Wall clock time and date at job start Tue Mar 31 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99760 * 2 1 4 4 C 1.52997 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.54687 * 305.11257 * 4 3 2 6 6 O 1.20825 * 120.00037 * 264.89516 * 5 4 3 7 7 O 1.34226 * 120.00238 * 84.88592 * 5 4 3 8 8 C 1.53105 * 109.50700 * 185.00165 * 4 3 2 9 9 N 1.47008 * 109.25767 * 296.91955 * 8 4 3 10 10 C 1.46900 * 111.00004 * 177.60604 * 9 8 4 11 11 H 1.09001 * 109.46884 * 179.44872 * 10 9 8 12 12 C 1.52993 * 109.47147 * 59.45394 * 10 9 8 13 13 C 1.52995 * 109.47020 * 299.45044 * 10 9 8 14 14 C 1.50701 * 109.47167 * 296.82357 * 13 10 9 15 15 H 1.08003 * 119.99943 * 354.99071 * 14 13 10 16 16 C 1.37878 * 120.00024 * 174.99245 * 14 13 10 17 17 N 1.31512 * 120.00073 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99917 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46656 * 120.00066 * 18 16 14 21 21 H 1.48496 * 109.47040 * 239.99999 * 18 16 14 22 22 C 1.47023 * 110.75125 * 301.38212 * 9 8 4 23 23 C 1.53098 * 109.25974 * 58.61619 * 22 9 8 24 24 O 1.43017 * 109.25645 * 303.15131 * 23 22 9 25 25 H 1.08995 * 109.47785 * 300.00016 * 1 2 3 26 26 H 1.09003 * 109.47173 * 60.00052 * 1 2 3 27 27 H 1.09005 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46572 * 60.00218 * 3 2 1 29 29 H 1.08988 * 109.47225 * 299.99922 * 3 2 1 30 30 H 0.96698 * 117.00354 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.50859 * 176.97669 * 8 4 3 32 32 H 1.09000 * 109.50241 * 56.84898 * 8 4 3 33 33 H 1.08997 * 109.47101 * 180.02562 * 12 10 9 34 34 H 1.09004 * 109.46752 * 300.00058 * 12 10 9 35 35 H 1.08993 * 109.47861 * 59.99831 * 12 10 9 36 36 H 1.09001 * 109.47362 * 56.82170 * 13 10 9 37 37 H 1.08995 * 109.47268 * 176.82663 * 13 10 9 38 38 H 0.97001 * 120.00096 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.50364 * 178.55390 * 22 9 8 40 40 H 1.09003 * 109.50158 * 298.68475 * 22 9 8 41 41 H 1.08992 * 109.50514 * 183.21828 * 23 22 9 42 42 H 1.08999 * 109.50626 * 63.08512 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9730 0.3308 1.1627 6 8 4.3044 0.8494 2.2024 7 8 3.9945 -1.0059 1.0428 8 6 4.1585 2.5775 0.1265 9 7 3.7910 3.3811 -1.0484 10 6 4.3229 4.7461 -0.9400 11 1 4.0447 5.3159 -1.8266 12 6 5.8477 4.6917 -0.8265 13 6 3.7427 5.4222 0.3038 14 6 2.2480 5.5461 0.1571 15 1 1.7699 5.2538 -0.7663 16 6 1.4907 6.0325 1.2015 17 7 2.0728 6.3889 2.3257 18 14 -0.3621 6.1867 1.0194 19 1 -0.7668 5.7233 -0.3321 20 1 -1.0317 5.3524 2.0494 21 1 -0.7604 7.6062 1.1964 22 6 4.2493 2.7337 -2.2863 23 6 3.6253 1.3394 -2.3880 24 8 3.9674 0.5835 -1.2231 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 4.2821 -1.5115 1.8153 31 1 5.2434 2.4873 0.1810 32 1 3.7871 3.0621 1.0294 33 1 6.2423 5.7044 -0.7456 34 1 6.1259 4.1217 0.0600 35 1 6.2611 4.2100 -1.7125 36 1 3.9728 4.8223 1.1843 37 1 4.1802 6.4142 0.4155 38 1 1.5400 6.7308 3.0606 39 1 3.9443 3.3325 -3.1446 40 1 5.3357 2.6460 -2.2704 41 1 4.0069 0.8337 -3.2749 42 1 2.5414 1.4299 -2.4578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711534896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:02 Heat of formation + Delta-G solvation = -188.090842 kcal Electronic energy + Delta-G solvation = -25393.512752 eV Core-core repulsion = 21759.514598 eV Total energy + Delta-G solvation = -3633.998154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13809 -40.49760 -38.75143 -37.76696 -37.21349 -34.87543 -33.29637 -32.56992 -29.35562 -29.16524 -27.50613 -26.19777 -25.88046 -25.08869 -23.04724 -21.41364 -20.20956 -19.30024 -18.53687 -18.34946 -17.88693 -17.30551 -17.03619 -16.63224 -16.43406 -16.07075 -16.00846 -15.64940 -15.10112 -15.06253 -14.63568 -14.55495 -14.00688 -13.84122 -13.61644 -13.27970 -13.10006 -13.00026 -12.78719 -12.64212 -12.59533 -12.39430 -12.34114 -12.19115 -11.95770 -11.93012 -11.41942 -11.09603 -11.04007 -10.75376 -10.66784 -10.48405 -9.11404 -8.08739 -6.13613 0.92460 1.40042 1.41856 1.53448 1.79426 2.35371 2.46737 2.68881 3.07938 3.28160 3.53436 3.74282 4.00527 4.05317 4.15791 4.20132 4.30074 4.33748 4.40226 4.50111 4.53255 4.54579 4.60602 4.62683 4.75866 4.81145 4.88284 4.96921 5.02425 5.15375 5.24399 5.41783 5.47464 5.68644 5.86849 5.89200 6.05598 6.12566 6.25651 6.43881 6.91264 7.00991 7.52267 9.03492 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.007289 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.037659 B = 3840.672222 C = 4620.427052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.055 3.945 4 C 0.145 3.855 5 C 0.512 3.488 6 O -0.536 6.536 7 O -0.483 6.483 8 C 0.055 3.945 9 N -0.519 5.519 10 C 0.097 3.903 11 H 0.084 0.916 12 C -0.178 4.178 13 C 0.029 3.971 14 C -0.493 4.493 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.940 5.940 18 Si 0.949 3.051 19 H -0.257 1.257 20 H -0.288 1.288 21 H -0.285 1.285 22 C 0.008 3.992 23 C 0.058 3.942 24 O -0.362 6.362 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.425 0.575 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.073 0.927 36 H -0.005 1.005 37 H -0.007 1.007 38 H 0.256 0.744 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.137 0.863 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -13.696 -9.968 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.022 4.022 4 C 0.104 3.896 5 C 0.353 3.647 6 O -0.427 6.427 7 O -0.294 6.294 8 C -0.074 4.074 9 N -0.243 5.243 10 C -0.011 4.011 11 H 0.102 0.898 12 C -0.236 4.236 13 C -0.008 4.008 14 C -0.531 4.531 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.582 5.582 18 Si 0.775 3.225 19 H -0.181 1.181 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.120 4.120 23 C -0.018 4.018 24 O -0.281 6.281 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.286 0.714 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.155 0.845 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.424 -13.598 -9.924 16.895 hybrid contribution -0.159 0.688 1.342 1.516 sum 1.266 -12.910 -8.583 15.555 Atomic orbital electron populations 1.22971 0.79405 1.04194 1.00604 1.87903 1.21418 1.26271 1.95599 1.22824 0.90762 0.85616 1.02985 1.21080 0.93886 0.90657 0.84023 1.22629 0.72148 0.82172 0.87712 1.90768 1.45823 1.75130 1.30982 1.84596 1.79229 1.18166 1.47406 1.22263 0.97829 0.90698 0.96570 1.62281 1.59327 1.01870 1.00838 1.21678 0.91518 0.88045 0.99872 0.89762 1.22414 0.97433 1.02369 1.01414 1.19133 0.95469 0.93671 0.92507 1.21481 0.92972 1.39205 0.99447 0.91643 1.25840 1.02753 0.96173 0.95334 1.70111 1.36869 1.46146 1.05056 0.85633 0.81008 0.77399 0.78470 1.18069 1.21397 1.21113 1.23036 0.98961 0.96364 0.93647 1.23063 1.00533 0.90669 0.87555 1.88084 1.79134 1.47873 1.12997 0.94518 0.92909 0.87147 0.93599 0.89166 0.71408 0.93543 0.90798 0.91940 0.94135 0.90835 0.98713 0.98879 0.93476 0.87481 0.93193 0.84493 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -12.14 9.99 -141.58 -1.41 -13.55 16 3 C 0.06 1.89 4.48 71.98 0.32 2.21 16 4 C 0.15 4.99 0.85 -11.51 -0.01 4.98 16 5 C 0.51 17.68 6.78 71.24 0.48 18.17 16 6 O -0.54 -21.64 16.93 21.97 0.37 -21.27 16 7 O -0.48 -13.05 12.98 -45.91 -0.60 -13.65 16 8 C 0.06 2.10 3.04 86.32 0.26 2.36 16 9 N -0.52 -18.15 3.85 -869.97 -3.35 -21.50 16 10 C 0.10 3.67 2.33 44.91 0.10 3.78 16 11 H 0.08 3.07 8.13 -2.39 -0.02 3.05 16 12 C -0.18 -5.74 8.49 71.98 0.61 -5.13 16 13 C 0.03 1.48 4.22 29.85 0.13 1.61 16 14 C -0.49 -26.66 8.79 25.60 0.23 -26.43 16 15 H 0.07 3.42 7.75 -2.91 -0.02 3.39 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 18 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 C 0.01 0.19 5.29 86.31 0.46 0.65 16 23 C 0.06 1.36 6.61 72.01 0.48 1.84 16 24 O -0.36 -10.93 10.04 -129.57 -1.30 -12.23 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 3.01 6.02 -2.39 -0.01 2.99 16 30 H 0.42 6.99 9.10 -74.06 -0.67 6.31 16 31 H 0.05 1.75 6.43 -2.39 -0.02 1.73 16 32 H 0.07 3.48 5.98 -2.39 -0.01 3.46 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.40 6.45 -2.39 -0.02 1.39 16 35 H 0.07 1.94 6.55 -2.39 -0.02 1.92 16 36 H -0.01 -0.31 6.20 -2.39 -0.01 -0.32 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.05 1.22 6.54 -2.39 -0.02 1.21 16 41 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 1.53 6.38 -2.39 -0.02 1.52 16 Total: -1.00 -71.05 334.25 1.15 -69.90 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.36 Total: 17.21 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.77 Total: 6.03 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -3.06 Total: -78.60 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -2.94 Total: -60.71 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.05 1.15 -69.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711534896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.188 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds