Wall clock time and date at job start Tue Mar 31 2020 03:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50701 * 109.46735 * 183.24238 * 3 2 1 5 5 C 1.38400 * 119.92701 * 269.72547 * 4 3 2 6 6 C 1.38354 * 120.30514 * 179.76762 * 5 4 3 7 7 C 1.37952 * 120.15331 * 0.51108 * 6 5 4 8 8 C 1.39627 * 119.84359 * 359.74553 * 7 6 5 9 9 C 1.47734 * 120.14972 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99812 * 134.51611 * 9 8 7 11 11 N 1.34769 * 119.99858 * 314.51367 * 9 8 7 12 12 C 1.36879 * 120.00017 * 185.33336 * 11 9 8 13 13 H 1.07997 * 119.99762 * 322.76152 * 12 11 9 14 14 C 1.39050 * 120.00024 * 142.75847 * 12 11 9 15 15 N 1.31357 * 119.99920 * 160.34361 * 14 12 11 16 16 Si 1.86799 * 119.99686 * 340.34525 * 14 12 11 17 17 H 1.48504 * 109.47027 * 95.03297 * 16 14 12 18 18 H 1.48508 * 109.46780 * 215.02722 * 16 14 12 19 19 H 1.48494 * 109.47541 * 335.02788 * 16 14 12 20 20 C 1.46497 * 120.00299 * 5.33947 * 11 9 8 21 21 C 1.50694 * 109.47541 * 95.70175 * 20 11 9 22 22 O 1.20826 * 119.99927 * 0.02562 * 21 20 11 23 23 O 1.34230 * 120.00259 * 180.02562 * 21 20 11 24 24 C 1.37915 * 119.92256 * 90.00235 * 4 3 2 25 25 H 1.08995 * 109.47403 * 303.24644 * 3 2 1 26 26 H 1.09005 * 109.47159 * 63.24910 * 3 2 1 27 27 H 1.07999 * 119.84224 * 0.02562 * 5 4 3 28 28 H 1.07996 * 119.92224 * 180.25583 * 6 5 4 29 29 H 1.07996 * 120.08205 * 179.76949 * 7 6 5 30 30 H 0.96996 * 120.00195 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.46986 * 215.70492 * 20 11 9 32 32 H 1.09001 * 109.47160 * 335.69854 * 20 11 9 33 33 H 0.96700 * 117.00448 * 179.97438 * 23 21 20 34 34 H 1.07997 * 120.07832 * 359.95543 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1096 1.4195 0.0804 5 6 3.3448 2.1355 -1.0804 6 6 3.8008 3.4401 -1.0157 7 6 4.0341 4.0327 0.2080 8 6 3.8040 3.3144 1.3830 9 6 4.0511 3.9426 2.6971 10 8 3.2323 3.8290 3.5888 11 7 5.1841 4.6414 2.9075 12 6 5.4649 5.1306 4.1547 13 1 4.6686 5.5111 4.7773 14 6 6.7752 5.1376 4.6201 15 7 7.1157 5.9290 5.6116 16 14 8.0510 4.0217 3.8350 17 1 8.7929 4.7749 2.7921 18 1 9.0010 3.5485 4.8739 19 1 7.3737 2.8546 3.2152 20 6 6.1152 4.8776 1.8015 21 6 5.8396 6.2281 1.1924 22 8 4.9563 6.9224 1.6369 23 8 6.5754 6.6598 0.1560 24 6 3.3386 1.9995 1.3104 25 1 2.9716 -0.5626 0.8594 26 1 2.9715 -0.4618 -0.9177 27 1 3.1676 1.6750 -2.0411 28 1 3.9783 3.9945 -1.9254 29 1 4.3936 5.0499 0.2571 30 1 8.0296 5.9336 5.9365 31 1 7.1386 4.8498 2.1758 32 1 5.9842 4.1041 1.0447 33 1 6.3611 7.5324 -0.2013 34 1 3.1583 1.4385 2.2155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739091758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:40 Heat of formation + Delta-G solvation = -42.616174 kcal Electronic energy + Delta-G solvation = -22483.821475 eV Core-core repulsion = 18962.181490 eV Total energy + Delta-G solvation = -3521.639985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.53175 -39.42169 -38.15898 -36.60386 -35.82632 -34.94110 -33.21778 -32.19261 -30.95800 -28.47626 -27.78586 -25.61610 -22.95645 -22.07209 -21.82203 -19.50264 -17.92246 -17.73375 -17.45240 -16.79126 -16.59972 -16.14032 -15.65055 -15.46720 -15.06113 -14.67678 -14.12163 -13.97288 -13.64315 -13.48402 -13.14585 -12.94774 -12.72409 -12.48871 -12.35047 -12.24616 -12.07823 -11.80588 -11.40759 -11.22488 -11.09217 -10.98428 -10.63711 -10.21180 -10.04557 -9.35033 -8.93653 -8.87994 -8.68916 -8.07589 -6.54472 -4.12957 1.05410 1.29202 2.55651 2.64880 2.67492 2.86365 3.02282 3.08336 3.12498 3.46435 3.78691 3.94736 4.04820 4.23710 4.56279 4.68050 4.86293 4.96780 5.05140 5.15389 5.25052 5.28310 5.35797 5.50298 5.55637 5.68677 5.86202 5.98203 6.33715 6.37887 6.49086 6.79522 6.85960 7.31355 7.44717 8.06673 8.22972 8.31577 8.74171 9.08864 9.46916 10.56811 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.005635 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.627190 B = 4967.622771 C = 5551.864613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.210 3.790 3 C 0.020 3.980 4 C -0.102 4.102 5 C -0.100 4.100 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.102 4.102 9 C 0.511 3.489 10 O -0.539 6.539 11 N -0.438 5.438 12 C -0.312 4.312 13 H 0.113 0.887 14 C 0.060 3.940 15 N -0.851 5.851 16 Si 0.861 3.139 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.256 1.256 20 C 0.090 3.910 21 C 0.454 3.546 22 O -0.483 6.483 23 O -0.525 6.525 24 C -0.061 4.061 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.277 0.723 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.402 0.598 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -8.130 -16.121 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.108 4.108 3 C -0.019 4.019 4 C -0.103 4.103 5 C -0.118 4.118 6 C -0.137 4.137 7 C -0.121 4.121 8 C -0.106 4.106 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.159 5.159 12 C -0.439 4.439 13 H 0.131 0.869 14 C -0.147 4.147 15 N -0.486 5.486 16 Si 0.688 3.312 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.180 1.180 20 C -0.035 4.035 21 C 0.294 3.706 22 O -0.368 6.368 23 O -0.337 6.337 24 C -0.080 4.080 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.261 0.739 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.089 -8.296 -15.163 17.285 hybrid contribution 1.269 0.433 -0.546 1.448 sum 1.358 -7.864 -15.710 17.620 Atomic orbital electron populations 1.81222 1.12998 1.08221 1.08709 1.29045 0.95053 0.93339 0.93354 1.18144 0.81765 0.95417 1.06617 1.19305 1.02617 0.94825 0.93580 1.21090 0.98721 0.94455 0.97569 1.21029 1.00073 0.95212 0.97422 1.21595 0.98637 0.99745 0.92097 1.20357 1.00526 0.95247 0.94432 1.18083 0.84055 0.80956 0.86839 1.90698 1.44178 1.62127 1.44944 1.43251 1.18897 1.46479 1.07319 1.19098 0.95495 1.38953 0.90308 0.86924 1.25392 0.97374 0.95849 0.96133 1.69697 1.19671 1.32861 1.26322 0.87170 0.81892 0.82720 0.79428 1.19564 1.20404 1.18000 1.21761 0.97905 0.91490 0.92378 1.24379 0.79098 0.90085 0.77085 1.90761 1.30817 1.56233 1.58963 1.84572 1.61120 1.40413 1.47621 1.21080 0.95721 0.93744 0.97463 0.86143 0.86274 0.85524 0.85398 0.86133 0.91188 0.87867 0.86667 0.73930 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.26 18.54 42.15 0.78 -5.48 16 2 C 0.21 2.30 15.41 -20.76 -0.32 1.98 16 3 C 0.02 0.14 5.83 -30.67 -0.18 -0.04 16 4 C -0.10 -1.09 5.08 -104.68 -0.53 -1.62 16 5 C -0.10 -0.98 9.69 -39.48 -0.38 -1.36 16 6 C -0.12 -1.36 10.03 -39.64 -0.40 -1.76 16 7 C -0.10 -1.55 7.45 -39.17 -0.29 -1.84 16 8 C -0.10 -1.82 5.06 -104.96 -0.53 -2.36 16 9 C 0.51 11.96 7.22 -12.38 -0.09 11.87 16 10 O -0.54 -14.66 16.84 5.28 0.09 -14.57 16 11 N -0.44 -10.51 1.73 -117.21 -0.20 -10.71 16 12 C -0.31 -8.70 9.24 -15.00 -0.14 -8.83 16 13 H 0.11 3.60 7.85 -52.49 -0.41 3.19 16 14 C 0.06 1.60 5.37 -17.45 -0.09 1.50 16 15 N -0.85 -23.92 13.95 55.50 0.77 -23.15 16 16 Si 0.86 18.77 24.85 -169.99 -4.22 14.54 16 17 H -0.27 -5.40 6.72 56.52 0.38 -5.02 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 20 C 0.09 1.78 4.47 -5.20 -0.02 1.75 16 21 C 0.45 8.53 5.93 36.00 0.21 8.74 16 22 O -0.48 -10.89 16.88 -18.75 -0.32 -11.21 16 23 O -0.53 -7.27 13.42 -39.26 -0.53 -7.80 16 24 C -0.06 -0.89 9.34 -39.17 -0.37 -1.26 16 25 H 0.12 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.12 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.12 1.94 4.31 -52.49 -0.23 1.71 16 30 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.10 2.08 2.76 -51.93 -0.14 1.94 16 32 H 0.12 1.86 5.26 -51.93 -0.27 1.59 16 33 H 0.40 3.70 9.10 45.56 0.41 4.12 16 34 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -36.35 305.22 -4.06 -40.42 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -1.90 Total: 6.57 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -3.13 Total: 6.79 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 1.35 Total: -39.33 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.75 Total: -33.58 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.22 Total: 14.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.35 -4.06 -40.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.200 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds