Wall clock time and date at job start Tue Mar 31 2020 03:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46824 * 2 1 4 4 C 1.36936 * 119.99620 * 73.12143 * 3 2 1 5 5 H 1.08007 * 119.99718 * 207.82499 * 4 3 2 6 6 C 1.38806 * 120.00513 * 27.55720 * 4 3 2 7 7 N 1.31622 * 119.99805 * 27.76827 * 6 4 3 8 8 Si 1.86800 * 120.00426 * 207.76800 * 6 4 3 9 9 H 1.48500 * 109.47008 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47449 * 119.99788 * 8 6 4 11 11 H 1.48504 * 109.46825 * 239.99999 * 8 6 4 12 12 S 1.65599 * 119.99898 * 253.12484 * 3 2 1 13 13 O 1.42098 * 106.40341 * 23.54020 * 12 3 2 14 14 O 1.42108 * 106.39802 * 156.46114 * 12 3 2 15 15 C 1.76192 * 107.21589 * 269.99687 * 12 3 2 16 16 C 1.35484 * 126.08266 * 269.69067 * 15 12 3 17 17 N 1.34961 * 108.98861 * 179.83321 * 16 15 12 18 18 H 0.96997 * 125.63685 * 180.15462 * 17 16 15 19 19 C 1.37704 * 108.72620 * 0.43616 * 17 16 15 20 20 C 1.46488 * 126.26155 * 179.73600 * 19 17 16 21 21 O 1.21626 * 120.00058 * 179.97438 * 20 19 17 22 22 O 1.34891 * 120.00049 * 359.97438 * 20 19 17 23 23 C 1.37995 * 107.47434 * 359.73315 * 19 17 16 24 24 H 1.09003 * 109.46733 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47656 * 299.99958 * 1 2 3 26 26 H 1.09004 * 109.46938 * 60.00740 * 1 2 3 27 27 H 1.08998 * 109.47134 * 239.99979 * 2 1 3 28 28 H 1.08996 * 109.47177 * 119.99491 * 2 1 3 29 29 H 0.97004 * 120.00297 * 180.02562 * 7 6 4 30 30 H 1.08002 * 125.50386 * 359.97438 * 16 15 12 31 31 H 0.96700 * 117.00036 * 179.97438 * 22 20 19 32 32 H 1.07996 * 126.51358 * 179.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.9218 2.1415 1.1349 5 1 1.8419 3.2160 1.0598 6 6 1.9212 1.5309 2.3814 7 7 2.5320 0.3772 2.5493 8 14 1.0535 2.3465 3.8206 9 1 0.4493 3.6271 3.3731 10 1 -0.0126 1.4470 4.3302 11 1 2.0346 2.6141 4.9029 12 16 2.6868 2.0232 -1.3724 13 8 2.1679 1.2715 -2.4609 14 8 2.5472 3.4333 -1.2649 15 6 4.4157 1.6886 -1.3160 16 6 5.3656 2.4869 -0.7718 17 7 6.5705 1.8961 -0.9151 18 1 7.4171 2.2577 -0.6096 19 6 6.4002 0.6981 -1.5724 20 6 7.4567 -0.2507 -1.9321 21 8 7.1764 -1.2808 -2.5149 22 8 8.7405 0.0181 -1.6170 23 6 5.0521 0.5550 -1.8302 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.5313 -0.0498 3.4204 30 1 5.1870 3.4407 -0.2976 31 1 9.4023 -0.6382 -1.8746 32 1 4.5788 -0.2748 -2.3340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761264879.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:47 Heat of formation + Delta-G solvation = -139.526157 kcal Electronic energy + Delta-G solvation = -21290.452107 eV Core-core repulsion = 17764.220647 eV Total energy + Delta-G solvation = -3526.231460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -42.44930 -40.69130 -37.79329 -37.62879 -37.19982 -36.26988 -33.56768 -32.42107 -30.93480 -30.81589 -26.58378 -25.20609 -23.27242 -22.85804 -21.47288 -20.40889 -19.96226 -18.82711 -18.54141 -18.08703 -16.93452 -16.73837 -16.72931 -16.38440 -16.02083 -15.19581 -15.13826 -14.69237 -14.46272 -14.44597 -13.99164 -13.67388 -13.62314 -13.05001 -12.74355 -12.68039 -12.60668 -12.54858 -12.51287 -12.11994 -12.04595 -11.91932 -11.71510 -11.47285 -11.06929 -10.46436 -9.68202 -9.58225 -8.24786 -5.85151 0.05753 0.10695 1.11326 1.52741 1.59788 1.71122 1.72037 1.90343 2.21805 2.39629 2.84497 3.01363 3.42557 3.74746 4.05218 4.10207 4.32915 4.45956 4.59142 4.75440 4.78918 4.86562 5.06687 5.29669 5.33582 5.44674 5.48881 5.53146 5.66436 5.88302 6.37112 6.54544 6.83545 6.99217 7.43478 8.68205 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.006051 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.384247 B = 4626.383241 C = 5017.335273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 N -0.815 5.815 4 C -0.276 4.276 5 H 0.104 0.896 6 C 0.013 3.987 7 N -0.849 5.849 8 Si 0.973 3.027 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.276 1.276 12 S 2.587 3.413 13 O -1.026 7.026 14 O -1.011 7.011 15 C -0.764 4.764 16 C 0.160 3.840 17 N -0.500 5.500 18 H 0.443 0.557 19 C -0.071 4.071 20 C 0.569 3.431 21 O -0.540 6.540 22 O -0.503 6.503 23 C -0.033 4.033 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.276 0.724 30 H 0.212 0.788 31 H 0.439 0.561 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 0.706 0.139 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 N -0.640 5.640 4 C -0.422 4.422 5 H 0.121 0.879 6 C -0.198 4.198 7 N -0.487 5.487 8 Si 0.796 3.204 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.202 1.202 12 S 2.689 3.311 13 O -1.016 7.016 14 O -1.002 7.002 15 C -0.853 4.853 16 C 0.015 3.985 17 N -0.096 5.096 18 H 0.285 0.715 19 C -0.181 4.181 20 C 0.415 3.585 21 O -0.431 6.431 22 O -0.318 6.318 23 C -0.059 4.059 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.302 0.698 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.440 0.992 -0.692 8.526 hybrid contribution 1.148 -0.445 0.668 1.401 sum 9.588 0.547 -0.024 9.604 Atomic orbital electron populations 1.21922 0.95807 1.01590 1.01159 1.21501 0.94811 0.82911 1.02931 1.53774 1.60918 1.21671 1.27625 1.19819 1.45667 0.92915 0.83765 0.87860 1.26197 0.96223 0.96986 1.00403 1.70052 1.35590 1.17889 1.25211 0.85178 0.78488 0.79125 0.77561 1.18558 1.19918 1.20208 1.08388 0.73668 0.73565 0.75507 1.93309 1.79617 1.72786 1.55903 1.93304 1.86920 1.32362 1.87568 1.32132 1.28208 1.05504 1.19419 1.22140 0.82544 0.98281 0.95555 1.41967 1.10095 1.15091 1.42476 0.71516 1.19363 0.93236 0.91856 1.13665 1.19144 0.81706 0.82961 0.74659 1.90950 1.83856 1.27100 1.41150 1.84509 1.16773 1.54308 1.76244 1.21009 0.91021 0.96869 0.97010 0.90748 0.92856 0.94001 0.92612 0.88519 0.91345 0.77117 0.69830 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 10.05 71.98 0.72 -5.00 16 2 C 0.10 4.67 5.78 86.38 0.50 5.17 16 3 N -0.81 -38.60 2.94 -343.44 -1.01 -39.61 16 4 C -0.28 -13.25 8.89 84.03 0.75 -12.50 16 5 H 0.10 5.00 7.34 -2.91 -0.02 4.98 16 6 C 0.01 0.58 4.98 84.86 0.42 1.00 16 7 N -0.85 -39.98 11.14 21.65 0.24 -39.74 16 8 Si 0.97 36.39 29.63 68.60 2.03 38.42 16 9 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 10 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 11 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 12 S 2.59 121.26 5.76 -56.49 -0.33 120.93 16 13 O -1.03 -52.06 16.62 -128.00 -2.13 -54.18 16 14 O -1.01 -50.39 16.68 -128.00 -2.13 -52.52 16 15 C -0.76 -31.21 6.18 22.01 0.14 -31.08 16 16 C 0.16 5.25 11.61 83.57 0.97 6.22 16 17 N -0.50 -13.55 6.07 -184.05 -1.12 -14.67 16 18 H 0.44 7.98 8.96 -92.71 -0.83 7.15 16 19 C -0.07 -2.35 7.10 40.31 0.29 -2.06 16 20 C 0.57 16.44 8.30 69.97 0.58 17.02 16 21 O -0.54 -18.86 17.67 19.42 0.34 -18.51 16 22 O -0.50 -9.24 13.44 -58.06 -0.78 -10.02 16 23 C -0.03 -1.30 10.46 22.59 0.24 -1.06 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.05 2.12 7.98 -2.39 -0.02 2.10 16 26 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.06 2.43 7.22 -2.39 -0.02 2.41 16 28 H 0.10 4.54 5.36 -2.39 -0.01 4.52 16 29 H 0.28 12.13 8.31 -92.71 -0.77 11.36 16 30 H 0.21 5.75 8.06 -2.91 -0.02 5.73 16 31 H 0.44 3.62 9.11 -74.06 -0.67 2.95 16 32 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -68.21 301.32 -0.59 -68.80 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.31 Total: 23.40 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.60 Total: -22.29 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -1.89 Total: -94.02 kcal Atomic # 8 Polarization: -130.54 SS G_CDS: -4.70 Total: -135.24 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 16 Polarization: 121.26 SS G_CDS: -0.33 Total: 120.93 kcal Total: -68.21 -0.59 -68.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761264879.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.726 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds