Wall clock time and date at job start Tue Mar 31 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 O 1.42908 * 109.46965 * 119.99893 * 2 1 3 5 5 C 1.42901 * 113.99789 * 150.00322 * 4 2 1 6 6 C 1.53005 * 109.46624 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46949 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.47019 * 54.99370 * 7 6 5 9 9 O 1.42903 * 109.47159 * 295.00278 * 7 6 5 10 10 C 1.52996 * 109.47190 * 174.99742 * 7 6 5 11 11 N 1.46904 * 109.47327 * 184.99897 * 10 7 6 12 12 C 1.47843 * 110.99640 * 69.15576 * 11 10 7 13 13 C 1.54916 * 104.79337 * 146.36598 * 12 11 10 14 14 C 1.55398 * 101.74107 * 323.02060 * 13 12 11 15 15 O 1.42902 * 110.67651 * 277.17865 * 14 13 12 16 16 C 1.50693 * 110.84773 * 153.86113 * 14 13 12 17 17 H 1.08003 * 120.00166 * 246.46481 * 16 14 13 18 18 C 1.37883 * 119.99850 * 66.46355 * 16 14 13 19 19 N 1.31508 * 119.99898 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47362 * 90.00177 * 20 18 16 22 22 H 1.48504 * 109.46872 * 209.99961 * 20 18 16 23 23 H 1.48499 * 109.47348 * 329.99947 * 20 18 16 24 24 C 1.47439 * 111.00045 * 190.00285 * 11 10 7 25 25 H 1.08993 * 109.47381 * 300.00582 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00656 * 1 2 3 27 27 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47617 * 239.99573 * 2 1 3 29 29 H 1.09005 * 109.47079 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46666 * 299.99495 * 3 2 1 31 31 H 1.08993 * 109.47443 * 59.99455 * 3 2 1 32 32 H 1.08993 * 109.47350 * 59.99936 * 5 4 2 33 33 H 1.09003 * 109.46832 * 299.99623 * 5 4 2 34 34 H 1.08993 * 109.47267 * 59.99937 * 6 5 4 35 35 H 1.08998 * 109.46886 * 299.99696 * 6 5 4 36 36 H 0.96709 * 113.99487 * 299.99974 * 9 7 6 37 37 H 1.09006 * 109.47033 * 65.00159 * 10 7 6 38 38 H 1.08995 * 109.47422 * 304.99894 * 10 7 6 39 39 H 1.08996 * 110.37823 * 265.19398 * 12 11 10 40 40 H 1.09002 * 110.37399 * 27.53914 * 12 11 10 41 41 H 1.08995 * 110.98807 * 81.01940 * 13 12 11 42 42 H 1.08997 * 110.99076 * 204.80412 * 13 12 11 43 43 H 0.96704 * 113.99505 * 293.43296 * 15 14 13 44 44 H 0.97004 * 120.00131 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.88998 * 356.14887 * 24 11 10 46 46 H 1.09003 * 109.88733 * 117.17548 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2660 -1.3245 0.9887 6 6 3.6760 -2.0080 2.2947 7 6 5.0244 -2.7054 2.1039 8 1 5.7578 -1.9851 1.7413 9 8 4.8837 -3.7619 1.1521 10 6 5.4939 -3.2824 3.4408 11 7 6.8412 -3.8466 3.2846 12 6 7.8405 -2.7792 3.0666 13 6 9.1280 -3.2959 3.7559 14 6 8.5503 -4.0153 5.0063 15 8 8.2925 -3.0779 6.0536 16 6 9.4823 -5.1012 5.4786 17 1 9.1808 -6.1365 5.4163 18 6 10.7199 -4.7732 5.9903 19 7 11.0868 -3.5126 6.0666 20 14 11.8755 -6.1194 6.5751 21 1 12.7345 -6.5592 5.4464 22 1 12.7290 -5.5969 7.6723 23 1 11.0817 -7.2720 7.0715 24 6 7.2321 -4.6192 4.4779 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 4.0199 -0.5874 0.7126 33 1 3.1809 -2.0707 0.1987 34 1 2.9221 -2.7450 2.5713 35 1 3.7611 -1.2615 3.0843 36 1 4.2452 -4.4410 1.4098 37 1 4.8065 -4.0660 3.7598 38 1 5.5160 -2.4913 4.1903 39 1 8.0135 -2.6332 2.0004 40 1 7.5095 -1.8492 3.5290 41 1 9.6592 -3.9988 3.1143 42 1 9.7755 -2.4679 4.0447 43 1 9.0885 -2.6694 6.4205 44 1 11.9576 -3.2818 6.4262 45 1 6.4569 -4.5417 5.2403 46 1 7.3846 -5.6646 4.2093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:46 Heat of formation + Delta-G solvation = -182.703978 kcal Electronic energy + Delta-G solvation = -23573.646367 eV Core-core repulsion = 20075.714899 eV Total energy + Delta-G solvation = -3497.931468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41139 -39.48151 -38.33059 -36.21846 -34.19922 -34.13488 -32.63818 -31.33803 -29.95331 -28.28167 -27.98848 -26.13592 -23.98013 -22.63504 -22.15232 -21.57300 -21.25350 -19.14953 -17.84521 -17.55853 -17.15356 -16.92465 -16.51164 -16.24541 -15.99876 -15.73660 -15.67749 -14.97927 -14.70549 -14.50760 -13.89222 -13.82022 -13.59637 -13.49585 -13.37724 -13.21038 -13.07755 -12.90291 -12.70051 -12.63167 -12.42587 -12.34316 -12.31899 -12.09553 -12.02001 -11.88638 -11.71655 -11.54073 -11.21314 -10.82705 -10.62638 -10.48811 -10.10042 -9.19222 -8.23165 -6.37846 1.40278 1.42091 1.51877 2.37847 2.57044 3.00884 3.13855 3.61009 3.76998 3.88577 3.97113 4.04846 4.11244 4.15906 4.22286 4.29559 4.30149 4.39860 4.43530 4.51239 4.57820 4.64384 4.72648 4.75774 4.76751 4.85421 4.88237 4.91739 4.94375 5.09802 5.10880 5.21495 5.27092 5.28719 5.33242 5.47458 5.52764 5.79538 5.94744 6.18219 6.24466 6.33241 6.66596 6.95141 7.32816 7.42240 8.82369 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.044789 B = 0.002705 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.005365 B =10349.299201 C =10538.966093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 C -0.174 4.174 4 O -0.404 6.404 5 C 0.071 3.929 6 C -0.140 4.140 7 C 0.131 3.869 8 H 0.088 0.912 9 O -0.561 6.561 10 C 0.021 3.979 11 N -0.519 5.519 12 C 0.052 3.948 13 C -0.125 4.125 14 C 0.220 3.780 15 O -0.599 6.599 16 C -0.557 4.557 17 H 0.057 0.943 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.962 3.038 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.272 1.272 24 C 0.064 3.936 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.385 0.615 37 H 0.085 0.915 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.377 0.623 44 H 0.270 0.730 45 H 0.044 0.956 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 6.349 -11.541 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 C -0.231 4.231 4 O -0.325 6.325 5 C -0.006 4.006 6 C -0.178 4.178 7 C 0.071 3.929 8 H 0.106 0.894 9 O -0.368 6.368 10 C -0.108 4.108 11 N -0.243 5.243 12 C -0.076 4.076 13 C -0.164 4.164 14 C 0.180 3.820 15 O -0.409 6.409 16 C -0.595 4.595 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.063 4.063 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.228 0.772 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.094 6.308 -12.190 21.923 hybrid contribution 1.369 -0.107 1.546 2.068 sum -15.725 6.201 -10.644 19.976 Atomic orbital electron populations 1.21869 0.92652 1.02745 1.03139 1.22298 0.95825 0.92729 0.87806 1.22296 1.01253 0.96491 1.03099 1.87878 1.37109 1.70445 1.37052 1.22392 0.85071 0.95353 0.97768 1.22102 0.97153 1.00825 0.97741 1.21599 0.95088 0.88579 0.87643 0.89444 1.86561 1.66858 1.36899 1.46441 1.23064 0.91152 0.99024 0.97514 1.63656 1.01887 1.22464 1.36256 1.22987 0.92087 0.92630 0.99882 1.23023 0.96005 0.99391 0.98024 1.20015 0.91278 0.86477 0.84277 1.86059 1.38099 1.61282 1.55440 1.21883 1.01157 0.93748 1.42713 0.92518 1.25728 0.99010 0.97890 0.94698 1.69671 1.22056 1.17616 1.46267 0.85497 0.78485 0.79265 0.77996 1.20052 1.20603 1.19621 1.22706 0.95882 0.97811 0.89947 0.92355 0.89382 0.92256 0.91645 0.93095 0.89905 0.92395 0.93580 0.92320 0.89826 0.90662 0.76649 0.89662 0.94799 0.90285 0.94502 0.93171 0.92850 0.77202 0.92096 0.93747 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.56 71.98 0.69 -1.23 16 2 C 0.07 1.16 3.34 30.59 0.10 1.26 16 3 C -0.17 -2.54 9.53 71.98 0.69 -1.85 16 4 O -0.40 -8.77 9.99 -148.98 -1.49 -10.25 16 5 C 0.07 1.44 5.64 71.98 0.41 1.84 16 6 C -0.14 -2.91 5.26 30.60 0.16 -2.75 16 7 C 0.13 3.24 3.00 30.59 0.09 3.33 16 8 H 0.09 2.36 7.34 -2.38 -0.02 2.34 16 9 O -0.56 -13.97 12.82 -148.98 -1.91 -15.89 16 10 C 0.02 0.63 4.20 86.30 0.36 1.00 16 11 N -0.52 -19.57 5.11 -885.52 -4.53 -24.09 16 12 C 0.05 2.03 5.71 86.78 0.50 2.53 16 13 C -0.13 -5.95 5.68 32.07 0.18 -5.76 16 14 C 0.22 11.10 0.86 -10.27 -0.01 11.09 16 15 O -0.60 -31.87 13.09 -148.98 -1.95 -33.82 16 16 C -0.56 -30.34 8.22 25.60 0.21 -30.13 16 17 H 0.06 3.07 7.53 -2.91 -0.02 3.05 16 18 C 0.03 1.42 5.29 84.66 0.45 1.87 16 19 N -0.92 -49.54 10.72 21.45 0.23 -49.31 16 20 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.06 2.81 6.21 86.65 0.54 3.35 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 28 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 29 H 0.05 0.80 7.87 -2.38 -0.02 0.78 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.93 7.87 -2.39 -0.02 0.92 16 33 H 0.06 1.16 7.77 -2.39 -0.02 1.14 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.38 6.93 9.05 -74.05 -0.67 6.26 16 37 H 0.09 2.31 8.03 -2.38 -0.02 2.29 16 38 H 0.03 1.10 7.85 -2.39 -0.02 1.08 16 39 H 0.08 2.84 8.12 -2.39 -0.02 2.82 16 40 H 0.04 1.43 7.62 -2.39 -0.02 1.41 16 41 H 0.05 2.46 8.04 -2.39 -0.02 2.44 16 42 H 0.05 2.68 7.78 -2.39 -0.02 2.66 16 43 H 0.38 20.68 6.99 -74.05 -0.52 20.17 16 44 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.04 1.91 7.47 -2.39 -0.02 1.89 16 46 H 0.08 3.33 7.63 -2.39 -0.02 3.31 16 Total: -1.00 -60.65 365.14 -3.49 -64.14 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.24 Total: 40.09 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.36 Total: -15.46 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -4.30 Total: -73.41 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -5.35 Total: -59.96 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -60.65 -3.49 -64.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.563 kcal (2) G-P(sol) polarization free energy of solvation -60.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds