Wall clock time and date at job start Tue Mar 31 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99766 * 2 1 4 4 S 1.65595 * 120.00118 * 180.02562 * 2 1 3 5 5 O 1.42105 * 106.40199 * 336.45815 * 4 2 1 6 6 O 1.42098 * 106.40117 * 203.54125 * 4 2 1 7 7 C 1.76189 * 107.22130 * 89.99945 * 4 2 1 8 8 C 1.35164 * 125.61161 * 89.99785 * 7 4 2 9 9 C 1.40334 * 107.12716 * 179.97438 * 8 7 4 10 10 C 1.36656 * 106.70413 * 0.02562 * 9 8 7 11 11 C 1.46516 * 125.99718 * 180.02562 * 10 9 8 12 12 O 1.21749 * 119.99592 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00269 * 179.97438 * 11 10 9 14 14 C 1.36855 * 119.99830 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00101 * 359.72751 * 14 13 11 16 16 C 1.39023 * 119.99689 * 179.97438 * 14 13 11 17 17 N 1.31384 * 120.00433 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99960 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47055 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47125 * 120.00479 * 18 16 14 21 21 H 1.48500 * 109.47415 * 240.00272 * 18 16 14 22 22 O 1.33972 * 125.61232 * 270.31148 * 7 4 2 23 23 H 1.09001 * 109.47397 * 269.99437 * 1 2 3 24 24 H 1.08999 * 109.47613 * 30.00349 * 1 2 3 25 25 H 1.09010 * 109.47148 * 150.00075 * 1 2 3 26 26 H 1.08994 * 109.47533 * 240.00100 * 3 2 1 27 27 H 1.09001 * 109.47273 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.47181 * 119.99438 * 3 2 1 29 29 H 1.08004 * 126.43455 * 359.96512 * 8 7 4 30 30 H 1.08004 * 126.64534 * 179.97438 * 9 8 7 31 31 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 32 32 H 0.97005 * 120.00355 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4067 0.5434 6 8 3.5759 -1.1569 0.5439 7 6 2.5538 -1.8851 -1.6837 8 6 3.6219 -1.5371 -2.4354 9 6 3.4339 -2.1007 -3.7067 10 6 2.2447 -2.7727 -3.6665 11 6 1.6393 -3.5187 -4.7727 12 8 2.2053 -3.5775 -5.8490 13 7 0.4559 -4.1399 -4.5987 14 6 -0.1097 -4.8363 -5.6322 15 1 0.3900 -4.8844 -6.5883 16 6 -1.3301 -5.4775 -5.4525 17 7 -1.9406 -5.4146 -4.2909 18 14 -2.1026 -6.4275 -6.8633 19 1 -1.2221 -6.3451 -8.0563 20 1 -2.2701 -7.8495 -6.4695 21 1 -3.4294 -5.8435 -7.1855 22 8 1.7233 -2.6245 -2.4310 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3634 -0.8901 -0.5139 26 1 2.8241 1.3266 -0.8899 27 1 1.4891 2.0972 0.0005 28 1 2.8240 1.3265 0.8901 29 1 4.4622 -0.9376 -2.1173 30 1 4.0997 -2.0186 -4.5531 31 1 0.0052 -4.0934 -3.7411 32 1 -2.7924 -5.8617 -4.1657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701239043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:27 Heat of formation + Delta-G solvation = -85.387538 kcal Electronic energy + Delta-G solvation = -20759.807002 eV Core-core repulsion = 17235.923168 eV Total energy + Delta-G solvation = -3523.883834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.28503 -38.14148 -37.36945 -36.34778 -35.93690 -34.42445 -32.88477 -31.61475 -29.78756 -28.29718 -25.68793 -24.88531 -22.99932 -21.72444 -19.78638 -19.26898 -18.52219 -18.08172 -17.53992 -16.71977 -16.19732 -15.95042 -15.05962 -14.77565 -14.57028 -14.17796 -13.66127 -13.48919 -13.43650 -13.32807 -12.83823 -12.74150 -12.67834 -12.42108 -12.18642 -11.88033 -11.84647 -11.71201 -11.45842 -11.32947 -10.61531 -10.49264 -9.93711 -9.88875 -9.38108 -8.98068 -8.71518 -8.35877 -6.81772 -4.12757 0.16392 1.07306 2.31516 2.77643 3.03509 3.09613 3.15984 3.21023 3.61830 3.89890 3.97386 4.36520 4.54737 4.63488 5.00132 5.01609 5.15385 5.18492 5.39554 5.51476 5.54478 5.63934 5.66851 5.72197 5.90770 6.14338 6.25939 6.51656 6.97383 7.18154 7.67947 8.20182 8.76477 9.09825 9.63606 10.32727 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.004465 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.404009 B = 6269.434148 C = 6903.592060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.002 6.002 3 C 0.088 3.912 4 S 2.727 3.273 5 O -0.937 6.937 6 O -0.941 6.941 7 C -0.604 4.604 8 C -0.085 4.085 9 C -0.196 4.196 10 C 0.042 3.958 11 C 0.474 3.526 12 O -0.578 6.578 13 N -0.514 5.514 14 C -0.295 4.295 15 H 0.116 0.884 16 C 0.028 3.972 17 N -0.867 5.867 18 Si 0.942 3.058 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.276 1.276 22 O -0.115 6.115 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.401 0.599 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 12.034 8.865 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.842 5.842 3 C -0.057 4.057 4 S 2.811 3.189 5 O -0.927 6.927 6 O -0.931 6.931 7 C -0.736 4.736 8 C -0.106 4.106 9 C -0.218 4.218 10 C -0.016 4.016 11 C 0.262 3.738 12 O -0.466 6.466 13 N -0.146 5.146 14 C -0.424 4.424 15 H 0.134 0.866 16 C -0.179 4.179 17 N -0.504 5.504 18 Si 0.767 3.233 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.201 1.201 22 O -0.008 6.008 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.236 0.764 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.713 11.320 9.032 14.950 hybrid contribution -0.460 -0.161 -0.969 1.085 sum 3.253 11.159 8.063 14.146 Atomic orbital electron populations 1.21636 0.77338 1.03988 1.02602 1.57414 1.15819 1.21577 1.89402 1.21604 0.96830 0.85035 1.02255 1.01426 0.73189 0.72377 0.71866 1.93610 1.65662 1.58051 1.75424 1.93609 1.40478 1.84808 1.74197 1.35626 1.01826 1.14729 1.21402 1.21765 0.97323 0.98495 0.93012 1.21902 0.98318 1.02812 0.98754 1.23735 0.94998 0.98976 0.83920 1.16076 0.84589 0.87337 0.85818 1.90726 1.64024 1.67448 1.24394 1.42058 1.16631 1.41051 1.14877 1.20056 1.02628 1.25882 0.93881 0.86620 1.25589 0.96390 0.97488 0.98400 1.69634 1.16845 1.40841 1.23111 0.85603 0.78872 0.78746 0.80064 1.18628 1.20109 1.20142 1.84244 1.41688 1.54576 1.20341 0.91868 0.90668 0.90201 0.92065 0.89869 0.91209 0.81888 0.81895 0.76393 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.26 59.85 0.61 1.47 16 2 N -1.00 -10.87 3.58 -129.20 -0.46 -11.33 16 3 C 0.09 0.69 10.30 59.85 0.62 1.30 16 4 S 2.73 39.24 5.80 -107.50 -0.62 38.62 16 5 O -0.94 -16.41 17.09 -57.25 -0.98 -17.39 16 6 O -0.94 -14.16 16.99 -57.17 -0.97 -15.13 16 7 C -0.60 -10.17 7.35 29.64 0.22 -9.96 16 8 C -0.08 -1.32 10.58 -39.89 -0.42 -1.75 16 9 C -0.20 -3.60 10.62 -39.37 -0.42 -4.02 16 10 C 0.04 0.91 7.13 -36.82 -0.26 0.65 16 11 C 0.47 11.90 7.73 -12.93 -0.10 11.80 16 12 O -0.58 -15.89 16.44 5.15 0.08 -15.81 16 13 N -0.51 -13.28 5.27 -12.22 -0.06 -13.34 16 14 C -0.29 -7.87 9.68 -15.02 -0.15 -8.02 16 15 H 0.12 3.17 7.15 -52.49 -0.38 2.79 16 16 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 17 N -0.87 -22.37 13.05 55.50 0.72 -21.65 16 18 Si 0.94 19.48 29.55 -169.99 -5.02 14.45 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 O -0.12 -2.33 10.40 4.86 0.05 -2.28 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 25 H 0.08 0.88 7.79 -51.92 -0.40 0.47 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.45 7.79 -51.93 -0.40 0.05 16 28 H 0.07 0.51 8.01 -51.93 -0.42 0.09 16 29 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.16 2.75 8.06 -52.48 -0.42 2.32 16 31 H 0.40 10.13 7.65 -40.82 -0.31 9.81 16 32 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -33.06 305.67 -5.80 -38.87 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.15 Total: 8.29 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 0.00 Total: -7.90 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.20 Total: -46.32 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.81 Total: -50.61 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 39.24 SS G_CDS: -0.62 Total: 38.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.06 -5.80 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701239043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.518 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds