Wall clock time and date at job start Tue Mar 31 2020 04:03:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31416 * 1
3 3 Si 1.86803 * 119.99890 * 2 1
4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.46809 * 299.99695 * 3 2 1
6 6 H 1.48491 * 109.47312 * 59.99823 * 3 2 1
7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99856 * 180.02562 * 7 2 1
9 9 N 1.37091 * 120.00625 * 0.02562 * 7 2 1
10 10 C 1.34769 * 120.00553 * 180.02562 * 9 7 2
11 11 O 1.21297 * 119.99911 * 359.97438 * 10 9 7
12 12 C 1.50702 * 120.00466 * 179.97438 * 10 9 7
13 13 S 1.81399 * 109.47410 * 179.97438 * 12 10 9
14 14 C 1.81405 * 102.99706 * 180.02562 * 13 12 10
15 15 C 1.50705 * 109.46754 * 180.02562 * 14 13 12
16 16 O 1.21289 * 120.00023 * 359.97438 * 15 14 13
17 17 N 1.34772 * 119.99986 * 180.02562 * 15 14 13
18 18 C 1.47149 * 120.98264 * 359.71254 * 17 15 14
19 19 C 1.53713 * 108.16447 * 129.43471 * 18 17 15
20 20 O 1.42962 * 109.14595 * 52.53601 * 19 18 17
21 21 C 1.42958 * 114.17036 * 297.29416 * 20 19 18
22 22 C 1.47149 * 120.98402 * 179.97438 * 17 15 14
23 23 H 0.96992 * 119.99915 * 0.02562 * 1 2 3
24 24 H 0.97010 * 119.99598 * 359.97438 * 9 7 2
25 25 H 1.09004 * 109.46923 * 59.99646 * 12 10 9
26 26 H 1.09004 * 109.46818 * 300.00196 * 12 10 9
27 27 H 1.09000 * 109.47133 * 299.99843 * 14 13 12
28 28 H 1.08998 * 109.47280 * 60.00592 * 14 13 12
29 29 H 1.09001 * 109.68716 * 249.21697 * 18 17 15
30 30 H 1.09003 * 109.68156 * 9.77040 * 18 17 15
31 31 H 1.09005 * 109.65528 * 292.57650 * 19 18 17
32 32 H 1.08992 * 109.48618 * 172.40105 * 19 18 17
33 33 H 1.08998 * 109.51515 * 302.65473 * 21 20 19
34 34 H 1.09000 * 109.55791 * 182.52933 * 21 20 19
35 35 H 1.08998 * 109.67981 * 350.23397 * 22 17 15
36 36 H 1.09004 * 109.68548 * 110.78507 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 3.7081 1.3464 0.0006
5 1 1.8894 2.3964 -1.2126
6 1 1.8894 2.3965 1.2124
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2034 0.0010
9 7 1.3235 -2.3907 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2103 -3.5578 0.0021
12 6 1.2439 -4.8630 0.0022
13 16 2.4227 -6.2417 0.0028
14 6 1.3443 -7.7005 0.0026
15 6 2.1883 -8.9490 0.0038
16 8 3.3982 -8.8632 0.0041
17 7 1.5988 -10.1609 0.0033
18 6 0.1330 -10.2902 0.0081
19 6 -0.2667 -11.2542 -1.1205
20 8 0.4776 -12.4674 -0.9865
21 6 1.8917 -12.3042 -1.1186
22 6 2.4018 -11.3940 0.0038
23 1 -0.4849 0.8400 -0.0004
24 1 0.3534 -2.3907 0.0005
25 1 0.6175 -4.9213 -0.8880
26 1 0.6169 -4.9201 0.8920
27 1 0.7149 -7.6871 0.8924
28 1 0.7155 -7.6874 -0.8876
29 1 -0.1975 -10.6872 0.9680
30 1 -0.3222 -9.3146 -0.1625
31 1 -0.0489 -10.7983 -2.0864
32 1 -1.3326 -11.4716 -1.0526
33 1 2.1173 -11.8522 -2.0844
34 1 2.3793 -13.2766 -1.0490
35 1 3.4498 -11.1496 -0.1695
36 1 2.2964 -11.9005 0.9633
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701266333.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:03:36
Heat of formation + Delta-G solvation = -131.281935 kcal
Electronic energy + Delta-G solvation = -19924.557692 eV
Core-core repulsion = 16534.516822 eV
Total energy + Delta-G solvation = -3390.040870 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 288.098 amu
Computer time = 3.96 seconds
Orbital eigenvalues (eV)
-41.35703 -40.08125 -39.31297 -36.06124 -35.89671 -33.40996 -32.83621 -31.22713
-30.64439 -28.47075 -26.65507 -25.08366 -23.30027 -21.51927 -20.44052 -19.99708
-18.54476 -17.99708 -17.64005 -17.18891 -17.01884 -16.56885 -16.44669 -16.22031
-16.02396 -15.97589 -15.68416 -14.90084 -14.77579 -14.46848 -13.91553 -13.87242
-13.52467 -13.36465 -13.23357 -12.90339 -12.84774 -12.44625 -12.35618 -12.11882
-11.79134 -11.57289 -11.28132 -11.05207 -10.78639 -10.53994 -10.08060 -9.70029
-8.65877 -8.51537 -6.00473 0.34128 1.34577 1.40657 1.41740 1.55187
1.57421 1.81439 1.94459 2.28629 2.85894 3.11046 3.15032 3.33862
3.72242 3.95236 4.01721 4.09316 4.16808 4.20745 4.22604 4.22808
4.27908 4.44676 4.48677 4.64385 4.74440 4.83940 4.92480 5.30246
5.38348 5.92320 6.09066 6.12277 6.51608 6.94615 7.06242 7.45466
8.01559 8.65876
Molecular weight = 288.10amu
Principal moments of inertia in cm(-1)
A = 0.048952 B = 0.002657 C = 0.002550
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 571.848312 B =10534.347287 C =10977.853768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.008 4.008
3 Si 0.993 3.007
4 H -0.276 1.276
5 H -0.268 1.268
6 H -0.269 1.269
7 C -0.336 4.336
8 H 0.077 0.923
9 N -0.561 5.561
10 C 0.448 3.552
11 O -0.622 6.622
12 C -0.104 4.104
13 S -0.196 6.196
14 C -0.129 4.129
15 C 0.531 3.469
16 O -0.567 6.567
17 N -0.613 5.613
18 C 0.065 3.935
19 C 0.043 3.957
20 O -0.394 6.394
21 C 0.054 3.946
22 C 0.074 3.926
23 H 0.280 0.720
24 H 0.400 0.600
25 H 0.127 0.873
26 H 0.127 0.873
27 H 0.141 0.859
28 H 0.142 0.858
29 H 0.094 0.906
30 H 0.119 0.881
31 H 0.057 0.943
32 H 0.133 0.867
33 H 0.052 0.948
34 H 0.127 0.873
35 H 0.084 0.916
36 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.678 -23.536 -1.181 25.113
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.208 4.208
3 Si 0.816 3.184
4 H -0.201 1.201
5 H -0.193 1.193
6 H -0.194 1.194
7 C -0.466 4.466
8 H 0.095 0.905
9 N -0.198 5.198
10 C 0.235 3.765
11 O -0.509 6.509
12 C -0.255 4.255
13 S 0.029 5.971
14 C -0.279 4.279
15 C 0.319 3.681
16 O -0.445 6.445
17 N -0.348 5.348
18 C -0.057 4.057
19 C -0.034 4.034
20 O -0.313 6.313
21 C -0.023 4.023
22 C -0.049 4.049
23 H 0.089 0.911
24 H 0.235 0.765
25 H 0.146 0.854
26 H 0.145 0.855
27 H 0.159 0.841
28 H 0.160 0.840
29 H 0.112 0.888
30 H 0.137 0.863
31 H 0.076 0.924
32 H 0.151 0.849
33 H 0.070 0.930
34 H 0.144 0.856
35 H 0.103 0.897
36 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -6.387 -23.467 -1.148 24.348
hybrid contribution -1.087 1.196 0.007 1.617
sum -7.474 -22.271 -1.142 23.519
Atomic orbital electron populations
1.69657 1.06714 1.29477 1.49731 1.26026 0.96584 1.02305 0.95925
0.84876 0.77957 0.77026 0.78519 1.20064 1.19338 1.19362 1.19700
0.92717 0.83854 1.50300 0.90475 1.41789 1.09437 1.04219 1.64336
1.19987 0.87835 0.85493 0.83211 1.90557 1.15865 1.87586 1.56937
1.23316 1.00638 0.93040 1.08526 1.88635 1.12590 0.97566 1.98285
1.23595 1.01661 0.92837 1.09810 1.20072 0.87761 0.84791 0.75458
1.90754 1.16319 1.86700 1.50757 1.48169 1.08600 1.04712 1.73313
1.22902 0.77919 1.03269 1.01567 1.23271 0.98202 0.84878 0.97063
1.87957 1.18095 1.31920 1.93288 1.23005 0.81627 1.01182 0.96530
1.22386 0.96832 0.84543 1.01098 0.91057 0.76500 0.85446 0.85476
0.84070 0.84015 0.88761 0.86302 0.92425 0.84890 0.92973 0.85554
0.89717 0.89517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.28 13.05 21.66 0.28 -47.99 16
2 C -0.01 -0.42 5.50 84.93 0.47 0.05 16
3 Si 0.99 42.71 29.55 68.60 2.03 44.74 16
4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16
6 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16
7 C -0.34 -19.12 9.68 84.04 0.81 -18.31 16
8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16
9 N -0.56 -28.54 5.29 -306.99 -1.62 -30.16 16
10 C 0.45 21.71 7.80 87.66 0.68 22.39 16
11 O -0.62 -36.32 15.44 -3.08 -0.05 -36.36 16
12 C -0.10 -3.46 6.42 71.24 0.46 -3.01 16
13 S -0.20 -6.96 20.01 -56.49 -1.13 -8.09 16
14 C -0.13 -2.65 4.80 71.24 0.34 -2.31 16
15 C 0.53 13.27 7.73 87.66 0.68 13.95 16
16 O -0.57 -20.29 15.33 -3.06 -0.05 -20.34 16
17 N -0.61 -10.61 3.01 -816.61 -2.46 -13.07 16
18 C 0.07 0.58 6.57 86.50 0.57 1.15 16
19 C 0.04 0.37 7.00 72.22 0.51 0.87 16
20 O -0.39 -5.38 10.74 -148.98 -1.60 -6.98 16
21 C 0.05 0.68 6.98 72.07 0.50 1.18 16
22 C 0.07 1.19 6.63 86.34 0.57 1.77 16
23 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16
24 H 0.40 18.80 7.90 -92.70 -0.73 18.06 16
25 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16
26 H 0.13 3.40 8.14 -2.39 -0.02 3.39 16
27 H 0.14 2.00 8.01 -2.39 -0.02 1.98 16
28 H 0.14 1.96 7.67 -2.39 -0.02 1.94 16
29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.12 0.54 6.05 -2.39 -0.01 0.52 16
31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16
32 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16
33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.08 1.72 7.08 -2.39 -0.02 1.70 16
36 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16
Total: -1.00 -80.75 320.18 1.36 -79.38
By element:
Atomic # 1 Polarization: 20.78 SS G_CDS: 0.37 Total: 21.15 kcal
Atomic # 6 Polarization: 12.14 SS G_CDS: 5.59 Total: 17.73 kcal
Atomic # 7 Polarization: -87.43 SS G_CDS: -3.80 Total: -91.23 kcal
Atomic # 8 Polarization: -61.99 SS G_CDS: -1.69 Total: -63.68 kcal
Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal
Atomic # 16 Polarization: -6.96 SS G_CDS: -1.13 Total: -8.09 kcal
Total: -80.75 1.36 -79.38 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701266333.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.900 kcal
(2) G-P(sol) polarization free energy of solvation -80.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.647 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.96 seconds