Wall clock time and date at job start Tue Mar 31 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 O 1.42908 * 109.46965 * 119.99893 * 2 1 3 5 5 C 1.42901 * 113.99789 * 150.00322 * 4 2 1 6 6 C 1.53005 * 109.46624 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46949 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.47019 * 54.99370 * 7 6 5 9 9 O 1.42903 * 109.47159 * 295.00278 * 7 6 5 10 10 C 1.52996 * 109.47190 * 174.99742 * 7 6 5 11 11 N 1.46904 * 109.47327 * 184.99897 * 10 7 6 12 12 C 1.47843 * 110.99640 * 69.15576 * 11 10 7 13 13 C 1.54916 * 104.79337 * 146.36598 * 12 11 10 14 14 C 1.55398 * 101.74107 * 323.02060 * 13 12 11 15 15 O 1.42902 * 110.67651 * 277.17865 * 14 13 12 16 16 C 1.50693 * 110.84773 * 153.86113 * 14 13 12 17 17 H 1.08003 * 120.00166 * 246.46481 * 16 14 13 18 18 C 1.37883 * 119.99850 * 66.46355 * 16 14 13 19 19 N 1.31508 * 119.99898 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47362 * 90.00177 * 20 18 16 22 22 H 1.48504 * 109.46872 * 209.99961 * 20 18 16 23 23 H 1.48499 * 109.47348 * 329.99947 * 20 18 16 24 24 C 1.47439 * 111.00045 * 190.00285 * 11 10 7 25 25 H 1.08993 * 109.47381 * 300.00582 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00656 * 1 2 3 27 27 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47617 * 239.99573 * 2 1 3 29 29 H 1.09005 * 109.47079 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46666 * 299.99495 * 3 2 1 31 31 H 1.08993 * 109.47443 * 59.99455 * 3 2 1 32 32 H 1.08993 * 109.47350 * 59.99936 * 5 4 2 33 33 H 1.09003 * 109.46832 * 299.99623 * 5 4 2 34 34 H 1.08993 * 109.47267 * 59.99937 * 6 5 4 35 35 H 1.08998 * 109.46886 * 299.99696 * 6 5 4 36 36 H 0.96709 * 113.99487 * 299.99974 * 9 7 6 37 37 H 1.09006 * 109.47033 * 65.00159 * 10 7 6 38 38 H 1.08995 * 109.47422 * 304.99894 * 10 7 6 39 39 H 1.08996 * 110.37823 * 265.19398 * 12 11 10 40 40 H 1.09002 * 110.37399 * 27.53914 * 12 11 10 41 41 H 1.08995 * 110.98807 * 81.01940 * 13 12 11 42 42 H 1.08997 * 110.99076 * 204.80412 * 13 12 11 43 43 H 0.96704 * 113.99505 * 293.43296 * 15 14 13 44 44 H 0.97004 * 120.00131 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.88998 * 356.14887 * 24 11 10 46 46 H 1.09003 * 109.88733 * 117.17548 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2660 -1.3245 0.9887 6 6 3.6760 -2.0080 2.2947 7 6 5.0244 -2.7054 2.1039 8 1 5.7578 -1.9851 1.7413 9 8 4.8837 -3.7619 1.1521 10 6 5.4939 -3.2824 3.4408 11 7 6.8412 -3.8466 3.2846 12 6 7.8405 -2.7792 3.0666 13 6 9.1280 -3.2959 3.7559 14 6 8.5503 -4.0153 5.0063 15 8 8.2925 -3.0779 6.0536 16 6 9.4823 -5.1012 5.4786 17 1 9.1808 -6.1365 5.4163 18 6 10.7199 -4.7732 5.9903 19 7 11.0868 -3.5126 6.0666 20 14 11.8755 -6.1194 6.5751 21 1 12.7345 -6.5592 5.4464 22 1 12.7290 -5.5969 7.6723 23 1 11.0817 -7.2720 7.0715 24 6 7.2321 -4.6192 4.4779 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 4.0199 -0.5874 0.7126 33 1 3.1809 -2.0707 0.1987 34 1 2.9221 -2.7450 2.5713 35 1 3.7611 -1.2615 3.0843 36 1 4.2452 -4.4410 1.4098 37 1 4.8065 -4.0660 3.7598 38 1 5.5160 -2.4913 4.1903 39 1 8.0135 -2.6332 2.0004 40 1 7.5095 -1.8492 3.5290 41 1 9.6592 -3.9988 3.1143 42 1 9.7755 -2.4679 4.0447 43 1 9.0885 -2.6694 6.4205 44 1 11.9576 -3.2818 6.4262 45 1 6.4569 -4.5417 5.2403 46 1 7.3846 -5.6646 4.2093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:46 Heat of formation + Delta-G solvation = -159.947178 kcal Electronic energy + Delta-G solvation = -23572.659558 eV Core-core repulsion = 20075.714899 eV Total energy + Delta-G solvation = -3496.944659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.03750 -38.42728 -37.08120 -34.45699 -33.43129 -32.07153 -31.53447 -29.88053 -28.15756 -27.54425 -26.67792 -24.37290 -22.71825 -21.71320 -21.26407 -20.01239 -19.41033 -17.14393 -17.03605 -16.32360 -16.19924 -15.26305 -15.03557 -14.90035 -14.86905 -14.47312 -13.95178 -13.81786 -13.45983 -13.24469 -12.79506 -12.75903 -12.50478 -12.21791 -11.98790 -11.87758 -11.77954 -11.51671 -11.33492 -11.28913 -11.19073 -10.94918 -10.88439 -10.58990 -10.55853 -10.44549 -10.32637 -10.01651 -9.73560 -9.64500 -9.22877 -8.61605 -8.09145 -7.59388 -6.21135 -4.27944 3.23161 3.30172 3.34069 3.39634 4.30379 4.41619 4.60459 4.69719 4.74953 4.86663 4.93345 5.02403 5.05768 5.15793 5.27903 5.30878 5.37392 5.47098 5.51389 5.55057 5.62448 5.70487 5.76626 5.86440 5.92752 5.95730 6.00680 6.05701 6.14793 6.27089 6.32431 6.44221 6.55954 6.95700 7.07868 7.09278 7.42860 7.48601 7.66290 7.75446 7.83111 7.88614 8.15043 8.73483 9.39854 9.52184 10.86210 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.044789 B = 0.002705 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.005365 B =10349.299201 C =10538.966093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.387 6.387 5 C 0.067 3.933 6 C -0.150 4.150 7 C 0.117 3.883 8 H 0.097 0.903 9 O -0.549 6.549 10 C 0.023 3.977 11 N -0.520 5.520 12 C 0.040 3.960 13 C -0.131 4.131 14 C 0.236 3.764 15 O -0.593 6.593 16 C -0.530 4.530 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.057 3.943 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.370 0.630 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.384 0.616 44 H 0.267 0.733 45 H 0.044 0.956 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 6.469 -10.610 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.306 6.306 5 C -0.009 4.009 6 C -0.188 4.188 7 C 0.057 3.943 8 H 0.115 0.885 9 O -0.354 6.354 10 C -0.107 4.107 11 N -0.244 5.244 12 C -0.087 4.087 13 C -0.170 4.170 14 C 0.196 3.804 15 O -0.403 6.403 16 C -0.569 4.569 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.070 4.070 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.216 0.784 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.235 0.765 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.042 6.430 -11.249 20.621 hybrid contribution 1.082 -0.157 1.270 1.676 sum -14.960 6.273 -9.979 19.046 Atomic orbital electron populations 1.21860 0.93769 1.02641 1.02388 1.22055 0.94871 0.92461 0.88371 1.22305 1.01702 0.96864 1.02456 1.87906 1.37061 1.70096 1.35571 1.22463 0.85019 0.95316 0.98108 1.22245 0.98175 1.00855 0.97536 1.21825 0.94310 0.88807 0.89336 0.88509 1.86590 1.66067 1.36330 1.46388 1.22928 0.92925 0.98795 0.96018 1.63636 1.00445 1.22477 1.37819 1.23090 0.93706 0.92639 0.99275 1.23207 0.94854 1.00489 0.98452 1.19758 0.89725 0.86743 0.84179 1.86068 1.38412 1.61017 1.54840 1.21607 1.00103 0.93466 1.41692 0.91928 1.25020 0.97747 0.95831 0.94702 1.69589 1.21739 1.16390 1.46310 0.86443 0.80450 0.81796 0.78414 1.20500 1.21124 1.19775 1.22850 0.97313 0.97736 0.89107 0.91835 0.91397 0.92037 0.92297 0.92411 0.91775 0.91798 0.93512 0.92599 0.90813 0.90294 0.78393 0.91176 0.93932 0.92044 0.94704 0.91803 0.91008 0.76478 0.92298 0.93731 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 2 C 0.08 0.72 3.34 -26.73 -0.09 0.63 16 3 C -0.18 -1.41 9.53 37.16 0.35 -1.06 16 4 O -0.39 -4.46 9.99 -35.23 -0.35 -4.81 16 5 C 0.07 0.74 5.64 37.16 0.21 0.95 16 6 C -0.15 -1.69 5.26 -26.73 -0.14 -1.83 16 7 C 0.12 1.56 3.00 -26.73 -0.08 1.48 16 8 H 0.10 1.39 7.34 -51.93 -0.38 1.00 16 9 O -0.55 -7.46 12.82 -35.23 -0.45 -7.91 16 10 C 0.02 0.36 4.20 -3.82 -0.02 0.34 16 11 N -0.52 -10.09 5.11 -231.25 -1.18 -11.27 16 12 C 0.04 0.81 5.71 -2.29 -0.01 0.80 16 13 C -0.13 -3.08 5.68 -24.45 -0.14 -3.22 16 14 C 0.24 5.92 0.86 -89.81 -0.08 5.84 16 15 O -0.59 -15.57 13.09 -35.23 -0.46 -16.03 16 16 C -0.53 -14.31 8.22 -34.44 -0.28 -14.59 16 17 H 0.06 1.68 7.53 -52.48 -0.40 1.28 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 19 N -0.90 -24.16 10.72 55.43 0.59 -23.57 16 20 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.06 1.26 6.21 -2.84 -0.02 1.24 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 29 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.50 7.87 -51.93 -0.41 0.10 16 33 H 0.06 0.60 7.77 -51.93 -0.40 0.20 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.37 3.80 9.05 45.56 0.41 4.21 16 37 H 0.07 1.02 8.03 -51.93 -0.42 0.61 16 38 H 0.04 0.72 7.85 -51.93 -0.41 0.31 16 39 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 40 H 0.03 0.69 7.62 -51.93 -0.40 0.29 16 41 H 0.06 1.55 8.04 -51.93 -0.42 1.13 16 42 H 0.07 1.77 7.78 -51.93 -0.40 1.36 16 43 H 0.38 10.29 6.99 45.56 0.32 10.61 16 44 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.04 0.97 7.47 -51.93 -0.39 0.58 16 46 H 0.08 1.75 7.63 -51.93 -0.40 1.35 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -28.91 365.14 -8.42 -37.32 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.01 Total: 13.46 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.03 Total: -8.45 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.59 Total: -34.84 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.26 Total: -28.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.91 -8.42 -37.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.624 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds