Wall clock time and date at job start Tue Mar 31 2020 04:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39993 * 120.46014 * 101.08857 * 3 2 1 5 5 C 1.38215 * 118.36802 * 179.97438 * 4 3 2 6 6 C 1.39532 * 119.20850 * 359.97438 * 5 4 3 7 7 C 1.47872 * 119.57595 * 179.97438 * 6 5 4 8 8 O 1.21451 * 119.99824 * 359.97438 * 7 6 5 9 9 O 1.34709 * 120.00051 * 180.02562 * 7 6 5 10 10 C 1.45207 * 117.00251 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47277 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00217 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00000 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00225 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47401 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00389 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00396 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99888 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47265 * 90.00229 * 19 17 15 21 21 H 1.48500 * 109.47389 * 210.00279 * 19 17 15 22 22 H 1.48497 * 109.47438 * 330.00251 * 19 17 15 23 23 N 1.32870 * 120.85116 * 0.02562 * 6 5 4 24 24 C 1.31274 * 121.78481 * 359.97438 * 23 6 5 25 25 H 4.52937 * 13.94808 * 0.02562 * 4 2 1 26 26 H 1.07997 * 120.81247 * 0.25101 * 4 3 2 27 27 H 1.08000 * 120.39504 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.46640 * 300.00024 * 10 9 7 29 29 H 1.09004 * 109.46746 * 59.99390 * 10 9 7 30 30 H 0.97005 * 119.99748 * 359.97438 * 13 11 10 31 31 H 1.08990 * 109.47272 * 300.00183 * 14 13 11 32 32 H 1.09004 * 109.47253 * 60.00320 * 14 13 11 33 33 H 0.96990 * 120.00057 * 179.97438 * 18 17 15 34 34 H 1.07995 * 119.64648 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3156 0.2330 -1.1842 5 6 4.6968 0.2245 -1.1346 6 6 5.3329 -0.0130 0.0844 7 6 6.8103 -0.0246 0.1467 8 8 7.4620 0.1715 -0.8592 9 8 7.4332 -0.2535 1.3189 10 6 8.8853 -0.2497 1.3056 11 6 9.4010 -0.5207 2.6954 12 8 8.6218 -0.6989 3.6074 13 7 10.7284 -0.5649 2.9248 14 6 11.2299 -0.8277 4.2759 15 6 12.7368 -0.8251 4.2619 16 1 13.2679 -0.6452 3.3388 17 6 13.4376 -1.0524 5.4273 18 7 14.7527 -1.0496 5.4151 19 14 12.5191 -1.3629 7.0239 20 1 12.2750 -2.8194 7.1794 21 1 13.3317 -0.8725 8.1660 22 1 11.2202 -0.6437 6.9958 23 7 4.6283 -0.2300 1.1898 24 6 3.3155 -0.2300 1.1841 25 1 -1.0500 0.0004 0.0002 26 1 2.7964 0.4189 -2.1128 27 1 5.2768 0.3996 -2.0286 28 1 9.2444 -1.0235 0.6271 29 1 9.2429 0.7234 0.9689 30 1 11.3517 -0.4226 2.1952 31 1 10.8712 -0.0532 4.9537 32 1 10.8718 -1.8003 4.6136 33 1 15.2456 -1.2092 6.2350 34 1 2.7774 -0.4099 2.1030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729008942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:40 Heat of formation + Delta-G solvation = -22.760344 kcal Electronic energy + Delta-G solvation = -20460.895585 eV Core-core repulsion = 16940.116613 eV Total energy + Delta-G solvation = -3520.778972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17747 -40.04032 -38.78360 -36.51215 -34.89738 -34.34616 -32.78080 -32.41625 -31.36650 -29.50893 -27.32894 -25.63515 -24.13900 -22.37299 -21.61439 -20.10073 -19.66006 -18.64823 -17.75574 -17.12523 -16.77325 -16.54127 -16.16729 -15.89422 -15.15029 -15.02558 -14.93943 -14.31369 -14.14847 -13.81993 -13.34138 -13.15931 -12.95579 -12.50326 -12.35021 -12.16451 -12.01644 -11.43332 -11.09389 -11.02132 -10.84031 -10.73522 -10.37473 -9.99790 -9.98407 -9.52660 -9.36658 -9.31069 -8.80180 -8.24173 -6.22844 -4.25806 -0.26015 0.69082 1.83349 2.10858 2.16578 2.66554 3.06386 3.27065 3.33650 3.42291 3.45830 3.48540 3.69282 3.96497 4.22819 4.32568 4.41832 4.46775 4.66890 4.99333 5.11649 5.15735 5.16947 5.21470 5.23977 5.40378 5.52816 5.95150 6.10914 6.75443 6.88161 7.03258 7.10802 7.17817 7.33640 7.55021 8.06908 8.43181 8.70312 8.82341 9.36391 10.88892 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035196 B = 0.002554 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.356031 B =10958.877349 C =11733.787615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.160 4.160 3 C -0.010 4.010 4 C -0.063 4.063 5 C -0.102 4.102 6 C 0.101 3.899 7 C 0.522 3.478 8 O -0.498 6.498 9 O -0.303 6.303 10 C 0.046 3.954 11 C 0.502 3.498 12 O -0.531 6.531 13 N -0.700 5.700 14 C 0.222 3.778 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 N -0.422 5.422 24 C 0.125 3.875 25 H 0.229 0.771 26 H 0.151 0.849 27 H 0.159 0.841 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.399 0.601 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.832 2.952 -15.014 30.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.161 4.161 3 C -0.012 4.012 4 C -0.088 4.088 5 C -0.122 4.122 6 C -0.035 4.035 7 C 0.364 3.636 8 O -0.385 6.385 9 O -0.216 6.216 10 C -0.032 4.032 11 C 0.285 3.715 12 O -0.408 6.408 13 N -0.351 5.351 14 C 0.101 3.899 15 C -0.583 4.583 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 N -0.132 5.132 24 C -0.037 4.037 25 H 0.246 0.754 26 H 0.169 0.831 27 H 0.176 0.824 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.233 0.767 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -25.440 2.702 -13.713 29.027 hybrid contribution -0.457 0.045 -0.357 0.582 sum -25.898 2.747 -14.071 29.601 Atomic orbital electron populations 1.25007 0.95766 0.97385 0.98044 1.19598 0.91499 1.02548 1.02474 1.17283 0.88241 1.00459 0.95211 1.21657 0.93144 0.95880 0.98129 1.22037 0.94726 0.96870 0.98532 1.20160 0.91127 1.01722 0.90468 1.20726 0.87762 0.73446 0.81645 1.90868 1.66357 1.45425 1.35884 1.86742 1.21463 1.80507 1.32862 1.22934 0.77486 1.04757 0.97989 1.19870 0.83689 0.78983 0.88991 1.90724 1.55947 1.49112 1.45018 1.46053 1.04767 1.70490 1.13781 1.19551 0.95163 0.96369 0.78863 1.21070 0.88316 1.51451 0.97499 0.90121 1.24790 0.94794 0.94008 0.99013 1.69876 1.05901 1.48448 1.28589 0.86813 0.80530 0.79440 0.82905 1.19792 1.20864 1.18426 1.67781 1.08048 1.08726 1.28618 1.23126 0.88800 0.94399 0.97335 0.75445 0.83142 0.82370 0.88043 0.88049 0.76733 0.95406 0.95865 0.92204 0.81071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 19.25 29.55 0.57 -0.16 16 2 C -0.16 -1.15 13.28 -38.84 -0.52 -1.66 16 3 C -0.01 -0.08 5.75 -106.67 -0.61 -0.69 16 4 C -0.06 -0.44 9.89 -38.93 -0.39 -0.82 16 5 C -0.10 -0.88 9.61 -39.11 -0.38 -1.26 16 6 C 0.10 1.23 6.75 -82.99 -0.56 0.67 16 7 C 0.52 7.39 7.94 34.67 0.28 7.67 16 8 O -0.50 -7.19 16.09 -19.23 -0.31 -7.50 16 9 O -0.30 -4.98 9.56 -47.19 -0.45 -5.43 16 10 C 0.05 0.68 5.95 36.00 0.21 0.90 16 11 C 0.50 9.78 7.91 -10.99 -0.09 9.69 16 12 O -0.53 -12.63 16.50 -14.10 -0.23 -12.86 16 13 N -0.70 -14.04 5.55 -61.48 -0.34 -14.39 16 14 C 0.22 5.44 4.50 -5.19 -0.02 5.42 16 15 C -0.55 -14.86 9.83 -34.44 -0.34 -15.20 16 16 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 18 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 19 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 23 N -0.42 -5.39 10.09 -9.50 -0.10 -5.49 16 24 C 0.12 1.19 10.92 -17.15 -0.19 1.01 16 25 H 0.23 0.25 7.80 -54.09 -0.42 -0.17 16 26 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 27 H 0.16 1.12 7.63 -52.49 -0.40 0.72 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 31 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 32 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -35.39 324.08 -5.76 -41.15 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.20 Total: 0.83 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -2.12 Total: 7.66 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.34 Total: -45.45 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.99 Total: -25.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.39 -5.76 -41.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729008942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.390 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds