Wall clock time and date at job start Tue Mar 31 2020 03:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00137 * 2 1 4 4 C 1.52997 * 109.47418 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.99339 * 294.64617 * 4 3 2 6 6 C 1.54321 * 109.88204 * 173.55080 * 4 3 2 7 7 C 1.55157 * 103.10033 * 218.29831 * 6 4 3 8 8 H 1.09001 * 111.00741 * 277.51995 * 7 6 4 9 9 F 1.39902 * 111.00487 * 153.66158 * 7 6 4 10 10 C 1.55392 * 101.36576 * 35.49711 * 7 6 4 11 11 N 1.47019 * 109.88144 * 55.73830 * 4 3 2 12 12 C 1.34778 * 125.65277 * 298.39270 * 11 4 3 13 13 O 1.21279 * 119.99640 * 0.02562 * 12 11 4 14 14 C 1.50696 * 120.00123 * 180.02562 * 12 11 4 15 15 H 1.09000 * 109.47133 * 320.00061 * 14 12 11 16 16 N 1.46900 * 109.47036 * 200.00274 * 14 12 11 17 17 C 1.52997 * 109.47185 * 80.00234 * 14 12 11 18 18 C 1.52998 * 109.47063 * 184.99866 * 17 14 12 19 19 C 1.50704 * 109.46913 * 180.02562 * 18 17 14 20 20 H 1.08005 * 120.00011 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99831 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99738 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47293 * 60.00046 * 23 21 19 25 25 H 1.48502 * 109.46831 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47337 * 299.99741 * 23 21 19 27 27 H 1.09002 * 109.46756 * 299.99477 * 1 2 3 28 28 H 1.08997 * 109.47466 * 59.99414 * 1 2 3 29 29 H 1.09005 * 109.46837 * 179.97438 * 1 2 3 30 30 H 1.00897 * 111.00129 * 123.95714 * 2 1 3 31 31 H 1.09008 * 109.46545 * 60.00367 * 3 2 1 32 32 H 1.08999 * 109.47547 * 300.00722 * 3 2 1 33 33 H 1.09002 * 110.72109 * 336.75211 * 6 4 3 34 34 H 1.09003 * 110.72356 * 99.85036 * 6 4 3 35 35 H 1.08999 * 110.34334 * 204.17153 * 10 7 6 36 36 H 1.08998 * 110.44545 * 81.91304 * 10 7 6 37 37 H 1.00906 * 110.99925 * 300.00412 * 16 14 12 38 38 H 1.00898 * 110.99865 * 63.95178 * 16 14 12 39 39 H 1.08997 * 109.47257 * 305.00065 * 17 14 12 40 40 H 1.09000 * 109.46848 * 64.99694 * 17 14 12 41 41 H 1.08998 * 109.47305 * 299.99652 * 18 17 14 42 42 H 1.09000 * 109.47429 * 60.00184 * 18 17 14 43 43 H 0.96994 * 119.99907 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3307 -0.0006 5 1 3.8865 0.8936 0.9301 6 6 4.0879 2.7582 -0.1637 7 6 5.3173 2.5482 -1.0867 8 1 6.1863 2.2265 -0.5128 9 9 5.6013 3.7082 -1.8154 10 6 4.8112 1.4107 -2.0166 11 7 4.0035 0.5394 -1.1436 12 6 3.7460 -0.7660 -1.3583 13 8 3.0650 -1.3872 -0.5701 14 6 4.3042 -1.4536 -2.5775 15 1 4.2385 -0.7834 -3.4346 16 7 3.5311 -2.6728 -2.8490 17 6 5.7681 -1.8225 -2.3296 18 6 6.3704 -2.4072 -3.6087 19 6 7.8122 -2.7712 -3.3643 20 1 8.2546 -2.6028 -2.3935 21 6 8.5663 -3.3203 -4.3796 22 7 8.0271 -3.5268 -5.5613 23 14 10.3532 -3.7721 -4.0764 24 1 10.4314 -4.7783 -2.9871 25 1 10.9378 -4.3396 -5.3180 26 1 11.1112 -2.5572 -3.6834 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8306 -0.5261 0.7813 31 1 1.6460 1.8947 0.8901 32 1 1.6459 1.8949 -0.8899 33 1 3.3551 3.4098 -0.6396 34 1 4.3945 3.1644 0.8003 35 1 5.6536 0.8567 -2.4306 36 1 4.1961 1.8196 -2.8182 37 1 3.5762 -3.3109 -2.0686 38 1 2.5743 -2.4505 -3.0794 39 1 6.3239 -0.9303 -2.0411 40 1 5.8262 -2.5610 -1.5300 41 1 5.8147 -3.2995 -3.8971 42 1 6.3123 -1.6687 -4.4083 43 1 8.5577 -3.9127 -6.2757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592334977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:09 Heat of formation + Delta-G solvation = -93.232592 kcal Electronic energy + Delta-G solvation = -24054.941651 eV Core-core repulsion = 20469.722400 eV Total energy + Delta-G solvation = -3585.219251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.175 amu Computer time = 5.09 seconds Orbital eigenvalues (eV) -48.64828 -41.29225 -38.64490 -36.82179 -36.23900 -34.73841 -32.44937 -31.85647 -30.85678 -28.10318 -27.05827 -25.66074 -24.49480 -23.09169 -22.42597 -21.59330 -19.98341 -18.64562 -18.30050 -18.08491 -17.02028 -16.76696 -16.44846 -16.27856 -16.12215 -15.91335 -15.56494 -15.20319 -15.06449 -14.68729 -14.30807 -14.26527 -13.84817 -13.74248 -13.62460 -13.37481 -13.18748 -12.99578 -12.74993 -12.60096 -12.46874 -12.26565 -12.15468 -11.79518 -11.68076 -11.56829 -11.48149 -11.15565 -10.78514 -10.46217 -9.69793 -9.48503 -8.96259 -8.11531 -6.22099 1.43185 1.45926 1.53530 1.80119 1.96552 2.46364 3.11524 3.21402 3.23415 3.42287 3.53895 3.73908 3.85907 3.92187 4.03787 4.17265 4.24499 4.37331 4.40981 4.44794 4.50181 4.58259 4.61325 4.65131 4.79230 4.84992 4.97700 4.98505 4.99854 5.14542 5.27218 5.41278 5.58915 5.86409 6.00929 6.17536 6.18995 6.32324 6.55847 6.56642 6.59438 6.96580 7.35522 7.46068 8.99553 Molecular weight = 287.18amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.004420 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.205836 B = 6333.992393 C = 7498.958580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.683 5.683 3 C 0.052 3.948 4 C 0.136 3.864 5 H 0.076 0.924 6 C -0.137 4.137 7 C 0.082 3.918 8 H 0.116 0.884 9 F -0.208 7.208 10 C 0.068 3.932 11 N -0.606 5.606 12 C 0.510 3.490 13 O -0.522 6.522 14 C 0.090 3.910 15 H 0.090 0.910 16 N -0.817 5.817 17 C -0.079 4.079 18 C 0.041 3.959 19 C -0.543 4.543 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.959 3.041 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.024 0.976 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.347 0.653 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.345 0.655 38 H 0.344 0.656 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.004 0.996 42 H -0.011 1.011 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 14.877 13.228 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.318 5.318 3 C -0.078 4.078 4 C 0.032 3.968 5 H 0.094 0.906 6 C -0.175 4.175 7 C 0.045 3.955 8 H 0.134 0.866 9 F -0.189 7.189 10 C -0.056 4.056 11 N -0.342 5.342 12 C 0.297 3.703 13 O -0.397 6.397 14 C -0.026 4.026 15 H 0.108 0.892 16 N -0.346 5.346 17 C -0.117 4.117 18 C 0.004 3.996 19 C -0.581 4.581 20 H 0.075 0.925 21 C -0.195 4.195 22 N -0.571 5.571 23 Si 0.784 3.216 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.023 0.977 42 H 0.008 0.992 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.451 14.181 12.167 21.915 hybrid contribution 0.050 0.167 1.240 1.252 sum -11.401 14.349 13.407 22.707 Atomic orbital electron populations 1.22152 0.88515 1.01370 0.99817 1.60841 1.06804 1.12516 1.51591 1.22417 0.93588 0.90768 1.01009 1.21710 0.94013 0.91053 0.90036 0.90633 1.23240 0.96728 0.95167 1.02392 1.22774 0.99914 0.81117 0.91666 0.86594 1.92818 1.95128 1.51074 1.79837 1.23017 0.96227 0.92305 0.94035 1.48293 1.52018 1.08671 1.25203 1.21566 0.79624 0.80717 0.88422 1.90541 1.37738 1.63788 1.47591 1.21504 0.95025 0.91891 0.94196 0.89190 1.58987 1.17358 1.13120 1.45146 1.21362 0.91442 0.99821 0.99083 1.18807 0.93674 0.95080 0.92083 1.21702 0.97873 1.41124 0.97415 0.92528 1.25901 1.02982 0.95746 0.94921 1.70106 1.38233 1.45382 1.03352 0.85600 0.79710 0.78865 0.77450 1.19536 1.21033 1.19039 0.95721 0.92605 0.92212 0.83160 0.93078 0.91507 0.88366 0.86379 0.89752 0.89987 0.84130 0.84262 0.91835 0.93761 0.97750 0.99218 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.70 127.69 1.37 1.96 16 2 N -0.68 -15.52 3.68 -537.13 -1.97 -17.50 16 3 C 0.05 0.94 5.29 86.30 0.46 1.40 16 4 C 0.14 2.44 3.29 45.34 0.15 2.59 16 5 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.14 -1.73 6.27 31.78 0.20 -1.53 16 7 C 0.08 1.40 4.89 32.16 0.16 1.55 16 8 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 9 F -0.21 -4.28 17.25 44.97 0.78 -3.51 16 10 C 0.07 1.49 6.22 87.02 0.54 2.03 16 11 N -0.61 -14.45 3.07 -787.10 -2.41 -16.86 16 12 C 0.51 15.31 6.64 87.66 0.58 15.89 16 13 O -0.52 -16.91 12.35 -3.03 -0.04 -16.95 16 14 C 0.09 3.06 2.43 44.17 0.11 3.16 16 15 H 0.09 3.08 7.68 -2.39 -0.02 3.06 16 16 N -0.82 -28.29 8.44 -171.81 -1.45 -29.74 16 17 C -0.08 -3.19 4.64 30.59 0.14 -3.05 16 18 C 0.04 2.14 4.86 29.85 0.15 2.29 16 19 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 20 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 21 C 0.00 0.13 5.46 84.65 0.46 0.59 16 22 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 23 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.35 8.55 7.40 -89.70 -0.66 7.89 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 33 H 0.10 1.14 7.78 -2.39 -0.02 1.12 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 2.12 6.05 -2.39 -0.01 2.11 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.35 11.98 8.58 -89.69 -0.77 11.21 16 38 H 0.34 10.58 9.06 -89.70 -0.81 9.76 16 39 H 0.06 2.39 6.59 -2.39 -0.02 2.37 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -67.26 345.13 0.54 -66.72 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -1.22 Total: 32.02 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.54 Total: -3.78 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -5.55 Total: -120.99 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.04 Total: -16.95 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.26 0.54 -66.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592334977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.510 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.10 seconds