Wall clock time and date at job start Tue Mar 31 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47384 * 2 1 4 4 O 1.42903 * 109.47099 * 119.99686 * 2 1 3 5 5 C 1.42910 * 113.99847 * 150.00135 * 4 2 1 6 6 C 1.52995 * 109.47035 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47156 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47062 * 304.99790 * 7 6 5 9 9 O 1.42901 * 109.47157 * 64.99653 * 7 6 5 10 10 C 1.52995 * 109.47057 * 184.99641 * 7 6 5 11 11 N 1.46903 * 109.46872 * 179.97438 * 10 7 6 12 12 C 1.47438 * 110.99840 * 69.87761 * 11 10 7 13 13 C 1.54321 * 107.23409 * 123.25756 * 12 11 10 14 14 C 1.55133 * 103.02043 * 22.28003 * 13 12 11 15 15 O 1.42906 * 110.98879 * 82.47792 * 14 13 12 16 16 C 1.50695 * 110.99384 * 206.25578 * 14 13 12 17 17 H 1.08004 * 120.00264 * 116.90700 * 16 14 13 18 18 C 1.37875 * 120.00039 * 296.90794 * 16 14 13 19 19 N 1.31515 * 120.00049 * 5.05594 * 18 16 14 20 20 Si 1.86806 * 120.00089 * 185.05979 * 18 16 14 21 21 H 1.48493 * 109.47338 * 84.99866 * 20 18 16 22 22 H 1.48506 * 109.46784 * 205.00032 * 20 18 16 23 23 H 1.48498 * 109.46895 * 324.99376 * 20 18 16 24 24 C 1.47845 * 110.99813 * 190.71791 * 11 10 7 25 25 H 1.09008 * 109.47033 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47173 * 59.99920 * 1 2 3 27 27 H 1.09005 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47484 * 239.99539 * 2 1 3 29 29 H 1.08995 * 109.47160 * 59.99901 * 3 2 1 30 30 H 1.08995 * 109.47690 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46502 * 300.00276 * 3 2 1 32 32 H 1.08999 * 109.47010 * 59.99662 * 5 4 2 33 33 H 1.09001 * 109.46848 * 299.99857 * 5 4 2 34 34 H 1.09002 * 109.47315 * 299.99920 * 6 5 4 35 35 H 1.09001 * 109.47294 * 59.99523 * 6 5 4 36 36 H 0.96708 * 113.99826 * 59.99642 * 9 7 6 37 37 H 1.09000 * 109.47306 * 299.99999 * 10 7 6 38 38 H 1.09000 * 109.47311 * 60.00171 * 10 7 6 39 39 H 1.09004 * 109.88886 * 242.66058 * 12 11 10 40 40 H 1.08998 * 109.89004 * 3.85219 * 12 11 10 41 41 H 1.08994 * 110.70593 * 140.66604 * 13 12 11 42 42 H 1.09003 * 110.70454 * 263.90056 * 13 12 11 43 43 H 0.96697 * 114.00113 * 54.62105 * 15 14 13 44 44 H 0.96998 * 119.99930 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.37705 * 332.46977 * 24 11 10 46 46 H 1.09003 * 110.37226 * 94.80851 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2661 -1.3245 0.9887 6 6 3.6755 -2.0090 2.2942 7 6 5.0239 -2.7064 2.1033 8 1 4.9634 -3.3886 1.2553 9 8 6.0356 -1.7278 1.8561 10 6 5.3743 -3.4939 3.3674 11 7 6.6686 -4.1640 3.1838 12 6 7.7714 -3.1856 3.1605 13 6 8.7632 -3.5880 4.2722 14 6 8.4557 -5.0933 4.4869 15 8 9.1311 -5.8971 3.5174 16 6 8.8153 -5.5237 5.8856 17 1 8.0463 -5.8776 6.5563 18 6 10.1261 -5.4656 6.3092 19 7 11.0467 -4.9424 5.5291 20 14 10.5945 -6.1302 7.9910 21 1 10.8394 -7.5916 7.8952 22 1 11.8274 -5.4517 8.4655 23 1 9.4892 -5.8752 8.9494 24 6 6.9223 -5.1333 4.2709 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 4.0200 -0.5873 0.7124 33 1 3.1809 -2.0707 0.1987 34 1 3.7605 -1.2631 3.0845 35 1 2.9214 -2.7462 2.5700 36 1 6.1449 -1.0859 2.5710 37 1 5.4349 -2.8118 4.2154 38 1 4.6027 -4.2404 3.5560 39 1 8.2700 -3.2119 2.1915 40 1 7.3839 -2.1853 3.3535 41 1 9.7918 -3.4483 3.9400 42 1 8.5711 -3.0216 5.1835 43 1 10.0862 -5.7504 3.4814 44 1 11.9688 -4.9013 5.8273 45 1 6.4030 -4.8289 5.1797 46 1 6.6074 -6.1324 3.9696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:41 Heat of formation + Delta-G solvation = -177.813465 kcal Electronic energy + Delta-G solvation = -23633.655725 eV Core-core repulsion = 20135.936326 eV Total energy + Delta-G solvation = -3497.719399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.49634 -39.44846 -38.34587 -36.05088 -34.23748 -34.19412 -32.69714 -31.22886 -29.83489 -28.29420 -27.98691 -26.20473 -23.87941 -22.56016 -22.06933 -21.63499 -21.31845 -18.98840 -17.79204 -17.45419 -17.23617 -16.87676 -16.65073 -16.22403 -16.07185 -15.74716 -15.53318 -15.13472 -14.55243 -14.34674 -13.96553 -13.81682 -13.60470 -13.51961 -13.37109 -13.08781 -13.03362 -12.88693 -12.75761 -12.61387 -12.56701 -12.31703 -12.23506 -12.17876 -12.03706 -11.74683 -11.60482 -11.53435 -11.14523 -10.75948 -10.53296 -10.45894 -10.04152 -9.11010 -8.20654 -6.35877 1.39491 1.41954 1.49978 2.37604 2.58966 3.03125 3.20805 3.52319 3.85035 3.97094 4.02194 4.04428 4.11548 4.16734 4.20466 4.26732 4.30615 4.43632 4.45670 4.52212 4.64794 4.72393 4.74724 4.77034 4.85436 4.88034 4.92653 4.94940 4.96390 5.11458 5.14506 5.24047 5.29084 5.33133 5.34423 5.50394 5.56935 5.81688 6.00585 6.25433 6.33638 6.35262 6.69234 6.83249 7.35307 7.43152 8.84404 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.043410 B = 0.002695 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.860228 B =10387.647425 C =10492.240478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.404 6.404 5 C 0.069 3.931 6 C -0.137 4.137 7 C 0.128 3.872 8 H 0.097 0.903 9 O -0.566 6.566 10 C 0.018 3.982 11 N -0.531 5.531 12 C 0.067 3.933 13 C -0.140 4.140 14 C 0.232 3.768 15 O -0.587 6.587 16 C -0.561 4.561 17 H 0.053 0.947 18 C 0.030 3.970 19 N -0.909 5.909 20 Si 0.959 3.041 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.380 0.620 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.369 0.631 44 H 0.267 0.733 45 H 0.050 0.950 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.940 11.402 -8.937 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 C -0.230 4.230 4 O -0.325 6.325 5 C -0.007 4.007 6 C -0.176 4.176 7 C 0.068 3.932 8 H 0.115 0.885 9 O -0.374 6.374 10 C -0.110 4.110 11 N -0.255 5.255 12 C -0.060 4.060 13 C -0.179 4.179 14 C 0.192 3.808 15 O -0.394 6.394 16 C -0.599 4.599 17 H 0.071 0.929 18 C -0.171 4.171 19 N -0.548 5.548 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.063 4.063 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.216 0.784 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.451 10.648 -9.919 22.722 hybrid contribution 1.350 0.395 2.161 2.578 sum -16.102 11.042 -7.758 21.009 Atomic orbital electron populations 1.21874 0.92727 1.02700 1.03151 1.22286 0.95758 0.92800 0.87795 1.22281 1.01284 0.96388 1.03057 1.87874 1.37186 1.70431 1.36971 1.22406 0.85102 0.95641 0.97546 1.22078 0.97117 1.00678 0.97682 1.21701 0.85535 0.88790 0.97133 0.88496 1.86653 1.58240 1.44313 1.48147 1.22992 0.92318 0.98240 0.97493 1.63444 1.02267 1.15456 1.44344 1.22745 0.91383 0.94279 0.97636 1.23151 0.99021 0.98845 0.96885 1.19807 0.88162 0.86892 0.85951 1.86157 1.24328 1.67380 1.61549 1.21797 0.94062 1.45137 0.98924 0.92861 1.25698 0.96384 0.94069 1.00974 1.69878 1.02168 1.44092 1.38661 0.85573 0.77672 0.78494 0.79848 1.20313 1.20586 1.19478 1.22852 0.95719 0.95881 0.91808 0.92285 0.89428 0.92344 0.91798 0.92320 0.93028 0.90045 0.92896 0.93134 0.90521 0.89730 0.76999 0.94128 0.89472 0.92764 0.91122 0.92720 0.93851 0.78360 0.92349 0.93159 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 1.13 3.34 30.59 0.10 1.23 16 3 C -0.17 -2.41 9.53 71.98 0.69 -1.72 16 4 O -0.40 -8.44 9.99 -148.98 -1.49 -9.93 16 5 C 0.07 1.35 5.64 71.98 0.41 1.76 16 6 C -0.14 -2.64 5.26 30.59 0.16 -2.48 16 7 C 0.13 3.01 3.22 30.59 0.10 3.11 16 8 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 9 O -0.57 -14.08 10.49 -148.98 -1.56 -15.64 16 10 C 0.02 0.51 4.46 86.30 0.38 0.89 16 11 N -0.53 -20.01 5.16 -885.54 -4.57 -24.58 16 12 C 0.07 2.59 5.51 86.65 0.48 3.06 16 13 C -0.14 -6.55 5.34 31.77 0.17 -6.38 16 14 C 0.23 11.78 0.86 -10.16 -0.01 11.77 16 15 O -0.59 -31.88 13.14 -148.98 -1.96 -33.84 16 16 C -0.56 -30.68 8.25 25.60 0.21 -30.47 16 17 H 0.05 2.89 7.79 -2.91 -0.02 2.87 16 18 C 0.03 1.59 5.32 84.65 0.45 2.04 16 19 N -0.91 -49.53 10.85 21.45 0.23 -49.30 16 20 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.06 2.84 5.86 86.77 0.51 3.34 16 25 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.94 7.79 -2.39 -0.02 0.92 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.78 7.87 -2.39 -0.02 0.76 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 1.05 7.55 -2.39 -0.02 1.03 16 33 H 0.05 0.95 8.08 -2.39 -0.02 0.93 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.38 7.39 7.93 -74.05 -0.59 6.80 16 37 H 0.04 1.10 7.96 -2.39 -0.02 1.08 16 38 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 39 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.07 2.29 5.20 -2.39 -0.01 2.28 16 41 H 0.05 2.76 7.47 -2.39 -0.02 2.74 16 42 H 0.04 2.06 8.03 -2.39 -0.02 2.05 16 43 H 0.37 20.15 7.71 -74.06 -0.57 19.58 16 44 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.05 2.10 7.70 -2.39 -0.02 2.09 16 46 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -61.72 361.54 -3.19 -64.91 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.21 Total: 38.69 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.34 Total: -15.04 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -4.34 Total: -73.87 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -5.01 Total: -59.41 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.72 -3.19 -64.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.907 kcal (2) G-P(sol) polarization free energy of solvation -61.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds