Wall clock time and date at job start Tue Mar 31 2020 02:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99726 * 2 1 4 4 C 1.53001 * 109.46989 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46836 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99662 * 180.02562 * 5 4 3 7 7 O 1.21581 * 120.00089 * 354.92306 * 6 5 4 8 8 N 1.34774 * 119.99633 * 175.19700 * 6 5 4 9 9 C 1.47081 * 120.87815 * 184.43638 * 8 6 5 10 10 C 1.53694 * 108.27814 * 128.75300 * 9 8 6 11 11 N 1.46897 * 109.25719 * 54.08280 * 10 9 8 12 12 C 1.46894 * 111.00511 * 172.60739 * 11 10 9 13 13 C 1.50702 * 109.47090 * 294.30409 * 12 11 10 14 14 H 1.07997 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00192 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99689 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00154 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46546 * 90.00232 * 17 15 13 19 19 H 1.48493 * 109.47124 * 210.00084 * 17 15 13 20 20 H 1.48498 * 109.47093 * 330.00329 * 17 15 13 21 21 C 1.46904 * 111.26796 * 296.75582 * 11 10 9 22 22 C 1.47078 * 120.88580 * 4.71390 * 8 6 5 23 23 H 1.09008 * 109.47122 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47252 * 299.99919 * 1 2 3 25 25 H 1.09000 * 109.47502 * 60.00334 * 1 2 3 26 26 H 1.09002 * 109.46980 * 59.99753 * 3 2 1 27 27 H 1.08999 * 109.47084 * 300.00122 * 3 2 1 28 28 H 1.08996 * 109.46823 * 60.00527 * 4 3 2 29 29 H 1.08997 * 109.46919 * 300.00145 * 4 3 2 30 30 H 0.96993 * 120.00327 * 0.02562 * 5 4 3 31 31 H 1.09002 * 109.63018 * 248.51866 * 9 8 6 32 32 H 1.09001 * 109.63196 * 9.10190 * 9 8 6 33 33 H 1.08993 * 109.65015 * 294.08090 * 10 9 8 34 34 H 1.09000 * 109.42046 * 173.94552 * 10 9 8 35 35 H 1.09002 * 109.47044 * 54.30158 * 12 11 10 36 36 H 1.08998 * 109.47782 * 174.29998 * 12 11 10 37 37 H 0.96999 * 119.99180 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.49477 * 303.14367 * 21 11 10 39 39 H 1.08997 * 109.49313 * 183.05854 * 21 11 10 40 40 H 1.09003 * 109.62597 * 350.89567 * 22 8 6 41 41 H 1.08993 * 109.63151 * 111.47962 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 7 4.0717 3.3675 0.0000 6 6 5.3606 3.7616 -0.0001 7 8 6.2486 2.9364 0.0935 8 7 5.6649 5.0708 -0.0984 9 6 7.0634 5.5154 -0.1979 10 6 7.1847 6.4583 -1.4055 11 7 6.1978 7.5387 -1.2777 12 6 6.3949 8.5577 -2.3172 13 6 7.7191 9.2445 -2.1027 14 1 8.3508 8.9534 -1.2765 15 6 8.1242 10.2444 -2.9613 16 7 7.3551 10.5986 -3.9677 17 14 9.7652 11.0962 -2.6950 18 1 10.8261 10.3698 -3.4379 19 1 9.6833 12.4941 -3.1892 20 1 10.0907 11.1017 -1.2461 21 6 4.8260 7.0138 -1.3085 22 6 4.6077 6.0934 -0.1029 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8030 2.2371 0.8900 27 1 1.8030 2.2371 -0.8900 28 1 4.1615 1.4704 -0.8891 29 1 4.1608 1.4705 0.8908 30 1 3.3624 4.0290 -0.0003 31 1 7.3453 6.0439 0.7128 32 1 7.7130 4.6516 -0.3394 33 1 6.9986 5.9026 -2.3245 34 1 8.1879 6.8836 -1.4339 35 1 6.3869 8.0824 -3.2981 36 1 5.5916 9.2924 -2.2630 37 1 7.6403 11.3018 -4.5719 38 1 4.6728 6.4504 -2.2289 39 1 4.1187 7.8420 -1.2665 40 1 3.6330 5.6119 -0.1817 41 1 4.6581 6.6763 0.8167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601548227.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:12 Heat of formation + Delta-G solvation = -37.585181 kcal Electronic energy + Delta-G solvation = -20653.725621 eV Core-core repulsion = 17501.299505 eV Total energy + Delta-G solvation = -3152.426117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.48500 -39.17969 -36.52647 -35.99982 -34.39526 -32.41004 -31.41228 -29.89111 -29.60320 -27.20389 -24.95488 -24.13132 -23.72186 -22.21298 -20.65498 -19.22114 -18.49455 -17.61799 -17.02451 -16.97633 -16.75709 -16.10440 -15.96033 -15.81876 -15.39506 -15.36669 -15.06058 -14.53341 -14.52061 -14.16638 -14.02526 -13.69933 -13.40807 -13.10056 -12.89892 -12.81890 -12.72592 -12.57790 -12.37065 -12.31132 -12.16377 -11.75636 -11.41106 -11.20018 -10.98879 -10.61870 -10.34420 -9.63105 -9.04478 -8.72927 -8.20778 -6.30297 0.50977 1.43007 1.43327 1.55082 1.57458 1.70865 2.04962 2.40881 2.89145 3.11777 3.23060 3.62448 3.86952 3.94326 4.05129 4.14798 4.25647 4.34908 4.36505 4.38384 4.43912 4.55689 4.68727 4.71768 4.78501 4.85766 4.91955 4.95078 5.02189 5.17078 5.22769 5.34342 5.42824 5.64148 5.87679 6.03718 6.25406 6.58542 6.85312 6.87831 7.39498 7.45484 8.90275 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.040726 B = 0.002687 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.352198 B =10419.618803 C =10832.610272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.300 6.300 3 C -0.085 4.085 4 C 0.159 3.841 5 N -0.731 5.731 6 C 0.705 3.295 7 O -0.633 6.633 8 N -0.627 5.627 9 C 0.145 3.855 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.037 3.963 22 C 0.126 3.874 23 H 0.111 0.889 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.411 0.589 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.009 0.991 34 H 0.080 0.920 35 H -0.042 1.042 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.019 0.981 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.683 -16.157 9.546 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.076 6.076 3 C -0.233 4.233 4 C 0.034 3.966 5 N -0.391 5.391 6 C 0.407 3.593 7 O -0.515 6.515 8 N -0.364 5.364 9 C 0.021 3.979 10 C -0.072 4.072 11 N -0.263 5.263 12 C 0.083 3.917 13 C -0.561 4.561 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.092 4.092 22 C 0.004 3.996 23 H 0.130 0.870 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.250 0.750 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.028 0.972 34 H 0.098 0.902 35 H -0.025 1.025 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.351 -17.287 9.914 24.558 hybrid contribution -0.339 1.614 -1.311 2.107 sum -14.690 -15.673 8.603 23.140 Atomic orbital electron populations 1.23465 0.90310 1.07684 1.06217 1.87272 1.11395 1.10697 1.98263 1.23416 0.97408 0.95168 1.07355 1.20697 0.93384 0.80299 1.02262 1.45022 1.05392 1.08503 1.80179 1.15931 0.83536 0.82245 0.77621 1.90876 1.48066 1.52666 1.59892 1.47415 1.08465 1.04045 1.76485 1.21598 0.81354 0.96925 0.97975 1.22370 0.97841 0.91420 0.95618 1.61998 1.02663 1.12192 1.49474 1.19370 0.96540 0.89175 0.86633 1.21475 1.03991 1.18580 1.12072 0.91634 1.25898 1.01266 0.97727 0.94763 1.70082 1.39210 1.31288 1.16913 0.85400 0.79053 0.77446 0.78839 1.20113 1.20852 1.18728 1.22542 0.91426 0.98316 0.96962 1.21882 0.90276 0.88727 0.98741 0.87028 0.89068 0.89298 0.87351 0.87820 0.92471 0.91849 0.74958 0.90149 0.89720 0.97248 0.90163 1.02456 0.96992 0.92725 0.96298 0.89092 0.87041 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.76 113.37 1.22 0.43 16 2 S -0.30 -4.49 22.38 -56.49 -1.26 -5.75 16 3 C -0.09 -1.01 6.05 71.98 0.44 -0.57 16 4 C 0.16 3.03 5.69 86.38 0.49 3.52 16 5 N -0.73 -14.77 5.47 -478.54 -2.62 -17.38 16 6 C 0.71 20.89 8.31 179.05 1.49 22.38 16 7 O -0.63 -24.12 15.83 -3.97 -0.06 -24.18 16 8 N -0.63 -18.00 3.00 -835.04 -2.51 -20.51 16 9 C 0.15 4.72 6.61 86.50 0.57 5.29 16 10 C 0.06 2.21 5.47 86.54 0.47 2.68 16 11 N -0.54 -22.07 4.62 -898.90 -4.15 -26.23 16 12 C 0.21 10.80 4.72 85.56 0.40 11.21 16 13 C -0.52 -28.93 8.41 25.60 0.22 -28.72 16 14 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 15 C 0.00 0.08 5.46 84.65 0.46 0.55 16 16 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 17 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 21 C 0.04 1.15 5.62 86.38 0.49 1.64 16 22 C 0.13 2.90 6.59 86.35 0.57 3.47 16 23 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.41 5.52 5.97 -92.71 -0.55 4.97 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.08 2.85 7.09 -2.39 -0.02 2.83 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 3.36 6.67 -2.39 -0.02 3.35 16 35 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 36 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 40 H 0.11 1.60 5.64 -2.39 -0.01 1.58 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -72.10 343.58 -1.02 -73.12 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.46 Total: 8.52 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.82 Total: 21.85 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -8.99 Total: -119.34 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.06 Total: -24.18 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -1.26 Total: -5.75 kcal Total: -72.10 -1.02 -73.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601548227.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.538 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds