Wall clock time and date at job start Tue Mar 31 2020 03:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50701 * 109.46735 * 183.24238 * 3 2 1 5 5 C 1.38400 * 119.92701 * 269.72547 * 4 3 2 6 6 C 1.38354 * 120.30514 * 179.76762 * 5 4 3 7 7 C 1.37952 * 120.15331 * 0.51108 * 6 5 4 8 8 C 1.39627 * 119.84359 * 359.74553 * 7 6 5 9 9 C 1.47734 * 120.14972 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99812 * 134.51611 * 9 8 7 11 11 N 1.34769 * 119.99858 * 314.51367 * 9 8 7 12 12 C 1.36879 * 120.00017 * 185.33336 * 11 9 8 13 13 H 1.07997 * 119.99762 * 322.76152 * 12 11 9 14 14 C 1.39050 * 120.00024 * 142.75847 * 12 11 9 15 15 N 1.31357 * 119.99920 * 160.34361 * 14 12 11 16 16 Si 1.86799 * 119.99686 * 340.34525 * 14 12 11 17 17 H 1.48504 * 109.47027 * 95.03297 * 16 14 12 18 18 H 1.48508 * 109.46780 * 215.02722 * 16 14 12 19 19 H 1.48494 * 109.47541 * 335.02788 * 16 14 12 20 20 C 1.46497 * 120.00299 * 5.33947 * 11 9 8 21 21 C 1.50694 * 109.47541 * 95.70175 * 20 11 9 22 22 O 1.20826 * 119.99927 * 0.02562 * 21 20 11 23 23 O 1.34230 * 120.00259 * 180.02562 * 21 20 11 24 24 C 1.37915 * 119.92256 * 90.00235 * 4 3 2 25 25 H 1.08995 * 109.47403 * 303.24644 * 3 2 1 26 26 H 1.09005 * 109.47159 * 63.24910 * 3 2 1 27 27 H 1.07999 * 119.84224 * 0.02562 * 5 4 3 28 28 H 1.07996 * 119.92224 * 180.25583 * 6 5 4 29 29 H 1.07996 * 120.08205 * 179.76949 * 7 6 5 30 30 H 0.96996 * 120.00195 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.46986 * 215.70492 * 20 11 9 32 32 H 1.09001 * 109.47160 * 335.69854 * 20 11 9 33 33 H 0.96700 * 117.00448 * 179.97438 * 23 21 20 34 34 H 1.07997 * 120.07832 * 359.95543 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1096 1.4195 0.0804 5 6 3.3448 2.1355 -1.0804 6 6 3.8008 3.4401 -1.0157 7 6 4.0341 4.0327 0.2080 8 6 3.8040 3.3144 1.3830 9 6 4.0511 3.9426 2.6971 10 8 3.2323 3.8290 3.5888 11 7 5.1841 4.6414 2.9075 12 6 5.4649 5.1306 4.1547 13 1 4.6686 5.5111 4.7773 14 6 6.7752 5.1376 4.6201 15 7 7.1157 5.9290 5.6116 16 14 8.0510 4.0217 3.8350 17 1 8.7929 4.7749 2.7921 18 1 9.0010 3.5485 4.8739 19 1 7.3737 2.8546 3.2152 20 6 6.1152 4.8776 1.8015 21 6 5.8396 6.2281 1.1924 22 8 4.9563 6.9224 1.6369 23 8 6.5754 6.6598 0.1560 24 6 3.3386 1.9995 1.3104 25 1 2.9716 -0.5626 0.8594 26 1 2.9715 -0.4618 -0.9177 27 1 3.1676 1.6750 -2.0411 28 1 3.9783 3.9945 -1.9254 29 1 4.3936 5.0499 0.2571 30 1 8.0296 5.9336 5.9365 31 1 7.1386 4.8498 2.1758 32 1 5.9842 4.1041 1.0447 33 1 6.3611 7.5324 -0.2013 34 1 3.1583 1.4385 2.2155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739091758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:37 Heat of formation + Delta-G solvation = -70.746308 kcal Electronic energy + Delta-G solvation = -22485.041289 eV Core-core repulsion = 18962.181490 eV Total energy + Delta-G solvation = -3522.859799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00945 -40.71599 -39.57018 -37.55214 -37.32342 -36.71153 -34.54210 -33.77228 -32.07619 -29.99653 -28.80728 -27.37426 -24.33534 -23.30112 -23.04965 -21.01622 -19.37471 -19.27188 -18.73428 -18.23663 -17.80623 -17.59832 -17.09481 -16.59326 -16.42665 -15.98761 -15.54095 -15.25259 -14.85431 -14.64133 -14.48479 -14.35010 -14.18689 -14.03981 -13.76738 -13.35889 -13.20128 -12.88592 -12.69091 -12.59174 -12.38619 -12.29058 -11.97576 -11.92822 -11.73048 -11.17885 -10.67031 -10.04836 -9.88602 -9.81442 -8.57999 -6.26058 -0.01095 0.29950 1.06630 1.14165 1.30003 1.43838 1.59600 1.82855 1.88882 2.02429 2.12515 2.47513 2.70103 2.91206 3.35881 3.54585 3.75826 3.79410 3.97254 3.99708 4.11968 4.33305 4.37470 4.38527 4.69005 4.83079 4.90829 5.05144 5.32616 5.42104 5.43428 5.50181 5.56353 5.93120 5.95571 6.34579 6.67082 6.74885 6.94565 7.08329 7.59981 8.59356 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.005635 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.627190 B = 4967.622771 C = 5551.864613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.236 3.764 3 C 0.025 3.975 4 C -0.089 4.089 5 C -0.074 4.074 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.138 4.138 9 C 0.505 3.495 10 O -0.602 6.602 11 N -0.450 5.450 12 C -0.338 4.338 13 H 0.039 0.961 14 C 0.009 3.991 15 N -0.905 5.905 16 Si 0.934 3.066 17 H -0.229 1.229 18 H -0.275 1.275 19 H -0.237 1.237 20 C 0.086 3.914 21 C 0.467 3.533 22 O -0.534 6.534 23 O -0.499 6.499 24 C -0.073 4.073 25 H 0.144 0.856 26 H 0.175 0.825 27 H 0.179 0.821 28 H 0.165 0.835 29 H 0.107 0.893 30 H 0.285 0.715 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.428 0.572 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 -10.942 -21.610 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.080 4.080 3 C -0.014 4.014 4 C -0.091 4.091 5 C -0.092 4.092 6 C -0.127 4.127 7 C -0.132 4.132 8 C -0.142 4.142 9 C 0.297 3.703 10 O -0.486 6.486 11 N -0.170 5.170 12 C -0.466 4.466 13 H 0.057 0.943 14 C -0.193 4.193 15 N -0.541 5.541 16 Si 0.755 3.245 17 H -0.154 1.154 18 H -0.201 1.201 19 H -0.160 1.160 20 C -0.038 4.038 21 C 0.308 3.692 22 O -0.423 6.423 23 O -0.313 6.313 24 C -0.092 4.092 25 H 0.162 0.838 26 H 0.192 0.808 27 H 0.197 0.803 28 H 0.183 0.817 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.174 0.826 33 H 0.290 0.710 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.370 -11.083 -20.718 23.615 hybrid contribution 0.468 1.344 1.049 1.768 sum 2.838 -9.739 -19.668 22.130 Atomic orbital electron populations 1.81266 1.15391 1.10309 1.11353 1.29753 0.95701 0.91368 0.91177 1.18552 0.78782 0.93469 1.10567 1.19597 1.00920 0.96470 0.92092 1.21740 0.94857 0.93389 0.99230 1.21447 0.98372 0.96061 0.96779 1.21553 0.99780 0.99176 0.92726 1.19953 1.05329 0.96982 0.91912 1.19143 0.82710 0.79779 0.88682 1.90630 1.46108 1.64078 1.47825 1.43214 1.19906 1.46794 1.07127 1.18563 0.94555 1.40948 0.92494 0.94293 1.26306 0.99540 0.96678 0.96823 1.69834 1.20891 1.34675 1.28678 0.86035 0.78331 0.80664 0.79510 1.15368 1.20097 1.15952 1.21913 0.96477 0.93420 0.91971 1.24040 0.78405 0.89394 0.77364 1.90764 1.33191 1.57458 1.60881 1.84476 1.59218 1.42113 1.45452 1.21180 0.96056 0.92695 0.99263 0.83789 0.80794 0.80319 0.81707 0.87561 0.90558 0.87830 0.82603 0.71027 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.74 18.54 20.01 0.37 -13.37 16 2 C 0.24 4.36 15.41 89.44 1.38 5.74 16 3 C 0.03 0.20 5.83 28.04 0.16 0.37 16 4 C -0.09 -1.46 5.08 -19.90 -0.10 -1.56 16 5 C -0.07 -0.94 9.69 22.34 0.22 -0.72 16 6 C -0.11 -1.87 10.03 22.23 0.22 -1.65 16 7 C -0.11 -3.19 7.45 22.54 0.17 -3.02 16 8 C -0.14 -4.92 5.06 -20.09 -0.10 -5.02 16 9 C 0.51 25.16 7.22 86.75 0.63 25.78 16 10 O -0.60 -36.02 16.84 -4.02 -0.07 -36.09 16 11 N -0.45 -22.67 1.73 -643.02 -1.11 -23.78 16 12 C -0.34 -20.52 9.24 84.10 0.78 -19.75 16 13 H 0.04 2.84 7.85 -2.91 -0.02 2.82 16 14 C 0.01 0.53 5.37 84.96 0.46 0.98 16 15 N -0.90 -54.02 13.95 21.68 0.30 -53.71 16 16 Si 0.93 38.43 24.85 68.60 1.70 40.14 16 17 H -0.23 -7.98 6.72 99.48 0.67 -7.31 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 20 C 0.09 3.32 4.47 85.63 0.38 3.70 16 21 C 0.47 17.18 5.93 71.23 0.42 17.60 16 22 O -0.53 -24.97 16.88 21.96 0.37 -24.60 16 23 O -0.50 -12.20 13.42 -51.41 -0.69 -12.89 16 24 C -0.07 -2.01 9.34 22.54 0.21 -1.80 16 25 H 0.14 0.67 8.08 -2.39 -0.02 0.65 16 26 H 0.17 -0.30 8.08 -2.38 -0.02 -0.32 16 27 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 28 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.11 3.26 4.31 -2.91 -0.01 3.25 16 30 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.10 3.93 2.76 -2.39 -0.01 3.92 16 32 H 0.16 4.62 5.26 -2.39 -0.01 4.61 16 33 H 0.43 6.43 9.10 -74.06 -0.67 5.76 16 34 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -94.80 305.22 6.17 -88.62 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.47 Total: 15.02 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 4.82 Total: 20.66 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -0.44 Total: -90.86 kcal Atomic # 8 Polarization: -73.19 SS G_CDS: -0.39 Total: -73.57 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.70 Total: 40.14 kcal Total: -94.80 6.17 -88.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739091758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.876 kcal (2) G-P(sol) polarization free energy of solvation -94.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds