Wall clock time and date at job start Tue Mar 31 2020 03:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48497 * 109.47309 * 239.99996 * 3 2 1 5 5 H 1.48501 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47291 * 119.99821 * 3 2 1 7 7 C 1.38952 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00077 * 201.12719 * 7 2 1 9 9 N 1.37098 * 119.99979 * 21.12920 * 7 2 1 10 10 C 1.46503 * 119.99916 * 16.26428 * 9 7 2 11 11 C 1.50699 * 109.47169 * 264.14415 * 10 9 7 12 12 O 1.20828 * 119.99466 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00376 * 196.25881 * 9 7 2 15 15 O 1.21291 * 119.99789 * 0.02562 * 14 9 7 16 16 C 1.50693 * 120.00156 * 180.02562 * 14 9 7 17 17 N 1.46499 * 109.47332 * 180.02562 * 16 14 9 18 18 C 1.44543 * 120.61403 * 270.00677 * 17 16 14 19 19 C 1.53420 * 111.71999 * 180.02562 * 18 17 16 20 20 S 1.82070 * 103.93569 * 359.77923 * 19 18 17 21 21 C 1.33005 * 120.61696 * 90.01844 * 17 16 14 22 22 O 1.21612 * 125.19768 * 359.95452 * 21 17 16 23 23 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46836 * 24.13862 * 10 9 7 25 25 H 1.08997 * 109.47345 * 144.13891 * 10 9 7 26 26 H 0.96701 * 116.99826 * 179.97438 * 13 11 10 27 27 H 1.08995 * 109.47155 * 60.00231 * 16 14 9 28 28 H 1.09000 * 109.46984 * 300.00415 * 16 14 9 29 29 H 1.09004 * 109.03595 * 300.61207 * 18 17 16 30 30 H 1.08997 * 109.04615 * 59.41967 * 18 17 16 31 31 H 1.09000 * 110.53736 * 118.60819 * 19 18 17 32 32 H 1.09007 * 110.53535 * 241.24251 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0344 -1.2346 0.3377 9 7 1.3925 -2.3509 -0.4269 10 6 0.1547 -2.2708 -1.2066 11 6 -1.0291 -2.4275 -0.2873 12 8 -0.8565 -2.5899 0.8975 13 8 -2.2751 -2.3866 -0.7847 14 6 1.9252 -3.5528 -0.1300 15 8 2.9498 -3.6192 0.5158 16 6 1.2480 -4.8142 -0.6004 17 7 2.0170 -5.9777 -0.1521 18 6 3.0686 -6.5275 -0.9774 19 6 3.7370 -7.7384 -0.3135 20 16 2.8553 -7.9124 1.2700 21 6 1.7604 -6.5479 1.0218 22 8 0.9060 -6.1829 1.8065 23 1 -0.4850 0.8401 -0.0004 24 1 0.1017 -1.3032 -1.7056 25 1 0.1431 -3.0654 -1.9526 26 1 -3.0023 -2.4922 -0.1561 27 1 1.1925 -4.8125 -1.6890 28 1 0.2413 -4.8625 -0.1853 29 1 2.6458 -6.8349 -1.9340 30 1 3.8207 -5.7587 -1.1542 31 1 3.6080 -8.6303 -0.9267 32 1 4.7956 -7.5440 -0.1410 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:32 Heat of formation + Delta-G solvation = -127.307286 kcal Electronic energy + Delta-G solvation = -21630.165654 eV Core-core repulsion = 18104.464044 eV Total energy + Delta-G solvation = -3525.701610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11223 -39.23335 -37.96108 -36.42700 -35.26059 -34.53814 -32.04488 -31.26555 -28.18974 -27.61921 -25.03881 -24.28275 -21.41102 -21.01017 -19.05805 -18.05455 -17.27683 -17.12622 -16.81610 -16.29128 -15.78647 -15.71548 -14.65270 -14.60860 -14.51255 -14.10868 -13.97860 -13.82327 -13.71737 -12.89691 -12.72427 -12.20138 -12.10319 -11.77800 -11.68834 -11.45837 -11.00479 -10.89747 -10.53741 -10.41700 -10.39826 -9.70595 -9.64941 -9.35115 -9.11477 -8.53524 -8.08649 -8.01289 -6.52731 -3.97942 1.25256 1.88409 2.50257 3.09793 3.17642 3.20269 3.25161 3.37367 3.53854 3.98904 4.16399 4.20451 4.56320 4.66129 4.93983 5.18975 5.25105 5.27760 5.41181 5.57123 5.65876 5.75120 6.14492 6.35331 6.49263 7.06585 7.44399 7.48533 7.78550 7.90250 8.26164 8.96236 8.99143 9.19298 9.69122 10.55701 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.005642 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.216917 B = 4961.662687 C = 5661.883490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.307 4.307 8 H 0.108 0.892 9 N -0.426 5.426 10 C 0.143 3.857 11 C 0.483 3.517 12 O -0.496 6.496 13 O -0.535 6.535 14 C 0.443 3.557 15 O -0.565 6.565 16 C 0.104 3.896 17 N -0.587 5.587 18 C 0.102 3.898 19 C -0.094 4.094 20 S -0.195 6.195 21 C 0.553 3.447 22 O -0.475 6.475 23 H 0.273 0.727 24 H 0.133 0.867 25 H 0.076 0.924 26 H 0.394 0.606 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -10.456 -9.436 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.126 0.874 9 N -0.147 5.147 10 C 0.016 3.984 11 C 0.322 3.678 12 O -0.380 6.380 13 O -0.346 6.346 14 C 0.230 3.770 15 O -0.447 6.447 16 C -0.026 4.026 17 N -0.323 5.323 18 C -0.023 4.023 19 C -0.243 4.243 20 S 0.030 5.970 21 C 0.231 3.769 22 O -0.351 6.351 23 H 0.083 0.917 24 H 0.150 0.850 25 H 0.094 0.906 26 H 0.250 0.750 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.731 -10.937 -7.683 13.478 hybrid contribution -0.487 1.800 -0.366 1.901 sum 1.244 -9.136 -8.049 12.240 Atomic orbital electron populations 1.69785 1.06068 1.28200 1.47898 1.25261 0.95346 1.00073 0.96572 0.85892 0.78963 0.80104 0.79171 1.19760 1.20922 1.19783 1.19676 0.97660 0.83073 1.42978 0.87414 1.43456 1.19515 1.05248 1.46459 1.20741 0.81422 1.04998 0.91216 1.23802 0.83262 0.71382 0.89308 1.90681 1.85506 1.44240 1.17580 1.84498 1.17386 1.86404 1.46315 1.20247 0.88125 0.84293 0.84368 1.90548 1.25923 1.86061 1.42151 1.21483 0.96181 0.84503 1.00414 1.47305 1.36059 1.30258 1.18640 1.21340 0.91102 0.95928 0.93906 1.24124 1.03575 1.01205 0.95372 1.87239 1.42269 1.40682 1.26853 1.21498 0.86562 0.85848 0.82984 1.90900 1.34228 1.64302 1.45631 0.91662 0.84980 0.90598 0.74982 0.88192 0.87864 0.89449 0.88783 0.86715 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.76 9.25 55.50 0.51 -22.24 16 2 C 0.03 0.78 4.89 -17.47 -0.09 0.70 16 3 Si 0.93 20.17 29.60 -169.99 -5.03 15.14 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.31 -8.28 9.35 -14.93 -0.14 -8.42 16 8 H 0.11 3.06 7.37 -52.48 -0.39 2.67 16 9 N -0.43 -10.44 2.18 -116.10 -0.25 -10.69 16 10 C 0.14 2.95 4.97 -5.19 -0.03 2.92 16 11 C 0.48 10.60 5.87 36.00 0.21 10.82 16 12 O -0.50 -13.26 16.81 -18.75 -0.32 -13.57 16 13 O -0.53 -9.43 13.42 -39.24 -0.53 -9.95 16 14 C 0.44 10.53 7.49 -10.99 -0.08 10.44 16 15 O -0.56 -15.42 16.07 5.55 0.09 -15.33 16 16 C 0.10 1.89 4.65 -5.20 -0.02 1.86 16 17 N -0.59 -9.98 2.27 -180.66 -0.41 -10.39 16 18 C 0.10 1.17 6.80 -4.87 -0.03 1.14 16 19 C -0.09 -0.91 7.42 37.38 0.28 -0.63 16 20 S -0.20 -2.92 23.25 -107.50 -2.50 -5.42 16 21 C 0.55 10.87 8.27 53.27 0.44 11.31 16 22 O -0.48 -11.45 17.27 5.27 0.09 -11.36 16 23 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.13 2.82 6.34 -51.93 -0.33 2.49 16 25 H 0.08 1.18 6.69 -51.93 -0.35 0.84 16 26 H 0.39 5.45 9.10 45.56 0.41 5.86 16 27 H 0.10 1.32 7.35 -51.93 -0.38 0.94 16 28 H 0.10 2.03 7.03 -51.93 -0.37 1.66 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -37.53 295.91 -5.56 -43.10 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -2.22 Total: 6.13 kcal Atomic # 6 Polarization: 29.61 SS G_CDS: 0.54 Total: 30.14 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.15 Total: -43.32 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.66 Total: -50.22 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.50 Total: -5.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -37.53 -5.56 -43.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.211 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds