Wall clock time and date at job start Tue Mar 31 2020 03:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 C 1.50701 * 109.47151 * 270.02505 * 7 6 5 9 9 O 1.20824 * 120.00100 * 359.97438 * 8 7 6 10 10 O 1.34233 * 119.99764 * 179.97438 * 8 7 6 11 11 C 1.45198 * 116.99784 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46880 * 180.02562 * 11 10 8 13 13 O 1.21288 * 120.00279 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99897 * 180.02562 * 12 11 10 15 15 C 1.37102 * 120.00379 * 179.97438 * 14 12 11 16 16 H 1.08001 * 119.99306 * 359.97438 * 15 14 12 17 17 C 1.38941 * 120.00301 * 179.97438 * 15 14 12 18 18 N 1.31416 * 120.00261 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00219 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47304 * 59.99506 * 19 17 15 21 21 H 1.48501 * 109.47501 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46685 * 299.99635 * 19 17 15 23 23 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 24 24 C 1.37947 * 120.14940 * 359.95280 * 23 6 5 25 25 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 27 27 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 28 28 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 29 29 H 1.08998 * 109.47263 * 299.99867 * 11 10 8 30 30 H 1.08999 * 109.46968 * 59.99953 * 11 10 8 31 31 H 0.97005 * 119.99979 * 359.97438 * 14 12 11 32 32 H 0.96998 * 120.00005 * 180.02562 * 18 17 15 33 33 H 1.07993 * 119.92703 * 179.97438 * 23 6 5 34 34 H 1.08003 * 120.07687 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3465 1.4032 -0.2326 9 8 6.5613 2.3090 -0.3836 10 8 8.6662 1.6454 -0.2722 11 6 9.0778 3.0191 -0.4998 12 6 10.5827 3.0970 -0.5128 13 8 11.2434 2.0937 -0.3461 14 7 11.1944 4.2819 -0.7086 15 6 12.5636 4.3529 -0.7199 16 1 13.1518 3.4594 -0.5714 17 6 13.1942 5.5743 -0.9223 18 7 12.4784 6.6614 -1.1034 19 14 15.0597 5.6713 -0.9369 20 1 15.5917 4.8085 -2.0222 21 1 15.4806 7.0761 -1.1706 22 1 15.5897 5.2061 0.3700 23 6 4.6489 -0.1954 -1.1838 24 6 3.2694 -0.1972 -1.1910 25 1 2.7328 0.3633 2.1140 26 1 5.1923 0.3522 2.1044 27 1 7.2076 -0.3594 0.9625 28 1 7.2078 -0.6511 -0.7934 29 1 8.6884 3.3609 -1.4588 30 1 8.6876 3.6521 0.2972 31 1 10.6660 5.0844 -0.8416 32 1 12.9187 7.5140 -1.2451 33 1 5.1926 -0.3482 -2.1042 34 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:49 Heat of formation + Delta-G solvation = -69.609769 kcal Electronic energy + Delta-G solvation = -20489.663244 eV Core-core repulsion = 16966.852729 eV Total energy + Delta-G solvation = -3522.810515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65450 -39.63656 -38.16284 -36.86966 -36.12091 -34.03039 -33.42312 -31.49781 -31.41198 -29.38879 -27.87904 -24.71363 -23.36207 -23.20209 -20.81137 -19.61295 -19.30367 -18.10819 -17.65084 -16.68219 -16.59872 -15.82139 -15.64872 -15.49557 -14.89817 -14.56272 -14.31681 -14.23850 -13.96366 -13.90750 -13.32123 -13.24503 -13.03306 -12.64243 -12.47087 -12.07356 -12.05163 -11.87512 -11.64070 -11.43915 -11.13411 -10.52314 -10.50895 -10.46078 -10.31254 -9.62205 -9.40894 -9.18807 -8.55462 -8.11108 -6.52384 -3.94703 0.32909 0.96479 2.23644 2.32482 2.41586 2.83965 3.13501 3.21296 3.25760 3.50960 3.53952 3.70779 4.09714 4.21056 4.37383 4.48105 4.65141 4.86537 4.90594 5.05579 5.12330 5.18481 5.19463 5.36340 5.51904 5.57379 5.66002 5.77613 5.88812 6.02259 6.09305 6.38647 6.58592 7.13259 7.45148 7.78159 7.92661 8.45567 9.04355 9.36454 9.86185 10.64651 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.049698 B = 0.002353 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.271951 B =11894.374997 C =12144.951436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.257 3.743 3 C -0.032 4.032 4 C -0.068 4.068 5 C -0.103 4.103 6 C -0.042 4.042 7 C -0.080 4.080 8 C 0.458 3.542 9 O -0.506 6.506 10 O -0.325 6.325 11 C 0.062 3.938 12 C 0.437 3.563 13 O -0.577 6.577 14 N -0.552 5.552 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.103 4.103 24 C -0.068 4.068 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.136 0.864 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 -11.866 1.969 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.058 4.058 3 C -0.035 4.035 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.042 4.042 7 C -0.117 4.117 8 C 0.300 3.700 9 O -0.394 6.394 10 O -0.240 6.240 11 C -0.016 4.016 12 C 0.222 3.778 13 O -0.461 6.461 14 N -0.189 5.189 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.121 4.121 24 C -0.088 4.088 25 H 0.152 0.848 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.223 -12.031 1.996 20.296 hybrid contribution 0.942 0.925 -0.154 1.330 sum -15.281 -11.106 1.842 18.980 Atomic orbital electron populations 1.81259 1.12116 1.08933 1.07355 1.25744 0.92689 0.93619 0.93749 1.16016 0.84222 1.07741 0.95523 1.21133 0.94111 0.96826 0.96760 1.20999 0.93625 0.99208 0.98267 1.19600 0.93895 0.96941 0.93812 1.20365 0.91693 0.92404 1.07277 1.23451 0.81179 0.91718 0.73603 1.90694 1.56886 1.46595 1.45273 1.86542 1.24232 1.31718 1.81498 1.22750 0.96130 0.79837 1.02876 1.19324 0.87285 0.85166 0.86041 1.90560 1.65753 1.35017 1.54777 1.41709 1.07655 1.07373 1.62190 1.19675 0.80902 0.95760 1.46919 0.87644 1.25319 1.00956 0.94699 0.96783 1.69605 1.36651 0.99370 1.48101 0.85851 0.81654 0.77191 0.79145 1.19745 1.20875 1.19739 1.20996 0.93626 0.99535 0.97937 1.21132 0.94109 0.96932 0.96665 0.84802 0.84649 0.86061 0.86063 0.89527 0.89519 0.77148 0.91546 0.84650 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.02 18.54 41.83 0.78 -4.25 16 2 C 0.26 2.47 15.33 -22.47 -0.34 2.12 16 3 C -0.03 -0.25 5.73 -106.93 -0.61 -0.86 16 4 C -0.07 -0.48 9.76 -39.17 -0.38 -0.86 16 5 C -0.10 -0.75 9.68 -39.64 -0.38 -1.13 16 6 C -0.04 -0.33 4.38 -104.53 -0.46 -0.79 16 7 C -0.08 -0.66 5.93 -29.04 -0.17 -0.83 16 8 C 0.46 6.09 7.95 36.01 0.29 6.38 16 9 O -0.51 -7.84 15.78 -18.75 -0.30 -8.14 16 10 O -0.33 -5.47 9.75 -45.91 -0.45 -5.91 16 11 C 0.06 1.10 5.94 36.00 0.21 1.32 16 12 C 0.44 10.17 7.86 -10.99 -0.09 10.08 16 13 O -0.58 -15.53 16.08 -14.11 -0.23 -15.75 16 14 N -0.55 -13.60 5.29 -10.97 -0.06 -13.66 16 15 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -23.67 13.05 55.50 0.72 -22.94 16 19 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C -0.10 -0.75 9.68 -39.64 -0.38 -1.13 16 24 C -0.07 -0.48 9.76 -39.17 -0.38 -0.86 16 25 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 26 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.12 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.12 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 30 H 0.09 1.42 8.13 -51.93 -0.42 0.99 16 31 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -33.64 324.58 -5.82 -39.46 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.21 Total: 5.36 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -2.95 Total: 5.64 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 1.44 Total: -40.85 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.97 Total: -29.80 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.64 -5.82 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.153 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds