Wall clock time and date at job start Tue Mar 31 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00278 * 2 1 4 4 C 1.53008 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.50741 * 60.08293 * 4 3 2 6 6 O 1.20827 * 119.99654 * 94.91078 * 5 4 3 7 7 O 1.34226 * 120.00299 * 274.91725 * 5 4 3 8 8 C 1.53100 * 109.50392 * 180.21467 * 4 3 2 9 9 N 1.47010 * 109.25613 * 63.08853 * 8 4 3 10 10 C 1.46903 * 110.99579 * 182.39190 * 9 8 4 11 11 H 1.08996 * 109.47576 * 55.71512 * 10 9 8 12 12 C 1.53004 * 109.46723 * 175.71390 * 10 9 8 13 13 C 1.52994 * 109.47159 * 295.70914 * 10 9 8 14 14 C 1.50698 * 109.47630 * 175.80561 * 13 10 9 15 15 H 1.08005 * 119.99278 * 354.97984 * 14 13 10 16 16 C 1.37870 * 120.00580 * 174.97409 * 14 13 10 17 17 N 1.31512 * 120.00316 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99940 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47025 * 89.99596 * 18 16 14 20 20 H 1.48493 * 109.47217 * 209.99823 * 18 16 14 21 21 H 1.48500 * 109.46984 * 329.99919 * 18 16 14 22 22 C 1.47010 * 110.75591 * 58.61214 * 9 8 4 23 23 C 1.53096 * 109.25818 * 301.38479 * 22 9 8 24 24 O 1.43009 * 109.25961 * 56.84741 * 23 22 9 25 25 H 1.08993 * 109.47615 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46893 * 300.00516 * 1 2 3 27 27 H 1.09000 * 109.46480 * 59.99949 * 1 2 3 28 28 H 1.08994 * 109.47464 * 59.99936 * 3 2 1 29 29 H 1.09000 * 109.46948 * 299.99759 * 3 2 1 30 30 H 0.96696 * 117.00408 * 180.02562 * 7 5 4 31 31 H 1.08996 * 109.50583 * 303.14748 * 8 4 3 32 32 H 1.08994 * 109.50204 * 183.01966 * 8 4 3 33 33 H 1.08998 * 109.47453 * 60.00032 * 12 10 9 34 34 H 1.09001 * 109.47123 * 299.99585 * 12 10 9 35 35 H 1.09002 * 109.46654 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47706 * 295.81415 * 13 10 9 37 37 H 1.09001 * 109.46878 * 55.80684 * 13 10 9 38 38 H 0.97001 * 119.99828 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.50757 * 61.31803 * 22 9 8 40 40 H 1.09001 * 109.50550 * 181.44806 * 22 9 8 41 41 H 1.09003 * 109.50688 * 176.78704 * 23 22 9 42 42 H 1.09002 * 109.50557 * 296.90808 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 3.9818 0.4382 -1.2302 6 8 4.3176 1.0480 -2.2178 7 8 4.0060 -0.9038 -1.2296 8 6 4.1592 2.5827 0.0061 9 7 3.7821 3.2769 1.2458 10 6 4.3146 4.6459 1.2653 11 1 3.9768 5.1799 0.3771 12 6 3.8140 5.3700 2.5168 13 6 5.8437 4.5983 1.2810 14 6 6.3909 5.9999 1.1970 15 1 5.7195 6.8341 1.0567 16 6 7.7485 6.2172 1.2994 17 7 8.2261 7.4404 1.2256 18 14 8.9099 4.7742 1.5415 19 1 9.3433 4.2601 0.2174 20 1 10.0981 5.2191 2.3129 21 1 8.2112 3.6962 2.2865 22 6 4.2308 2.5203 2.4237 23 6 3.6064 1.1228 2.3940 24 8 3.9579 0.4751 1.1684 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.6888 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 4.2999 -1.3381 -2.0421 31 1 3.7950 3.1469 -0.8524 32 1 5.2445 2.4973 -0.0476 33 1 4.1518 4.8361 3.4050 34 1 2.7246 5.4040 2.5056 35 1 4.2094 6.3857 2.5314 36 1 6.1832 4.1304 2.2051 37 1 6.1979 4.0183 0.4288 38 1 9.1813 7.5932 1.2972 39 1 5.3172 2.4339 2.4087 40 1 3.9187 3.0392 3.3301 41 1 3.9810 0.5389 3.2348 42 1 2.5219 1.2071 2.4632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711534894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:43 Heat of formation + Delta-G solvation = -163.964284 kcal Electronic energy + Delta-G solvation = -24898.878374 eV Core-core repulsion = 21265.926426 eV Total energy + Delta-G solvation = -3632.951948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 4.63 seconds Orbital eigenvalues (eV) -41.01062 -39.36223 -37.76174 -36.56874 -36.13836 -32.98501 -32.29471 -31.07816 -28.53858 -27.76656 -26.62686 -24.91190 -24.50304 -23.17057 -22.14297 -19.97243 -18.85803 -18.25896 -17.43350 -16.96355 -16.74174 -16.30480 -15.80159 -15.61198 -15.09128 -14.85566 -14.55059 -14.22554 -13.85976 -13.74463 -13.62840 -13.37816 -12.70788 -12.58532 -12.41509 -12.22554 -11.73145 -11.60691 -11.51626 -11.33939 -11.18960 -11.06808 -10.95895 -10.64253 -10.46873 -10.18910 -9.96089 -9.83460 -9.76023 -9.63197 -9.23898 -8.58752 -7.91121 -6.09714 -4.07799 2.04697 2.83765 3.26612 3.31912 3.34336 3.36330 3.74280 4.22985 4.39973 4.60969 4.70948 5.02949 5.10244 5.15462 5.16598 5.22093 5.24517 5.27854 5.35405 5.47800 5.58512 5.61924 5.76487 5.87544 5.97587 6.01039 6.11046 6.20289 6.41085 6.56222 6.61176 6.85180 6.87825 6.98366 7.02802 7.08229 7.32212 7.42714 7.76716 7.88250 8.46411 8.94140 9.52776 11.03272 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.005153 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.944395 B = 5432.794193 C = 5958.093830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.045 3.955 4 C 0.141 3.859 5 C 0.509 3.491 6 O -0.506 6.506 7 O -0.489 6.489 8 C 0.039 3.961 9 N -0.533 5.533 10 C 0.091 3.909 11 H 0.080 0.920 12 C -0.129 4.129 13 C -0.043 4.043 14 C -0.514 4.514 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.004 3.996 23 C 0.062 3.938 24 O -0.353 6.353 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.404 0.596 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.021 0.979 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 -15.397 -0.044 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.032 4.032 4 C 0.099 3.901 5 C 0.349 3.651 6 O -0.394 6.394 7 O -0.298 6.298 8 C -0.089 4.089 9 N -0.258 5.258 10 C -0.016 4.016 11 H 0.098 0.902 12 C -0.187 4.187 13 C -0.081 4.081 14 C -0.552 4.552 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.124 4.124 23 C -0.015 4.015 24 O -0.272 6.272 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.262 0.738 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.503 -15.240 0.076 21.039 hybrid contribution 1.593 -0.491 -0.468 1.731 sum -12.911 -15.732 -0.392 20.355 Atomic orbital electron populations 1.22747 0.81074 1.02694 1.00010 1.87997 1.19497 1.26691 1.95481 1.23026 0.91137 0.85756 1.03285 1.21263 0.93535 0.91429 0.83910 1.22597 0.72940 0.81033 0.88481 1.90772 1.44274 1.69354 1.35013 1.84657 1.79387 1.21002 1.44788 1.22497 1.00022 0.91044 0.95363 1.62672 1.59058 1.03604 1.00436 1.21708 0.95162 0.85339 0.99381 0.90188 1.21737 0.99034 1.01535 0.96391 1.20217 0.92676 0.98771 0.96483 1.20978 0.92751 0.91561 1.49926 0.90649 1.24992 0.98255 0.95317 0.94610 1.69899 1.13496 1.19864 1.50694 0.86862 0.80776 0.83433 0.78689 1.20313 1.21278 1.19237 1.22930 0.99724 0.94197 0.95592 1.22830 0.99767 0.92869 0.85997 1.88127 1.79184 1.47150 1.12714 0.89575 0.93942 0.94199 0.89406 0.91781 0.73801 0.88256 0.91710 0.93488 0.93812 0.90692 0.96068 0.97130 0.92693 0.92808 0.88790 0.87979 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.76 10.14 -44.98 -0.46 -5.22 16 3 C 0.04 0.57 4.37 37.16 0.16 0.73 16 4 C 0.14 2.09 0.84 -91.72 -0.08 2.01 16 5 C 0.51 7.72 6.88 36.01 0.25 7.97 16 6 O -0.51 -8.67 16.93 -18.75 -0.32 -8.99 16 7 O -0.49 -6.21 13.08 -44.44 -0.58 -6.79 16 8 C 0.04 0.65 3.47 -3.71 -0.01 0.64 16 9 N -0.53 -8.52 4.09 -226.34 -0.92 -9.45 16 10 C 0.09 1.70 2.40 -67.71 -0.16 1.54 16 11 H 0.08 1.55 8.13 -51.93 -0.42 1.13 16 12 C -0.13 -2.23 8.79 37.16 0.33 -1.91 16 13 C -0.04 -0.99 2.82 -27.89 -0.08 -1.07 16 14 C -0.51 -14.09 8.85 -34.44 -0.30 -14.39 16 15 H 0.08 2.20 7.44 -52.48 -0.39 1.81 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 18 Si 0.87 21.83 27.57 -169.99 -4.69 17.14 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.44 6.40 56.52 0.36 -6.07 16 22 C 0.00 0.06 4.86 -3.71 -0.02 0.04 16 23 C 0.06 0.79 6.61 37.21 0.25 1.04 16 24 O -0.35 -5.40 9.97 -57.91 -0.58 -5.98 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 1.06 6.12 -51.93 -0.32 0.75 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.40 3.08 9.10 45.56 0.41 3.50 16 31 H 0.10 1.61 7.98 -51.93 -0.41 1.20 16 32 H 0.06 1.22 6.45 -51.93 -0.34 0.89 16 33 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.02 0.50 5.39 -51.93 -0.28 0.22 16 37 H 0.01 0.25 6.04 -51.93 -0.31 -0.06 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.05 0.92 6.53 -51.93 -0.34 0.59 16 40 H 0.09 1.27 6.20 -51.93 -0.32 0.95 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -33.08 329.12 -5.93 -39.01 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.46 Total: 2.04 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 1.34 Total: -0.10 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.15 Total: -36.07 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.93 Total: -26.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.69 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.08 -5.93 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711534894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.956 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.63 seconds