Wall clock time and date at job start Tue Mar 31 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99760 * 2 1 4 4 C 1.52997 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.54687 * 305.11257 * 4 3 2 6 6 O 1.20825 * 120.00037 * 264.89516 * 5 4 3 7 7 O 1.34226 * 120.00238 * 84.88592 * 5 4 3 8 8 C 1.53105 * 109.50700 * 185.00165 * 4 3 2 9 9 N 1.47008 * 109.25767 * 296.91955 * 8 4 3 10 10 C 1.46900 * 111.00004 * 177.60604 * 9 8 4 11 11 H 1.09001 * 109.46884 * 179.44872 * 10 9 8 12 12 C 1.52993 * 109.47147 * 59.45394 * 10 9 8 13 13 C 1.52995 * 109.47020 * 299.45044 * 10 9 8 14 14 C 1.50701 * 109.47167 * 296.82357 * 13 10 9 15 15 H 1.08003 * 119.99943 * 354.99071 * 14 13 10 16 16 C 1.37878 * 120.00024 * 174.99245 * 14 13 10 17 17 N 1.31512 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99917 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46656 * 120.00066 * 18 16 14 21 21 H 1.48496 * 109.47040 * 239.99999 * 18 16 14 22 22 C 1.47023 * 110.75125 * 301.38212 * 9 8 4 23 23 C 1.53098 * 109.25974 * 58.61619 * 22 9 8 24 24 O 1.43017 * 109.25645 * 303.15131 * 23 22 9 25 25 H 1.08995 * 109.47785 * 300.00016 * 1 2 3 26 26 H 1.09003 * 109.47173 * 60.00052 * 1 2 3 27 27 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46572 * 60.00218 * 3 2 1 29 29 H 1.08988 * 109.47225 * 299.99922 * 3 2 1 30 30 H 0.96698 * 117.00354 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.50859 * 176.97669 * 8 4 3 32 32 H 1.09000 * 109.50241 * 56.84898 * 8 4 3 33 33 H 1.08997 * 109.47101 * 180.02562 * 12 10 9 34 34 H 1.09004 * 109.46752 * 300.00058 * 12 10 9 35 35 H 1.08993 * 109.47861 * 59.99831 * 12 10 9 36 36 H 1.09001 * 109.47362 * 56.82170 * 13 10 9 37 37 H 1.08995 * 109.47268 * 176.82663 * 13 10 9 38 38 H 0.97001 * 120.00096 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.50364 * 178.55390 * 22 9 8 40 40 H 1.09003 * 109.50158 * 298.68475 * 22 9 8 41 41 H 1.08992 * 109.50514 * 183.21828 * 23 22 9 42 42 H 1.08999 * 109.50626 * 63.08512 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9730 0.3308 1.1627 6 8 4.3044 0.8494 2.2024 7 8 3.9945 -1.0059 1.0428 8 6 4.1585 2.5775 0.1265 9 7 3.7910 3.3811 -1.0484 10 6 4.3229 4.7461 -0.9400 11 1 4.0447 5.3159 -1.8266 12 6 5.8477 4.6917 -0.8265 13 6 3.7427 5.4222 0.3038 14 6 2.2480 5.5461 0.1571 15 1 1.7699 5.2538 -0.7663 16 6 1.4907 6.0325 1.2015 17 7 2.0728 6.3889 2.3257 18 14 -0.3621 6.1867 1.0194 19 1 -0.7668 5.7233 -0.3321 20 1 -1.0317 5.3524 2.0494 21 1 -0.7604 7.6062 1.1964 22 6 4.2493 2.7337 -2.2863 23 6 3.6253 1.3394 -2.3880 24 8 3.9674 0.5835 -1.2231 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 4.2821 -1.5115 1.8153 31 1 5.2434 2.4873 0.1810 32 1 3.7871 3.0621 1.0294 33 1 6.2423 5.7044 -0.7456 34 1 6.1259 4.1217 0.0600 35 1 6.2611 4.2100 -1.7125 36 1 3.9728 4.8223 1.1843 37 1 4.1802 6.4142 0.4155 38 1 1.5400 6.7308 3.0606 39 1 3.9443 3.3325 -3.1446 40 1 5.3357 2.6460 -2.2704 41 1 4.0069 0.8337 -3.2749 42 1 2.5414 1.4299 -2.4578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711534896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:03 Heat of formation + Delta-G solvation = -164.110515 kcal Electronic energy + Delta-G solvation = -25392.472887 eV Core-core repulsion = 21759.514598 eV Total energy + Delta-G solvation = -3632.958289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.80336 -39.16398 -37.45566 -36.40240 -35.91920 -32.88863 -32.00712 -30.99311 -28.00978 -27.43410 -26.32123 -24.85669 -24.54486 -23.24241 -21.69986 -19.94750 -18.85665 -17.94496 -17.19270 -16.63944 -16.25458 -15.97473 -15.75074 -15.32206 -14.78615 -14.77326 -14.54976 -14.27931 -13.73361 -13.69003 -13.36233 -13.08765 -12.47811 -12.28103 -12.07902 -11.86480 -11.62705 -11.51475 -11.33258 -11.27399 -11.17986 -10.95202 -10.74887 -10.61045 -10.44061 -10.11650 -10.06297 -9.56963 -9.48300 -9.18459 -9.03933 -8.32944 -7.71607 -5.94810 -3.93746 2.27775 3.03793 3.31456 3.39980 3.43060 3.60215 3.94895 4.40328 4.49547 4.88747 5.03571 5.18835 5.31846 5.35060 5.42321 5.45823 5.50147 5.51870 5.66986 5.70072 5.75892 5.78988 5.84403 5.89730 5.91838 6.07686 6.11700 6.27461 6.47696 6.59136 6.61558 6.85241 7.08415 7.26294 7.34089 7.49522 7.74176 7.85734 8.04586 8.09291 8.48796 9.12112 9.68115 11.16837 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.007289 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.037659 B = 3840.672222 C = 4620.427052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.045 3.955 4 C 0.143 3.857 5 C 0.509 3.491 6 O -0.504 6.504 7 O -0.491 6.491 8 C 0.044 3.956 9 N -0.507 5.507 10 C 0.088 3.912 11 H 0.076 0.924 12 C -0.187 4.187 13 C 0.025 3.975 14 C -0.494 4.494 15 H 0.061 0.939 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.885 3.115 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.286 1.286 22 C 0.007 3.993 23 C 0.061 3.939 24 O -0.359 6.359 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.402 0.598 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.099 0.901 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -12.151 -7.383 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.031 4.031 4 C 0.102 3.898 5 C 0.350 3.650 6 O -0.391 6.391 7 O -0.300 6.300 8 C -0.085 4.085 9 N -0.231 5.231 10 C -0.019 4.019 11 H 0.094 0.906 12 C -0.246 4.246 13 C -0.012 4.012 14 C -0.532 4.532 15 H 0.079 0.921 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.713 3.287 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.122 4.122 23 C -0.015 4.015 24 O -0.278 6.278 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.966 -12.016 -7.310 14.201 hybrid contribution -0.332 0.282 0.567 0.715 sum 1.633 -11.734 -6.743 13.632 Atomic orbital electron populations 1.22720 0.81156 1.02278 1.00302 1.87924 1.19515 1.27260 1.95604 1.23043 0.90636 0.85142 1.04309 1.21295 0.93974 0.91480 0.83096 1.22608 0.72849 0.81323 0.88232 1.90778 1.44198 1.74351 1.29806 1.84661 1.79810 1.19574 1.45983 1.22560 0.98137 0.89956 0.97806 1.62385 1.58681 1.02385 0.99646 1.21946 0.90056 0.87343 1.02550 0.90623 1.22532 0.99397 1.02005 1.00638 1.19276 0.96139 0.94998 0.90831 1.21151 0.91779 1.40637 0.99663 0.92108 1.25002 0.98080 0.96118 0.95541 1.69964 1.35172 1.44591 1.04137 0.86649 0.86500 0.77585 0.77941 1.19772 1.21305 1.21275 1.22898 0.98307 0.95799 0.95160 1.22777 1.00257 0.91039 0.87464 1.88083 1.79158 1.47582 1.12944 0.94027 0.93996 0.89838 0.90819 0.89349 0.74086 0.93346 0.86368 0.92194 0.92826 0.93835 0.95694 0.96312 0.93251 0.89615 0.94100 0.88284 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.20 9.99 -42.98 -0.43 -6.63 16 3 C 0.05 0.78 4.48 37.16 0.17 0.95 16 4 C 0.14 2.48 0.85 -91.72 -0.08 2.40 16 5 C 0.51 8.82 6.78 36.01 0.24 9.07 16 6 O -0.50 -9.86 16.93 -18.75 -0.32 -10.18 16 7 O -0.49 -7.02 12.98 -44.96 -0.58 -7.60 16 8 C 0.04 0.82 3.04 -3.71 -0.01 0.80 16 9 N -0.51 -9.08 3.85 -226.33 -0.87 -9.95 16 10 C 0.09 1.70 2.33 -67.72 -0.16 1.54 16 11 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 12 C -0.19 -3.11 8.49 37.15 0.32 -2.80 16 13 C 0.02 0.60 4.22 -27.88 -0.12 0.48 16 14 C -0.49 -13.13 8.79 -34.44 -0.30 -13.43 16 15 H 0.06 1.60 7.75 -52.48 -0.41 1.19 16 16 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 17 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 18 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.01 0.10 5.29 -3.71 -0.02 0.08 16 23 C 0.06 0.83 6.61 37.21 0.25 1.07 16 24 O -0.36 -5.84 10.04 -55.53 -0.56 -6.39 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.51 6.02 -51.94 -0.31 1.20 16 30 H 0.40 3.65 9.10 45.56 0.41 4.07 16 31 H 0.05 0.89 6.43 -51.93 -0.33 0.56 16 32 H 0.12 2.60 5.98 -51.93 -0.31 2.29 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.93 6.45 -51.93 -0.33 0.59 16 35 H 0.04 0.63 6.55 -51.93 -0.34 0.29 16 36 H 0.02 0.66 6.20 -51.93 -0.32 0.33 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.58 6.54 -51.93 -0.34 0.24 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -32.05 334.25 -6.26 -38.31 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.56 Total: 3.79 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 1.30 Total: 3.06 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.13 Total: -35.66 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.89 Total: -30.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.05 -6.26 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711534896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.799 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds