Wall clock time and date at job start Tue Mar 31 2020 04:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99662 * 2 1 4 4 H 1.48504 * 109.47318 * 239.99945 * 3 2 1 5 5 H 1.48506 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47177 * 120.00184 * 3 2 1 7 7 C 1.38803 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00157 * 162.55874 * 7 2 1 9 9 N 1.36932 * 120.00220 * 342.83014 * 7 2 1 10 10 C 1.46960 * 120.59745 * 151.29535 * 9 7 2 11 11 C 1.53812 * 108.40456 * 124.75847 * 10 9 7 12 12 N 1.46968 * 108.57577 * 49.63365 * 11 10 9 13 13 C 1.34780 * 120.59114 * 124.62970 * 12 11 10 14 14 O 1.21279 * 119.99704 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99841 * 0.02562 * 13 12 11 16 16 C 1.53039 * 113.14689 * 280.54161 * 15 13 12 17 17 S 1.81499 * 89.86534 * 211.86992 * 16 15 13 18 18 O 1.42094 * 112.71705 * 280.43537 * 17 16 15 19 19 O 1.42096 * 112.85869 * 136.68381 * 17 16 15 20 20 C 1.53047 * 113.14844 * 180.12000 * 15 13 12 21 21 C 1.46964 * 118.81555 * 304.65082 * 12 11 10 22 22 C 1.46969 * 120.58959 * 331.56903 * 9 7 2 23 23 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.60875 * 244.53869 * 10 9 7 25 25 H 1.08995 * 109.60997 * 5.04494 * 10 9 7 26 26 H 1.08999 * 109.73719 * 289.85273 * 11 10 9 27 27 H 1.08994 * 109.68064 * 169.38304 * 11 10 9 28 28 H 1.08991 * 112.50167 * 50.33048 * 15 13 12 29 29 H 1.09003 * 113.15451 * 327.11957 * 16 15 13 30 30 H 1.09006 * 113.14722 * 96.60111 * 16 15 13 31 31 H 1.09003 * 113.14269 * 263.40053 * 20 15 13 32 32 H 1.08998 * 113.15047 * 32.84103 * 20 15 13 33 33 H 1.09006 * 109.60531 * 295.48539 * 21 12 11 34 34 H 1.08997 * 109.61145 * 174.97568 * 21 12 11 35 35 H 1.08994 * 109.61249 * 354.94911 * 22 9 7 36 36 H 1.08997 * 109.60767 * 115.46065 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7466 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0531 -1.2234 -0.2809 9 7 1.3714 -2.3617 0.3490 10 6 1.8067 -3.6516 -0.2046 11 6 2.1103 -4.6041 0.9643 12 7 0.9733 -4.5803 1.8952 13 6 0.3439 -5.7215 2.2385 14 8 -0.5936 -5.6893 3.0073 15 6 0.8051 -7.0376 1.6672 16 6 0.3053 -7.2828 0.2417 17 16 0.2505 -9.0666 0.5723 18 8 1.5292 -9.6803 0.4858 19 8 -0.9259 -9.6852 0.0698 20 6 -0.0200 -8.2292 2.1588 21 6 0.5345 -3.2897 2.4445 22 6 0.2344 -2.3379 1.2799 23 1 -0.4851 0.8401 0.0004 24 1 1.0135 -4.0700 -0.8243 25 1 2.7054 -3.5077 -0.8043 26 1 3.0127 -4.2770 1.4808 27 1 2.2519 -5.6163 0.5857 28 1 1.8794 -7.1861 1.7762 29 1 -0.6777 -6.8517 0.0520 30 1 1.0349 -7.0102 -0.5210 31 1 0.4373 -8.7486 3.0010 32 1 -1.0657 -7.9807 2.3402 33 1 1.3249 -2.8691 3.0663 34 1 -0.3664 -3.4333 3.0411 35 1 0.0947 -1.3263 1.6610 36 1 -0.6680 -2.6649 0.7635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:08 Heat of formation + Delta-G solvation = -44.052594 kcal Electronic energy + Delta-G solvation = -21587.400921 eV Core-core repulsion = 18201.142599 eV Total energy + Delta-G solvation = -3386.258322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11921 -37.60245 -37.15323 -36.35931 -35.78472 -33.98288 -31.27204 -30.44123 -27.23852 -26.88775 -24.73794 -23.49106 -22.52752 -20.45884 -19.08866 -18.69441 -17.79380 -16.76638 -16.54196 -16.48298 -15.89339 -15.21674 -15.09628 -14.87434 -14.39944 -13.75939 -13.52755 -13.41953 -13.34917 -13.32684 -12.54363 -12.49460 -12.47113 -12.05994 -11.80855 -11.75279 -11.30401 -11.17874 -10.88040 -10.82447 -10.65709 -10.59514 -10.33498 -10.04078 -9.95215 -9.50015 -8.66876 -8.36839 -6.80027 -5.91942 -3.37853 -0.12751 1.68407 2.71717 3.20612 3.30677 3.37553 3.38023 3.40818 3.82265 3.96521 4.32629 4.39173 4.64763 4.75025 4.92828 5.12509 5.17205 5.25737 5.49843 5.62607 5.64873 5.68330 5.78505 6.03109 6.22352 6.27795 6.38950 6.58723 6.74471 7.15144 7.45312 7.65293 7.75077 8.28796 8.37379 9.04498 9.67128 10.23341 11.15546 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.003966 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.679401 B = 7058.376202 C = 7329.219598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.130 3.870 11 C 0.084 3.916 12 N -0.590 5.590 13 C 0.532 3.468 14 O -0.547 6.547 15 C -0.095 4.095 16 C -0.589 4.589 17 S 2.414 3.586 18 O -0.914 6.914 19 O -0.924 6.924 20 C -0.576 4.576 21 C 0.086 3.914 22 C 0.158 3.842 23 H 0.257 0.743 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.154 0.846 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -15.085 2.304 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.040 4.040 12 N -0.321 5.321 13 C 0.317 3.683 14 O -0.426 6.426 15 C -0.118 4.118 16 C -0.717 4.717 17 S 2.595 3.405 18 O -0.911 6.911 19 O -0.921 6.921 20 C -0.705 4.705 21 C -0.037 4.037 22 C 0.032 3.968 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.118 -15.970 2.153 16.254 hybrid contribution 0.473 2.081 0.440 2.179 sum 2.592 -13.890 2.593 14.366 Atomic orbital electron populations 1.70005 1.05361 1.25994 1.53041 1.25088 0.95282 0.98625 1.00336 0.86334 0.78918 0.83062 0.78204 1.20783 1.21548 1.20900 1.19143 0.92734 0.84628 1.42567 0.91467 1.43994 1.36519 1.01609 1.49165 1.21365 0.98529 0.87439 0.92371 1.22558 0.88429 1.00441 0.92602 1.48027 1.32339 1.06831 1.44944 1.19606 0.82934 0.84358 0.81388 1.90662 1.28826 1.86518 1.36555 1.21554 1.01637 0.95061 0.93549 1.30998 1.11478 1.26997 1.02268 1.08336 0.74870 0.77212 0.80115 1.93716 1.39454 1.73686 1.84245 1.93648 1.47385 1.74770 1.76248 1.30850 1.10265 1.07440 1.21966 1.22574 0.99950 0.82624 0.98593 1.21199 0.89046 0.98608 0.87957 0.93315 0.95750 0.91366 0.91291 0.90861 0.84959 0.83219 0.84733 0.85426 0.82789 0.91961 0.90030 0.88148 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 11.20 55.49 0.62 -24.48 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 3 Si 0.91 20.73 29.59 -169.99 -5.03 15.70 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.73 9.57 -15.06 -0.14 -6.87 16 8 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.75 2.96 -171.77 -0.51 -14.26 16 10 C 0.13 2.40 6.70 -3.37 -0.02 2.38 16 11 C 0.08 1.25 6.46 -3.36 -0.02 1.23 16 12 N -0.59 -9.88 2.95 -172.21 -0.51 -10.38 16 13 C 0.53 8.33 7.20 -10.98 -0.08 8.25 16 14 O -0.55 -10.29 15.35 5.56 0.09 -10.21 16 15 C -0.09 -0.99 2.46 -91.73 -0.23 -1.22 16 16 C -0.59 -5.07 7.05 37.18 0.26 -4.81 16 17 S 2.41 19.12 7.55 -107.50 -0.81 18.31 16 18 O -0.91 -9.45 18.18 -57.31 -1.04 -10.50 16 19 O -0.92 -10.49 18.18 -57.31 -1.04 -11.53 16 20 C -0.58 -4.96 7.18 37.18 0.27 -4.69 16 21 C 0.09 1.64 6.59 -3.60 -0.02 1.62 16 22 C 0.16 3.62 5.51 -3.60 -0.02 3.60 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.80 5.09 -51.93 -0.26 0.53 16 28 H 0.13 1.07 7.51 -51.93 -0.39 0.68 16 29 H 0.15 1.38 8.11 -51.93 -0.42 0.95 16 30 H 0.13 0.91 7.59 -51.93 -0.39 0.52 16 31 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.15 1.48 7.57 -51.93 -0.39 1.09 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.57 6.99 -51.93 -0.36 1.20 16 35 H 0.10 2.55 6.00 -51.93 -0.31 2.24 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -35.33 304.60 -8.35 -43.68 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.61 Total: -0.47 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.09 Total: -0.44 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.39 Total: -49.12 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -2.00 Total: -32.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Atomic # 16 Polarization: 19.12 SS G_CDS: -0.81 Total: 18.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.33 -8.35 -43.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.376 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds