 3.6755 -2.0090 2.2942 7 6 5.0239 -2.7064 2.1033 8 1 4.9634 -3.3886 1.2553 9 8 6.0356 -1.7278 1.8561 10 6 5.3743 -3.4939 3.3674 11 7 6.6686 -4.1640 3.1838 12 6 7.7714 -3.1856 3.1605 13 6 8.7632 -3.5880 4.2722 14 6 8.4557 -5.0933 4.4869 15 8 9.1311 -5.8971 3.5174 16 6 8.8153 -5.5237 5.8856 17 1 8.0463 -5.8776 6.5563 18 6 10.1261 -5.4656 6.3092 19 7 11.0467 -4.9424 5.5291 20 14 10.5945 -6.1302 7.9910 21 1 10.8394 -7.5916 7.8952 22 1 11.8274 -5.4517 8.4655 23 1 9.4892 -5.8752 8.9494 24 6 6.9223 -5.1333 4.2709 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 4.0200 -0.5873 0.7124 33 1 3.1809 -2.0707 0.1987 34 1 3.7605 -1.2631 3.0845 35 1 2.9214 -2.7462 2.5700 36 1 6.1449 -1.0859 2.5710 37 1 5.4349 -2.8118 4.2154 38 1 4.6027 -4.2404 3.5560 39 1 8.2700 -3.2119 2.1915 40 1 7.3839 -2.1853 3.3535 41 1 9.7918 -3.4483 3.9400 42 1 8.5711 -3.0216 5.1835 43 1 10.0862 -5.7504 3.4814 44 1 11.9688 -4.9013 5.8273 45 1 6.4030 -4.8289 5.1797 46 1 6.6074 -6.1324 3.9696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:42 Heat of formation + Delta-G solvation = -154.927154 kcal Electronic energy + Delta-G solvation = -23632.663300 eV Core-core repulsion = 20135.936326 eV Total energy + Delta-G solvation = -3496.726974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.15811 -38.46443 -37.02753 -34.30984 -33.47802 -32.11795 -31.65057 -29.78280 -28.03273 -27.56071 -26.72395 -24.44398 -22.68373 -21.72577 -21.21303 -20.02378 -19.46641 -17.04872 -16.98892 -16.41756 -16.01976 -15.45552 -15.04879 -14.84930 -14.80397 -14.54045 -14.09114 -13.93437 -13.39996 -12.97358 -12.85043 -12.54757 -12.45250 -12.40790 -12.29199 -11.91718 -11.62932 -11.57232 -11.28334 -11.16881 -11.10341 -11.04583 -10.94958 -10.77322 -10.64589 -10.38724 -10.32650 -9.80373 -9.73966 -9.54579 -9.10588 -8.57001 -8.02783 -7.55350 -6.17527 -4.25009 3.24321 3.30787 3.33119 3.38075 4.30404 4.41477 4.57711 4.65487 4.73391 4.88554 4.89879 5.01762 5.08160 5.20657 5.26603 5.29633 5.35556 5.44254 5.48974 5.54271 5.61299 5.70991 5.81308 5.85010 5.87721 5.90900 5.96259 6.00617 6.19562 6.19821 6.32540 6.58260 6.73258 6.94887 7.07508 7.13549 7.43078 7.53984 7.70103 7.71485 7.82418 7.87959 8.22808 8.76349 9.43229 9.51962 10.89341 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.043410 B = 0.002695 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.860228 B =10387.647425 C =10492.240478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.387 6.387 5 C 0.067 3.933 6 C -0.149 4.149 7 C 0.117 3.883 8 H 0.105 0.895 9 O -0.553 6.553 10 C 0.020 3.980 11 N -0.523 5.523 12 C 0.054 3.946 13 C -0.149 4.149 14 C 0.251 3.749 15 O -0.577 6.577 16 C -0.535 4.535 17 H 0.059 0.941 18 C 0.072 3.928 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.057 3.943 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.369 0.631 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.374 0.626 44 H 0.265 0.735 45 H 0.044 0.956 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 10.531 -8.935 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.307 6.307 5 C -0.009 4.009 6 C -0.187 4.187 7 C 0.057 3.943 8 H 0.123 0.877 9 O -0.359 6.359 10 C -0.109 4.109 11 N -0.247 5.247 12 C -0.074 4.074 13 C -0.188 4.188 14 C 0.211 3.789 15 O -0.384 6.384 16 C -0.574 4.574 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.070 4.070 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.217 0.783 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.222 0.778 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.105 9.762 -9.912 21.282 hybrid contribution 0.952 0.653 2.191 2.476 sum -15.153 10.415 -7.722 19.942 Atomic orbital electron populations 1.21865 0.93779 1.02657 1.02387 1.22050 0.94849 0.92479 0.88352 1.22301 1.01749 0.96830 1.02410 1.87903 1.37111 1.70089 1.35583 1.22466 0.85138 0.95659 0.97676 1.22235 0.98431 1.00667 0.97377 1.21863 0.84644 0.89054 0.98737 0.87740 1.86676 1.57899 1.43953 1.47350 1.22840 0.94410 0.97725 0.95937 1.63521 1.00625 1.15230 1.45347 1.22886 0.91999 0.92756 0.99716 1.23343 0.99275 0.99982 0.96189 1.19524 0.86341 0.86149 0.86873 1.86167 1.24586 1.66646 1.61021 1.21514 0.93654 1.44349 0.97848 0.92278 1.24988 0.96443 0.93965 0.97632 1.69786 1.02018 1.43960 1.37409 0.86520 0.77856 0.79314 0.83733 1.20359 1.21204 1.19969 1.23021 0.97944 0.95308 0.90750 0.91851 0.91382 0.92026 0.92320 0.91850 0.92344 0.91800 0.92638 0.93396 0.90990 0.90243 0.78318 0.94918 0.90612 0.91676 0.94094 0.90517 0.92869 0.77811 0.92485 0.93736 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.56 37.16 0.36 -0.73 16 2 C 0.08 0.70 3.34 -26.73 -0.09 0.62 16 3 C -0.18 -1.37 9.53 37.16 0.35 -1.01 16 4 O -0.39 -4.34 9.99 -35.23 -0.35 -4.70 16 5 C 0.07 0.71 5.64 37.15 0.21 0.92 16 6 C -0.15 -1.60 5.26 -26.73 -0.14 -1.74 16 7 C 0.12 1.49 3.22 -26.73 -0.09 1.41 16 8 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 9 O -0.55 -7.46 10.49 -35.23 -0.37 -7.83 16 10 C 0.02 0.30 4.46 -3.82 -0.02 0.29 16 11 N -0.52 -10.16 5.16 -231.25 -1.19 -11.36 16 12 C 0.05 1.06 5.51 -2.84 -0.02 1.05 16 13 C -0.15 -3.46 5.34 -24.91 -0.13 -3.59 16 14 C 0.25 6.33 0.86 -89.64 -0.08 6.25 16 15 O -0.58 -15.38 13.14 -35.23 -0.46 -15.84 16 16 C -0.54 -14.53 8.25 -34.44 -0.28 -14.81 16 17 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 18 C 0.07 1.94 5.32 -17.82 -0.09 1.84 16 19 N -0.89 -24.12 10.85 55.43 0.60 -23.52 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.60 7.55 -51.93 -0.39 0.20 16 33 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.37 4.05 7.93 45.56 0.36 4.42 16 37 H 0.03 0.49 7.96 -51.93 -0.41 0.07 16 38 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.04 0.70 5.20 -51.93 -0.27 0.43 16 41 H 0.08 1.90 7.47 -51.93 -0.39 1.51 16 42 H 0.05 1.26 8.03 -51.93 -0.42 0.85 16 43 H 0.37 9.91 7.71 45.56 0.35 10.26 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 46 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -29.23 361.54 -8.37 -37.60 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.99 Total: 12.62 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.03 Total: -8.28 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.59 Total: -34.87 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.18 Total: -28.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.23 -8.37 -37.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.327 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds