Wall clock time and date at job start Tue Mar 31 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00125 * 2 1 4 4 C 1.52996 * 109.47358 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47048 * 65.00012 * 4 3 2 6 6 C 1.34778 * 119.99545 * 180.02562 * 5 4 3 7 7 S 1.71201 * 120.00260 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99994 * 179.97438 * 8 6 5 10 10 C 1.53076 * 109.43981 * 84.79590 * 9 8 6 11 11 C 1.53183 * 109.29478 * 181.23571 * 10 9 8 12 12 N 1.46930 * 108.89468 * 305.57480 * 11 10 9 13 13 C 1.36937 * 120.63259 * 233.51494 * 12 11 10 14 14 H 1.08000 * 119.99761 * 151.83401 * 13 12 11 15 15 C 1.38806 * 120.00219 * 331.83653 * 13 12 11 16 16 N 1.31624 * 120.00191 * 343.07619 * 15 13 12 17 17 Si 1.86800 * 120.00146 * 163.07294 * 15 13 12 18 18 H 1.48506 * 109.46812 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47258 * 119.99807 * 17 15 13 20 20 H 1.48499 * 109.47344 * 240.00342 * 17 15 13 21 21 C 1.46925 * 118.73328 * 53.53726 * 12 11 10 22 22 C 1.53033 * 109.45902 * 204.99610 * 9 8 6 23 23 H 1.08997 * 109.47736 * 59.99791 * 1 2 3 24 24 H 1.09005 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47252 * 299.99292 * 1 2 3 26 26 H 1.08998 * 109.46876 * 60.00303 * 3 2 1 27 27 H 1.09002 * 109.47107 * 300.00184 * 3 2 1 28 28 H 1.09000 * 109.46822 * 305.00234 * 4 3 2 29 29 H 1.09000 * 109.47239 * 185.00100 * 4 3 2 30 30 H 0.96997 * 120.00325 * 0.02562 * 5 4 3 31 31 H 0.97007 * 119.99982 * 359.97438 * 8 6 5 32 32 H 1.08994 * 109.45870 * 324.97548 * 9 8 6 33 33 H 1.09005 * 109.39190 * 61.35477 * 10 9 8 34 34 H 1.09004 * 109.62337 * 301.25270 * 10 9 8 35 35 H 1.09005 * 109.58619 * 185.72200 * 11 10 9 36 36 H 1.08998 * 109.58733 * 65.43770 * 11 10 9 37 37 H 0.96995 * 120.00379 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58688 * 66.18006 * 21 12 11 39 39 H 1.08996 * 109.58570 * 186.45714 * 21 12 11 40 40 H 1.09003 * 109.49897 * 58.68032 * 22 9 8 41 41 H 1.09000 * 109.52987 * 298.59684 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 5.2882 0.3557 -1.4762 7 16 6.4411 0.8159 -0.2973 8 7 5.6933 -0.2144 -2.6284 9 6 7.1201 -0.4408 -2.8716 10 6 7.5417 -1.7665 -2.2327 11 6 9.0404 -1.9850 -2.4624 12 7 9.3201 -1.8898 -3.9017 13 6 9.9821 -2.8968 -4.5519 14 1 9.8041 -3.0694 -5.6031 15 6 10.8819 -3.6958 -3.8601 16 7 11.3531 -3.3008 -2.6963 17 14 11.4241 -5.3318 -4.5806 18 1 10.7548 -5.5423 -5.8894 19 1 12.8964 -5.3240 -4.7737 20 1 11.0524 -6.4293 -3.6518 21 6 8.8763 -0.6933 -4.6298 22 6 7.3787 -0.4907 -4.3791 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.6886 1.8463 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8513 0.5682 0.8409 29 1 3.9785 2.1766 0.0889 30 1 3.3224 0.3041 -1.9209 31 1 5.0400 -0.4748 -3.2966 32 1 7.6971 0.3721 -2.4308 33 1 6.9810 -2.5825 -2.6886 34 1 7.3380 -1.7381 -1.1623 35 1 9.3256 -2.9724 -2.0993 36 1 9.6069 -1.2218 -1.9288 37 1 11.9822 -3.8590 -2.2130 38 1 9.4275 0.1768 -4.2733 39 1 9.0555 -0.8274 -5.6966 40 1 7.0570 0.4459 -4.8346 41 1 6.8212 -1.3186 -4.8172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730436602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:12 Heat of formation + Delta-G solvation = -9.570039 kcal Electronic energy + Delta-G solvation = -20835.902511 eV Core-core repulsion = 17684.691222 eV Total energy + Delta-G solvation = -3151.211289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -39.39267 -38.45387 -37.11376 -34.94757 -32.43255 -30.59664 -29.90481 -29.08959 -26.74612 -25.08351 -23.61169 -23.15410 -22.16191 -21.74027 -19.51824 -18.16793 -17.42979 -17.05332 -16.66719 -16.04116 -15.45961 -15.02728 -14.80268 -14.60529 -14.45206 -13.88767 -13.49932 -13.25886 -12.99976 -12.75711 -12.39259 -12.22120 -12.03323 -11.59585 -11.47355 -11.09060 -10.88106 -10.81095 -10.71981 -10.32898 -10.23839 -10.20958 -10.01014 -9.71036 -9.58114 -8.88100 -8.41604 -7.57184 -7.11558 -6.64827 -5.74838 -3.18443 1.62149 2.17352 2.73471 3.23413 3.39589 3.47108 3.49115 3.65245 4.43341 4.51915 4.63152 4.81764 4.87247 4.93983 5.20489 5.22371 5.34180 5.39998 5.43923 5.57962 5.62354 5.76461 5.96857 6.08333 6.18723 6.30525 6.44804 6.57769 6.61609 6.65941 6.76325 6.88352 6.95742 7.06249 7.40168 7.50066 7.76611 7.83544 8.48594 9.24413 9.87451 10.44188 11.33463 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.028430 B = 0.003258 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.638340 B = 8591.908775 C = 8748.074428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.045 3.955 4 C 0.131 3.869 5 N -0.690 5.690 6 C 0.562 3.438 7 S -0.647 6.647 8 N -0.675 5.675 9 C 0.148 3.852 10 C -0.143 4.143 11 C 0.177 3.823 12 N -0.593 5.593 13 C -0.256 4.256 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.898 5.898 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.150 3.850 22 C -0.140 4.140 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.396 0.604 31 H 0.391 0.609 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.026 0.974 37 H 0.254 0.746 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 8.999 1.649 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.032 4.032 4 C 0.007 3.993 5 N -0.322 5.322 6 C 0.201 3.799 7 S -0.522 6.522 8 N -0.301 5.301 9 C 0.046 3.954 10 C -0.184 4.184 11 C 0.050 3.950 12 N -0.315 5.315 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.542 5.542 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.023 3.977 22 C -0.180 4.180 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.232 0.768 31 H 0.226 0.774 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.321 9.081 2.604 23.320 hybrid contribution -1.260 -1.132 -1.514 2.272 sum -22.581 7.949 1.090 23.964 Atomic orbital electron populations 1.22772 0.80685 1.03072 1.00053 1.87965 1.20003 1.27429 1.95452 1.22918 0.93129 0.85521 1.01620 1.21695 0.91043 1.00542 0.86023 1.44851 1.04167 1.61807 1.21338 1.22262 0.87493 0.81519 0.88615 1.93504 1.47860 1.70669 1.40183 1.45613 1.11483 1.57422 1.15608 1.21629 0.76226 1.01118 0.96454 1.22550 1.01540 0.94145 1.00179 1.20735 0.87754 1.02336 0.84129 1.44138 1.65408 1.16660 1.05335 1.19184 1.17147 1.07386 0.94846 0.91697 1.25070 0.96631 1.00125 0.97721 1.70045 1.32049 1.36527 1.15558 0.86254 0.78041 0.84200 0.78429 1.20336 1.21705 1.21559 1.20802 0.89696 0.90633 0.96581 1.22390 1.01553 1.00425 0.93633 0.94041 0.89434 0.93821 0.90874 0.92643 0.88741 0.88143 0.76824 0.77390 0.87155 0.93300 0.91440 0.89277 0.95571 0.93571 0.95901 0.92282 0.92675 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.21 10.65 -35.23 -0.38 -3.59 16 3 C 0.05 0.29 6.07 37.16 0.23 0.51 16 4 C 0.13 1.19 5.51 -4.04 -0.02 1.17 16 5 N -0.69 -6.99 5.51 -62.03 -0.34 -7.33 16 6 C 0.56 7.95 7.95 -86.91 -0.69 7.26 16 7 S -0.65 -12.27 26.57 -107.50 -2.86 -15.13 16 8 N -0.67 -9.05 5.08 -55.47 -0.28 -9.33 16 9 C 0.15 2.54 2.18 -67.87 -0.15 2.39 16 10 C -0.14 -2.88 5.60 -26.60 -0.15 -3.03 16 11 C 0.18 4.35 5.30 -3.71 -0.02 4.33 16 12 N -0.59 -14.81 3.00 -172.33 -0.52 -15.33 16 13 C -0.26 -7.01 9.58 -15.06 -0.14 -7.15 16 14 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 15 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 16 N -0.90 -26.49 11.20 55.49 0.62 -25.86 16 17 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 22 C -0.14 -2.27 5.55 -26.62 -0.15 -2.42 16 23 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 1.06 7.99 -51.93 -0.41 0.64 16 29 H 0.10 0.92 7.99 -51.93 -0.42 0.51 16 30 H 0.40 3.04 8.49 -40.82 -0.35 2.70 16 31 H 0.39 4.02 8.62 -40.82 -0.35 3.67 16 32 H 0.11 2.17 6.82 -51.93 -0.35 1.81 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 35 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -33.68 342.09 -10.49 -44.17 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.77 Total: 3.10 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.09 Total: 7.39 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.52 Total: -57.86 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: -0.38 Total: -3.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 16 Polarization: -12.27 SS G_CDS: -2.86 Total: -15.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.68 -10.49 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730436602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.600 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds