Wall clock time and date at job start Tue Mar 31 2020 04:03:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31416 * 1
3 3 Si 1.86803 * 119.99890 * 2 1
4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.46809 * 299.99695 * 3 2 1
6 6 H 1.48491 * 109.47312 * 59.99823 * 3 2 1
7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1
9 9 N 1.37091 * 120.00625 * 0.02562 * 7 2 1
10 10 C 1.34769 * 120.00553 * 180.02562 * 9 7 2
11 11 O 1.21297 * 119.99911 * 359.97438 * 10 9 7
12 12 C 1.50702 * 120.00466 * 179.97438 * 10 9 7
13 13 S 1.81399 * 109.47410 * 179.97438 * 12 10 9
14 14 C 1.81405 * 102.99706 * 180.02562 * 13 12 10
15 15 C 1.50705 * 109.46754 * 180.02562 * 14 13 12
16 16 O 1.21289 * 120.00023 * 359.97438 * 15 14 13
17 17 N 1.34772 * 119.99986 * 180.02562 * 15 14 13
18 18 C 1.47149 * 120.98264 * 359.71254 * 17 15 14
19 19 C 1.53713 * 108.16447 * 129.43471 * 18 17 15
20 20 O 1.42962 * 109.14595 * 52.53601 * 19 18 17
21 21 C 1.42958 * 114.17036 * 297.29416 * 20 19 18
22 22 C 1.47149 * 120.98402 * 179.97438 * 17 15 14
23 23 H 0.96992 * 119.99915 * 0.02562 * 1 2 3
24 24 H 0.97010 * 119.99598 * 359.97438 * 9 7 2
25 25 H 1.09004 * 109.46923 * 59.99646 * 12 10 9
26 26 H 1.09004 * 109.46818 * 300.00196 * 12 10 9
27 27 H 1.09000 * 109.47133 * 299.99843 * 14 13 12
28 28 H 1.08998 * 109.47280 * 60.00592 * 14 13 12
29 29 H 1.09001 * 109.68716 * 249.21697 * 18 17 15
30 30 H 1.09003 * 109.68156 * 9.77040 * 18 17 15
31 31 H 1.09005 * 109.65528 * 292.57650 * 19 18 17
32 32 H 1.08992 * 109.48618 * 172.40105 * 19 18 17
33 33 H 1.08998 * 109.51515 * 302.65473 * 21 20 19
34 34 H 1.09000 * 109.55791 * 182.52933 * 21 20 19
35 35 H 1.08998 * 109.67981 * 350.23397 * 22 17 15
36 36 H 1.09004 * 109.68548 * 110.78507 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 3.7081 1.3464 0.0006
5 1 1.8894 2.3964 -1.2126
6 1 1.8894 2.3965 1.2124
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2034 0.0010
9 7 1.3235 -2.3907 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2103 -3.5578 0.0021
12 6 1.2439 -4.8630 0.0022
13 16 2.4227 -6.2417 0.0028
14 6 1.3443 -7.7005 0.0026
15 6 2.1883 -8.9490 0.0038
16 8 3.3982 -8.8632 0.0041
17 7 1.5988 -10.1609 0.0033
18 6 0.1330 -10.2902 0.0081
19 6 -0.2667 -11.2542 -1.1205
20 8 0.4776 -12.4674 -0.9865
21 6 1.8917 -12.3042 -1.1186
22 6 2.4018 -11.3940 0.0038
23 1 -0.4849 0.8400 -0.0004
24 1 0.3534 -2.3907 0.0005
25 1 0.6175 -4.9213 -0.8880
26 1 0.6169 -4.9201 0.8920
27 1 0.7149 -7.6871 0.8924
28 1 0.7155 -7.6874 -0.8876
29 1 -0.1975 -10.6872 0.9680
30 1 -0.3222 -9.3146 -0.1625
31 1 -0.0489 -10.7983 -2.0864
32 1 -1.3326 -11.4716 -1.0526
33 1 2.1173 -11.8522 -2.0844
34 1 2.3793 -13.2766 -1.0490
35 1 3.4498 -11.1496 -0.1695
36 1 2.2964 -11.9005 0.9633
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701266333.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:03:39
Heat of formation + Delta-G solvation = -104.094113 kcal
Electronic energy + Delta-G solvation = -19923.378739 eV
Core-core repulsion = 16534.516822 eV
Total energy + Delta-G solvation = -3388.861917 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 288.098 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.56702 -38.55333 -38.12168 -35.10573 -34.02978 -32.21298 -31.39466 -30.26040
-29.17228 -27.77570 -24.68213 -24.49724 -22.60529 -19.91599 -19.38064 -18.04404
-17.65129 -16.94594 -16.38728 -16.21122 -15.92711 -15.65940 -15.38400 -15.25576
-14.61328 -14.52557 -14.02285 -13.96126 -13.90087 -13.04727 -12.72908 -12.65139
-12.29963 -12.26045 -11.93772 -11.85214 -11.50239 -11.17795 -11.10787 -10.63213
-10.36958 -10.27391 -10.08230 -9.59399 -9.56629 -8.96494 -8.56956 -8.05679
-7.28282 -6.48414 -3.89418 1.55473 2.36011 2.58625 2.81342 3.13198
3.24923 3.32983 3.33838 3.78006 4.13602 4.14547 4.24567 4.50795
4.58855 4.68810 4.77763 4.86305 4.88137 4.98278 5.07475 5.14104
5.15240 5.25461 5.33373 5.47481 5.61362 5.63055 5.99395 6.17578
6.60055 6.92168 7.50327 7.86432 7.96525 8.50588 9.09769 9.43197
9.93614 10.69207
Molecular weight = 288.10amu
Principal moments of inertia in cm(-1)
A = 0.048952 B = 0.002657 C = 0.002550
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 571.848312 B =10534.347287 C =10977.853768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.023 3.977
3 Si 0.932 3.068
4 H -0.267 1.267
5 H -0.281 1.281
6 H -0.281 1.281
7 C -0.300 4.300
8 H 0.106 0.894
9 N -0.555 5.555
10 C 0.455 3.545
11 O -0.574 6.574
12 C -0.130 4.130
13 S -0.102 6.102
14 C -0.156 4.156
15 C 0.538 3.462
16 O -0.509 6.509
17 N -0.620 5.620
18 C 0.071 3.929
19 C 0.046 3.954
20 O -0.380 6.380
21 C 0.048 3.952
22 C 0.078 3.922
23 H 0.272 0.728
24 H 0.393 0.607
25 H 0.094 0.906
26 H 0.094 0.906
27 H 0.107 0.893
28 H 0.106 0.894
29 H 0.081 0.919
30 H 0.097 0.903
31 H 0.058 0.942
32 H 0.108 0.892
33 H 0.058 0.942
34 H 0.108 0.892
35 H 0.104 0.896
36 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.011 -22.704 -1.173 23.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.178 4.178
3 Si 0.758 3.242
4 H -0.191 1.191
5 H -0.207 1.207
6 H -0.207 1.207
7 C -0.429 4.429
8 H 0.124 0.876
9 N -0.191 5.191
10 C 0.239 3.761
11 O -0.458 6.458
12 C -0.281 4.281
13 S 0.122 5.878
14 C -0.307 4.307
15 C 0.325 3.675
16 O -0.383 6.383
17 N -0.357 5.357
18 C -0.052 4.052
19 C -0.031 4.031
20 O -0.298 6.298
21 C -0.030 4.030
22 C -0.045 4.045
23 H 0.082 0.918
24 H 0.227 0.773
25 H 0.112 0.888
26 H 0.113 0.887
27 H 0.125 0.875
28 H 0.125 0.875
29 H 0.099 0.901
30 H 0.115 0.885
31 H 0.077 0.923
32 H 0.126 0.874
33 H 0.076 0.924
34 H 0.126 0.874
35 H 0.122 0.878
36 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -3.638 -22.603 -1.138 22.922
hybrid contribution -1.860 1.084 0.001 2.153
sum -5.498 -21.519 -1.137 22.239
Atomic orbital electron populations
1.69617 1.05991 1.28246 1.50282 1.25292 0.95672 0.99829 0.97048
0.85763 0.79797 0.80847 0.77759 1.19078 1.20657 1.20660 1.19800
0.93523 0.81940 1.47649 0.87633 1.41770 1.09224 1.04260 1.63861
1.18933 0.87978 0.83751 0.85417 1.90584 1.13318 1.86442 1.55485
1.23582 1.01719 0.97415 1.05433 1.88246 1.08247 0.93371 1.97895
1.23641 1.03232 0.97356 1.06506 1.19786 0.88302 0.83508 0.75875
1.90769 1.13936 1.85842 1.47780 1.48062 1.06878 1.05543 1.75214
1.22574 0.80329 1.01735 1.00591 1.23076 0.97067 0.85636 0.97341
1.87968 1.17892 1.30666 1.93311 1.23007 0.81661 1.00666 0.97639
1.22289 0.97696 0.84625 0.99842 0.91799 0.77318 0.88756 0.88732
0.87469 0.87548 0.90088 0.88503 0.92319 0.87414 0.92417 0.87440
0.87791 0.90547
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16
2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16
3 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16
4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16
8 H 0.11 3.10 7.16 -52.48 -0.38 2.73 16
9 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16
10 C 0.46 10.94 7.80 -10.99 -0.09 10.85 16
11 O -0.57 -16.17 15.44 5.54 0.09 -16.08 16
12 C -0.13 -2.28 6.42 36.01 0.23 -2.05 16
13 S -0.10 -1.85 20.01 -107.50 -2.15 -4.00 16
14 C -0.16 -1.84 4.80 36.01 0.17 -1.67 16
15 C 0.54 7.06 7.73 -10.99 -0.08 6.97 16
16 O -0.51 -8.89 15.33 5.55 0.09 -8.80 16
17 N -0.62 -5.99 3.01 -172.04 -0.52 -6.51 16
18 C 0.07 0.45 6.57 -3.32 -0.02 0.43 16
19 C 0.05 0.28 7.00 37.53 0.26 0.54 16
20 O -0.38 -3.08 10.74 -35.23 -0.38 -3.45 16
21 C 0.05 0.34 6.98 37.29 0.26 0.60 16
22 C 0.08 0.67 6.63 -3.56 -0.02 0.64 16
23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16
24 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16
25 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16
26 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16
27 H 0.11 1.00 8.01 -51.92 -0.42 0.59 16
28 H 0.11 0.98 7.67 -51.92 -0.40 0.58 16
29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
30 H 0.10 0.46 6.05 -51.93 -0.31 0.15 16
31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
34 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.10 1.01 7.08 -51.93 -0.37 0.65 16
36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 320.18 15.07 4.83 4.83
Total: -1.00 -35.37 320.18 -6.65 -42.02
By element:
Atomic # 1 Polarization: 9.96 SS G_CDS: -4.71 Total: 5.25 kcal
Atomic # 6 Polarization: 7.88 SS G_CDS: 0.47 Total: 8.35 kcal
Atomic # 7 Polarization: -44.18 SS G_CDS: 0.15 Total: -44.03 kcal
Atomic # 8 Polarization: -28.13 SS G_CDS: -0.21 Total: -28.34 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Atomic # 16 Polarization: -1.85 SS G_CDS: -2.15 Total: -4.00 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -35.37 -6.65 -42.02 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701266333.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.072 kcal
(2) G-P(sol) polarization free energy of solvation -35.372 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.094 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds