Wall clock time and date at job start Tue Mar 31 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00269 * 2 1 4 4 H 1.48497 * 109.47309 * 239.99996 * 3 2 1 5 5 H 1.48501 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47291 * 119.99821 * 3 2 1 7 7 C 1.38952 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00077 * 201.12719 * 7 2 1 9 9 N 1.37098 * 119.99979 * 21.12920 * 7 2 1 10 10 C 1.46503 * 119.99916 * 16.26428 * 9 7 2 11 11 C 1.50699 * 109.47169 * 264.14415 * 10 9 7 12 12 O 1.20828 * 119.99466 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00376 * 196.25881 * 9 7 2 15 15 O 1.21291 * 119.99789 * 0.02562 * 14 9 7 16 16 C 1.50693 * 120.00156 * 180.02562 * 14 9 7 17 17 N 1.46499 * 109.47332 * 180.02562 * 16 14 9 18 18 C 1.44543 * 120.61403 * 270.00677 * 17 16 14 19 19 C 1.53420 * 111.71999 * 180.02562 * 18 17 16 20 20 S 1.82070 * 103.93569 * 359.77923 * 19 18 17 21 21 C 1.33005 * 120.61696 * 90.01844 * 17 16 14 22 22 O 1.21612 * 125.19768 * 359.95452 * 21 17 16 23 23 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46836 * 24.13862 * 10 9 7 25 25 H 1.08997 * 109.47345 * 144.13891 * 10 9 7 26 26 H 0.96701 * 116.99826 * 179.97438 * 13 11 10 27 27 H 1.08995 * 109.47155 * 60.00231 * 16 14 9 28 28 H 1.09000 * 109.46984 * 300.00415 * 16 14 9 29 29 H 1.09004 * 109.03595 * 300.61207 * 18 17 16 30 30 H 1.08997 * 109.04615 * 59.41967 * 18 17 16 31 31 H 1.09000 * 110.53736 * 118.60819 * 19 18 17 32 32 H 1.09007 * 110.53535 * 241.24251 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0344 -1.2346 0.3377 9 7 1.3925 -2.3509 -0.4269 10 6 0.1547 -2.2708 -1.2066 11 6 -1.0291 -2.4275 -0.2873 12 8 -0.8565 -2.5899 0.8975 13 8 -2.2751 -2.3866 -0.7847 14 6 1.9252 -3.5528 -0.1300 15 8 2.9498 -3.6192 0.5158 16 6 1.2480 -4.8142 -0.6004 17 7 2.0170 -5.9777 -0.1521 18 6 3.0686 -6.5275 -0.9774 19 6 3.7370 -7.7384 -0.3135 20 16 2.8553 -7.9124 1.2700 21 6 1.7604 -6.5479 1.0218 22 8 0.9060 -6.1829 1.8065 23 1 -0.4850 0.8401 -0.0004 24 1 0.1017 -1.3032 -1.7056 25 1 0.1431 -3.0654 -1.9526 26 1 -3.0023 -2.4922 -0.1561 27 1 1.1925 -4.8125 -1.6890 28 1 0.2413 -4.8625 -0.1853 29 1 2.6458 -6.8349 -1.9340 30 1 3.8207 -5.7587 -1.1542 31 1 3.6080 -8.6303 -0.9267 32 1 4.7956 -7.5440 -0.1410 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:31 Heat of formation + Delta-G solvation = -156.994831 kcal Electronic energy + Delta-G solvation = -21631.453003 eV Core-core repulsion = 18104.464044 eV Total energy + Delta-G solvation = -3526.988959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.64484 -40.84463 -39.70302 -37.80867 -36.97788 -36.37156 -33.90243 -32.47387 -29.77404 -29.21081 -26.71227 -25.53865 -22.99305 -22.49470 -20.70494 -19.30484 -19.07954 -18.77035 -18.46841 -17.73410 -17.44995 -17.17073 -16.31105 -16.22358 -16.03153 -15.62443 -15.39602 -15.25029 -15.18308 -14.44036 -13.90468 -13.75208 -13.55049 -13.42323 -13.08104 -13.03437 -12.68517 -12.42860 -12.19270 -12.14348 -11.96509 -11.56439 -11.10400 -10.99235 -10.93112 -10.11894 -9.92684 -9.25482 -8.46579 -5.99654 -0.00746 0.90663 1.06860 1.35159 1.41810 1.52593 1.65496 1.79776 2.01576 2.26078 2.51617 2.90722 3.05473 3.31848 3.71049 3.91619 3.99023 4.18401 4.28967 4.47138 4.58866 4.73128 4.74447 4.87120 4.93663 5.42271 5.81830 5.93560 5.94420 6.31692 6.48416 7.05082 7.24253 7.41909 7.83266 8.59152 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.005642 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.216917 B = 4961.662687 C = 5661.883490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.000 4.000 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.439 5.439 10 C 0.139 3.861 11 C 0.490 3.510 12 O -0.553 6.553 13 O -0.517 6.517 14 C 0.432 3.568 15 O -0.614 6.614 16 C 0.112 3.888 17 N -0.586 5.586 18 C 0.088 3.912 19 C -0.076 4.076 20 S -0.201 6.201 21 C 0.528 3.472 22 O -0.545 6.545 23 H 0.276 0.724 24 H 0.126 0.874 25 H 0.134 0.866 26 H 0.413 0.587 27 H 0.160 0.840 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -11.396 -12.468 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.201 4.201 3 Si 0.817 3.183 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.158 5.158 10 C 0.014 3.986 11 C 0.332 3.668 12 O -0.442 6.442 13 O -0.329 6.329 14 C 0.221 3.779 15 O -0.500 6.500 16 C -0.017 4.017 17 N -0.320 5.320 18 C -0.034 4.034 19 C -0.224 4.224 20 S 0.025 5.975 21 C 0.208 3.792 22 O -0.426 6.426 23 H 0.086 0.914 24 H 0.144 0.856 25 H 0.151 0.849 26 H 0.272 0.728 27 H 0.178 0.822 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.107 0.893 31 H 0.180 0.820 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.104 -11.903 -10.802 16.211 hybrid contribution -0.595 2.043 0.535 2.194 sum 1.509 -9.860 -10.267 14.315 Atomic orbital electron populations 1.69875 1.06845 1.28934 1.47446 1.25989 0.96147 1.02451 0.95555 0.84995 0.77863 0.76411 0.78989 1.17998 1.19816 1.21294 1.19583 0.97203 0.85094 1.45130 0.90362 1.43621 1.20584 1.04942 1.46681 1.20997 0.79477 1.06830 0.91286 1.24038 0.84544 0.69703 0.88521 1.90675 1.86473 1.47073 1.20011 1.84432 1.16685 1.85440 1.46301 1.21246 0.87502 0.85782 0.83413 1.90500 1.28186 1.87067 1.44225 1.21418 0.94630 0.82208 1.03494 1.47594 1.36641 1.29284 1.18435 1.21826 0.90157 0.96306 0.95137 1.24514 1.03423 1.02408 0.92056 1.87184 1.41517 1.37646 1.31163 1.22292 0.86714 0.87115 0.83116 1.90846 1.37097 1.66964 1.47716 0.91427 0.85583 0.84891 0.72811 0.82221 0.89512 0.84310 0.89314 0.81970 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.13 9.25 21.66 0.20 -45.93 16 2 C 0.00 0.02 4.89 84.93 0.42 0.43 16 3 Si 0.99 41.53 29.60 68.60 2.03 43.56 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.34 -19.03 9.35 84.04 0.79 -18.25 16 8 H 0.08 4.69 7.37 -2.91 -0.02 4.67 16 9 N -0.44 -21.69 2.18 -639.60 -1.39 -23.08 16 10 C 0.14 5.58 4.97 85.63 0.43 6.00 16 11 C 0.49 21.24 5.87 71.24 0.42 21.66 16 12 O -0.55 -30.31 16.81 21.96 0.37 -29.94 16 13 O -0.52 -17.28 13.42 -51.34 -0.69 -17.97 16 14 C 0.43 20.78 7.49 87.65 0.66 21.44 16 15 O -0.61 -34.78 16.07 -3.06 -0.05 -34.83 16 16 C 0.11 3.93 4.65 85.63 0.40 4.33 16 17 N -0.59 -19.09 2.27 -844.72 -1.91 -21.00 16 18 C 0.09 1.70 6.80 86.89 0.59 2.29 16 19 C -0.08 -1.15 7.42 72.12 0.54 -0.61 16 20 S -0.20 -5.77 23.25 -56.49 -1.31 -7.09 16 21 C 0.53 21.02 8.27 130.07 1.08 22.10 16 22 O -0.54 -27.76 17.27 -4.07 -0.07 -27.83 16 23 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 24 H 0.13 5.22 6.34 -2.39 -0.02 5.21 16 25 H 0.13 3.67 6.69 -2.39 -0.02 3.65 16 26 H 0.41 10.75 9.10 -74.06 -0.67 10.08 16 27 H 0.16 3.52 7.35 -2.39 -0.02 3.51 16 28 H 0.09 3.40 7.03 -2.39 -0.02 3.38 16 29 H 0.14 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -89.95 295.91 2.98 -86.97 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.51 Total: 17.75 kcal Atomic # 6 Polarization: 54.09 SS G_CDS: 5.30 Total: 59.39 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.11 Total: -90.02 kcal Atomic # 8 Polarization: -110.13 SS G_CDS: -0.44 Total: -110.57 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -1.31 Total: -7.09 kcal Total: -89.95 2.98 -86.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.027 kcal (2) G-P(sol) polarization free energy of solvation -89.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds