Wall clock time and date at job start Tue Mar 31 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99726 * 2 1 4 4 C 1.53001 * 109.46989 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46836 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99662 * 180.02562 * 5 4 3 7 7 O 1.21581 * 120.00089 * 354.92306 * 6 5 4 8 8 N 1.34774 * 119.99633 * 175.19700 * 6 5 4 9 9 C 1.47081 * 120.87815 * 184.43638 * 8 6 5 10 10 C 1.53694 * 108.27814 * 128.75300 * 9 8 6 11 11 N 1.46897 * 109.25719 * 54.08280 * 10 9 8 12 12 C 1.46894 * 111.00511 * 172.60739 * 11 10 9 13 13 C 1.50702 * 109.47090 * 294.30409 * 12 11 10 14 14 H 1.07997 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00192 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99689 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00154 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46546 * 90.00232 * 17 15 13 19 19 H 1.48493 * 109.47124 * 210.00084 * 17 15 13 20 20 H 1.48498 * 109.47093 * 330.00329 * 17 15 13 21 21 C 1.46904 * 111.26796 * 296.75582 * 11 10 9 22 22 C 1.47078 * 120.88580 * 4.71390 * 8 6 5 23 23 H 1.09008 * 109.47122 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47252 * 299.99919 * 1 2 3 25 25 H 1.09000 * 109.47502 * 60.00334 * 1 2 3 26 26 H 1.09002 * 109.46980 * 59.99753 * 3 2 1 27 27 H 1.08999 * 109.47084 * 300.00122 * 3 2 1 28 28 H 1.08996 * 109.46823 * 60.00527 * 4 3 2 29 29 H 1.08997 * 109.46919 * 300.00145 * 4 3 2 30 30 H 0.96993 * 120.00327 * 0.02562 * 5 4 3 31 31 H 1.09002 * 109.63018 * 248.51866 * 9 8 6 32 32 H 1.09001 * 109.63196 * 9.10190 * 9 8 6 33 33 H 1.08993 * 109.65015 * 294.08090 * 10 9 8 34 34 H 1.09000 * 109.42046 * 173.94552 * 10 9 8 35 35 H 1.09002 * 109.47044 * 54.30158 * 12 11 10 36 36 H 1.08998 * 109.47782 * 174.29998 * 12 11 10 37 37 H 0.96999 * 119.99180 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.49477 * 303.14367 * 21 11 10 39 39 H 1.08997 * 109.49313 * 183.05854 * 21 11 10 40 40 H 1.09003 * 109.62597 * 350.89567 * 22 8 6 41 41 H 1.08993 * 109.63151 * 111.47962 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 7 4.0717 3.3675 0.0000 6 6 5.3606 3.7616 -0.0001 7 8 6.2486 2.9364 0.0935 8 7 5.6649 5.0708 -0.0984 9 6 7.0634 5.5154 -0.1979 10 6 7.1847 6.4583 -1.4055 11 7 6.1978 7.5387 -1.2777 12 6 6.3949 8.5577 -2.3172 13 6 7.7191 9.2445 -2.1027 14 1 8.3508 8.9534 -1.2765 15 6 8.1242 10.2444 -2.9613 16 7 7.3551 10.5986 -3.9677 17 14 9.7652 11.0962 -2.6950 18 1 10.8261 10.3698 -3.4379 19 1 9.6833 12.4941 -3.1892 20 1 10.0907 11.1017 -1.2461 21 6 4.8260 7.0138 -1.3085 22 6 4.6077 6.0934 -0.1029 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8030 2.2371 0.8900 27 1 1.8030 2.2371 -0.8900 28 1 4.1615 1.4704 -0.8891 29 1 4.1608 1.4705 0.8908 30 1 3.3624 4.0290 -0.0003 31 1 7.3453 6.0439 0.7128 32 1 7.7130 4.6516 -0.3394 33 1 6.9986 5.9026 -2.3245 34 1 8.1879 6.8836 -1.4339 35 1 6.3869 8.0824 -3.2981 36 1 5.5916 9.2924 -2.2630 37 1 7.6403 11.3018 -4.5719 38 1 4.6728 6.4504 -2.2289 39 1 4.1187 7.8420 -1.2665 40 1 3.6330 5.6119 -0.1817 41 1 4.6581 6.6763 0.8167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601548227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:15 Heat of formation + Delta-G solvation = -14.686031 kcal Electronic energy + Delta-G solvation = -20652.732640 eV Core-core repulsion = 17501.299505 eV Total energy + Delta-G solvation = -3151.433135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.25588 -37.74725 -35.48394 -34.42218 -32.43969 -31.24928 -30.30054 -29.35809 -28.04391 -25.51908 -23.79103 -22.90085 -22.12795 -20.78438 -19.40932 -18.00899 -16.69795 -16.39149 -16.13792 -16.05894 -15.12595 -14.91400 -14.64444 -14.45635 -14.21074 -13.94548 -13.87597 -13.76162 -13.53387 -13.03763 -12.90665 -12.26200 -12.20037 -12.07647 -11.95606 -11.31359 -11.16388 -10.84397 -10.76459 -10.64194 -10.52789 -10.48563 -10.02025 -9.87070 -9.29797 -9.22777 -8.50087 -8.35687 -8.12178 -7.34825 -6.07588 -4.09347 1.08607 2.09245 2.77911 3.26906 3.29872 3.36271 3.40375 3.91380 4.30991 4.38396 4.46487 4.67615 4.69609 4.75279 4.96328 5.17487 5.24583 5.26922 5.32723 5.39197 5.46996 5.56508 5.64928 5.81066 5.91183 6.01954 6.16421 6.31907 6.39756 6.54570 6.65464 7.00300 7.19813 7.26290 7.72825 7.94869 7.99415 8.10476 8.45867 8.63259 8.98018 9.55363 11.03252 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.040726 B = 0.002687 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.352198 B =10419.618803 C =10832.610272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.241 6.241 3 C -0.104 4.104 4 C 0.157 3.843 5 N -0.750 5.750 6 C 0.709 3.291 7 O -0.593 6.593 8 N -0.624 5.624 9 C 0.133 3.867 10 C 0.050 3.950 11 N -0.535 5.535 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.040 3.960 22 C 0.119 3.881 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.395 0.605 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.098 0.902 35 H -0.009 1.009 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 -16.059 8.166 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.017 6.017 3 C -0.253 4.253 4 C 0.031 3.969 5 N -0.410 5.410 6 C 0.410 3.590 7 O -0.472 6.472 8 N -0.361 5.361 9 C 0.010 3.990 10 C -0.079 4.079 11 N -0.260 5.260 12 C 0.069 3.931 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.089 4.089 22 C -0.005 4.005 23 H 0.122 0.878 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.232 0.768 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.043 0.957 34 H 0.116 0.884 35 H 0.009 0.991 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.897 -17.182 8.516 23.111 hybrid contribution -0.688 1.644 -0.863 1.980 sum -13.585 -15.538 7.654 22.013 Atomic orbital electron populations 1.23418 0.93881 1.06764 1.05111 1.87021 1.07412 1.09130 1.98090 1.23564 0.99980 0.96018 1.05717 1.20712 0.91129 0.81381 1.03660 1.45200 1.06524 1.07574 1.81680 1.15766 0.82684 0.82694 0.77840 1.90901 1.46480 1.51643 1.58130 1.47412 1.08612 1.03533 1.76584 1.21851 0.80092 0.97840 0.99186 1.22460 0.98968 0.91621 0.94833 1.62079 1.00090 1.12073 1.51777 1.19724 0.97866 0.88617 0.86883 1.21142 1.03131 1.18401 1.12106 0.91741 1.25000 0.97551 0.96954 0.95112 1.69961 1.37256 1.30599 1.15972 0.86483 0.83658 0.78687 0.78530 1.20694 1.21271 1.19710 1.22384 0.93788 0.97320 0.95449 1.21771 0.89064 0.89530 1.00153 0.87814 0.90341 0.90300 0.89300 0.89264 0.90747 0.90590 0.76830 0.91073 0.89306 0.95701 0.88432 0.99130 0.95078 0.92884 0.95538 0.90122 0.91379 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.76 101.05 1.09 0.48 16 2 S -0.24 -1.96 22.38 -107.50 -2.41 -4.37 16 3 C -0.10 -0.75 6.05 37.16 0.22 -0.52 16 4 C 0.16 1.60 5.69 -4.04 -0.02 1.58 16 5 N -0.75 -8.48 5.47 -65.23 -0.36 -8.84 16 6 C 0.71 11.02 8.31 -86.92 -0.72 10.30 16 7 O -0.59 -11.38 15.83 5.29 0.08 -11.29 16 8 N -0.62 -9.50 3.00 -177.91 -0.53 -10.03 16 9 C 0.13 2.20 6.61 -3.36 -0.02 2.18 16 10 C 0.05 0.96 5.47 -3.46 -0.02 0.95 16 11 N -0.53 -10.95 4.62 -235.47 -1.09 -12.03 16 12 C 0.19 4.88 4.72 -4.98 -0.02 4.85 16 13 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 14 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 22 C 0.12 1.53 6.59 -3.60 -0.02 1.51 16 23 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 26 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.40 3.43 5.97 -40.82 -0.24 3.19 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 35 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 36 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 40 H 0.07 0.64 5.64 -51.93 -0.29 0.35 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -32.44 343.58 -10.00 -42.43 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.66 Total: -1.03 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 0.07 Total: 9.22 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -1.24 Total: -56.41 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.41 Total: -4.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.44 -10.00 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601548227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.747 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds