Wall clock time and date at job start Tue Mar 31 2020 03:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86802 * 119.99601 * 2 1 4 4 H 1.48500 * 109.47234 * 270.00370 * 3 2 1 5 5 H 1.48504 * 109.47064 * 30.00606 * 3 2 1 6 6 H 1.48495 * 109.47040 * 150.00408 * 3 2 1 7 7 C 1.38755 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99697 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.34311 * 116.99855 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99857 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99785 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.46760 * 180.02562 * 12 10 9 14 14 C 1.34773 * 119.99832 * 180.02562 * 13 12 10 15 15 O 1.21650 * 120.00336 * 359.97438 * 14 13 12 16 16 C 1.47058 * 120.00161 * 179.97438 * 14 13 12 17 17 C 1.35868 * 125.43088 * 180.02562 * 16 14 13 18 18 C 1.41590 * 107.72568 * 179.97438 * 17 16 14 19 19 C 1.40105 * 133.37815 * 179.97438 * 18 17 16 20 20 C 1.36434 * 119.83013 * 180.02562 * 19 18 17 21 21 C 1.38938 * 120.61619 * 359.97352 * 20 19 18 22 22 C 1.37667 * 120.65240 * 0.04007 * 21 20 19 23 23 C 1.39235 * 119.80608 * 359.97085 * 22 21 20 24 24 N 1.37478 * 133.17921 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.60983 * 0.03169 * 24 23 22 26 26 H 0.97001 * 120.00517 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47116 * 59.99929 * 12 10 9 28 28 H 1.09004 * 109.46832 * 299.99707 * 12 10 9 29 29 H 0.96999 * 120.00560 * 359.97438 * 13 12 10 30 30 H 1.07999 * 126.13952 * 359.95209 * 17 16 14 31 31 H 1.07997 * 120.08011 * 0.06538 * 19 18 17 32 32 H 1.08005 * 119.69346 * 179.97438 * 20 19 18 33 33 H 1.08005 * 119.67604 * 180.02562 * 21 20 19 34 34 H 1.08004 * 120.09847 * 180.25294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0466 -1.4001 5 1 1.4457 2.6527 0.7002 6 1 3.5459 1.4403 0.6999 7 6 2.0083 -1.2016 -0.0005 8 1 3.0883 -1.2015 -0.0010 9 8 1.3337 -2.3701 -0.0005 10 6 2.0653 -3.4964 -0.0005 11 8 3.2757 -3.4329 -0.0001 12 6 1.3811 -4.8392 -0.0011 13 7 2.3902 -5.9013 -0.0004 14 6 2.0082 -7.1938 -0.0013 15 8 0.8255 -7.4785 -0.0022 16 6 3.0210 -8.2600 -0.0011 17 6 2.7609 -9.5935 -0.0024 18 6 4.0020 -10.2749 -0.0023 19 6 4.3555 -11.6306 -0.0028 20 6 5.6720 -11.9887 -0.0020 21 6 6.6687 -11.0206 -0.0012 22 6 6.3469 -9.6821 -0.0004 23 6 5.0105 -9.2915 -0.0010 24 7 4.3887 -8.0653 0.0000 25 1 4.8367 -7.2050 0.0009 26 1 -0.4851 0.8400 0.0004 27 1 0.7587 -4.9295 -0.8913 28 1 0.7581 -4.9299 0.8887 29 1 3.3333 -5.6744 0.0000 30 1 1.7829 -10.0517 -0.0030 31 1 3.5878 -12.3901 -0.0045 32 1 5.9420 -13.0344 -0.0020 33 1 7.7060 -11.3211 -0.0010 34 1 7.1289 -8.9371 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745640118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:02 Heat of formation + Delta-G solvation = -77.832286 kcal Electronic energy + Delta-G solvation = -20957.317938 eV Core-core repulsion = 17434.150868 eV Total energy + Delta-G solvation = -3523.167070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.63558 -41.35668 -40.37822 -37.74725 -37.59357 -35.72675 -34.38325 -33.15918 -31.09810 -30.13132 -29.35817 -27.26411 -24.86189 -23.15749 -22.44726 -22.01664 -21.36445 -20.01114 -19.83534 -18.51023 -17.92382 -17.43803 -17.35471 -16.66204 -16.38682 -16.38620 -16.21072 -15.50534 -15.31894 -15.05035 -14.78026 -14.52510 -14.13926 -14.13479 -13.86011 -13.64261 -13.11429 -12.61811 -12.57263 -12.44751 -12.20772 -12.08251 -11.83132 -11.58080 -11.29637 -10.93317 -10.76362 -10.53134 -9.26710 -8.80344 -8.59871 -6.41014 -0.29226 0.66843 1.01777 1.18823 1.30826 1.47322 1.53627 1.58405 1.88609 2.13746 2.14722 2.64199 2.92248 2.95748 3.51162 3.72615 4.09149 4.20046 4.20142 4.26017 4.36066 4.39846 4.48160 4.56789 4.78205 4.91398 4.94663 5.11148 5.14027 5.44982 5.54467 5.65878 5.69377 5.73993 6.08423 6.19895 6.39150 6.47500 6.78671 6.85043 7.60155 8.60178 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.036666 B = 0.002783 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.472648 B =10058.586569 C =10806.915035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.003 4.003 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.422 4.422 8 H 0.089 0.911 9 O -0.234 6.234 10 C 0.394 3.606 11 O -0.572 6.572 12 C 0.148 3.852 13 N -0.707 5.707 14 C 0.590 3.410 15 O -0.553 6.553 16 C 0.001 3.999 17 C -0.106 4.106 18 C -0.145 4.145 19 C -0.069 4.069 20 C -0.150 4.150 21 C -0.082 4.082 22 C -0.146 4.146 23 C 0.101 3.899 24 N -0.574 5.574 25 H 0.426 0.574 26 H 0.281 0.719 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.412 0.588 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 -20.508 -0.016 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.204 4.204 3 Si 0.839 3.161 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.107 0.893 9 O -0.141 6.141 10 C 0.242 3.758 11 O -0.471 6.471 12 C 0.024 3.976 13 N -0.362 5.362 14 C 0.378 3.622 15 O -0.431 6.431 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.149 4.149 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.101 4.101 22 C -0.166 4.166 23 C -0.009 4.009 24 N -0.179 5.179 25 H 0.266 0.734 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.250 0.750 30 H 0.179 0.821 31 H 0.160 0.840 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.061 -20.300 -0.013 23.118 hybrid contribution 0.633 1.557 -0.005 1.681 sum 11.694 -18.743 -0.017 22.091 Atomic orbital electron populations 1.70077 1.07756 1.29678 1.46054 1.26606 0.96887 1.02503 0.94427 0.84579 0.77694 0.74278 0.79542 1.18452 1.18588 1.18527 1.21494 0.92395 0.80606 1.55257 0.89316 1.83868 1.40159 1.14099 1.75961 1.23749 0.86649 0.88036 0.77384 1.90502 1.16385 1.88114 1.52075 1.20401 0.90270 0.80413 1.06546 1.45572 1.11105 1.04596 1.74948 1.17321 0.87596 0.81161 0.76107 1.90837 1.17656 1.83025 1.51588 1.19780 0.82590 0.94551 1.13946 1.21104 0.98888 0.90394 1.02963 1.18463 0.92128 0.94670 1.09647 1.20720 0.97806 0.92975 0.97250 1.21043 0.91992 1.01062 1.02781 1.21334 1.01083 0.91140 0.96592 1.20438 0.91690 0.97973 1.06512 1.18729 0.95023 0.84269 1.02893 1.41959 1.04284 1.08041 1.63599 0.73385 0.90987 0.86712 0.86722 0.75046 0.82119 0.83991 0.83054 0.82592 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.00 13.67 21.63 0.30 -51.70 16 2 C 0.00 -0.17 5.49 84.87 0.47 0.29 16 3 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.42 -24.59 9.64 67.94 0.66 -23.93 16 8 H 0.09 5.16 6.86 -2.91 -0.02 5.14 16 9 O -0.23 -13.21 9.75 14.91 0.15 -13.07 16 10 C 0.39 18.53 7.97 71.24 0.57 19.09 16 11 O -0.57 -28.19 14.90 20.78 0.31 -27.88 16 12 C 0.15 5.38 6.27 85.63 0.54 5.92 16 13 N -0.71 -22.34 5.52 -470.45 -2.60 -24.93 16 14 C 0.59 18.49 7.80 86.56 0.68 19.17 16 15 O -0.55 -20.28 16.84 -4.19 -0.07 -20.35 16 16 C 0.00 0.02 6.97 39.91 0.28 0.30 16 17 C -0.11 -2.65 10.53 22.55 0.24 -2.41 16 18 C -0.14 -3.23 6.16 -21.36 -0.13 -3.36 16 19 C -0.07 -1.16 10.06 22.30 0.22 -0.93 16 20 C -0.15 -1.96 9.96 22.02 0.22 -1.74 16 21 C -0.08 -1.06 10.01 22.30 0.22 -0.83 16 22 C -0.15 -2.40 10.08 22.37 0.23 -2.17 16 23 C 0.10 2.19 7.25 39.14 0.28 2.48 16 24 N -0.57 -12.88 6.07 -177.18 -1.08 -13.95 16 25 H 0.43 8.06 8.12 -92.71 -0.75 7.31 16 26 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.12 3.95 8.14 -2.38 -0.02 3.93 16 29 H 0.41 12.23 6.49 -92.71 -0.60 11.63 16 30 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -72.71 312.18 3.31 -69.40 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.18 Total: 26.70 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 4.46 Total: 11.86 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -3.38 Total: -90.59 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: 0.38 Total: -61.29 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -72.71 3.31 -69.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745640118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.432 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds