Wall clock time and date at job start Tue Mar 31 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54272 * 2 1 4 4 O 1.42102 * 110.54259 * 136.75157 * 2 1 3 5 5 C 1.76199 * 104.45230 * 248.37068 * 2 1 3 6 6 C 1.37833 * 119.93323 * 114.72370 * 5 2 1 7 7 C 1.39727 * 119.86962 * 179.73481 * 6 5 2 8 8 C 1.47544 * 120.12845 * 180.29567 * 7 6 5 9 9 O 1.21521 * 119.99619 * 0.27256 * 8 7 6 10 10 O 1.34749 * 119.99764 * 180.27034 * 8 7 6 11 11 C 1.34860 * 116.99735 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99896 * 359.97438 * 11 10 8 13 13 C 1.38804 * 120.00215 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99832 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00195 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47040 * 59.99521 * 15 13 11 17 17 H 1.48501 * 109.47352 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47168 * 299.99616 * 15 13 11 19 19 C 1.39768 * 119.74782 * 0.56291 * 7 6 5 20 20 C 1.37791 * 119.86758 * 359.71190 * 19 7 6 21 21 C 1.38656 * 119.93829 * 295.00579 * 5 2 1 22 22 F 1.35097 * 119.87050 * 359.97438 * 21 5 2 23 23 H 1.09001 * 109.46838 * 51.62881 * 1 2 3 24 24 H 1.08998 * 109.46934 * 171.62681 * 1 2 3 25 25 H 1.08992 * 109.47290 * 291.62405 * 1 2 3 26 26 H 1.08001 * 120.06865 * 359.97438 * 6 5 2 27 27 H 0.97000 * 120.00420 * 180.02562 * 14 13 11 28 28 H 1.07991 * 120.06750 * 179.68712 * 19 7 6 29 29 H 1.07994 * 119.93605 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 0.9117 5 6 2.2537 -0.6289 -1.5861 6 6 2.9092 0.1801 -2.4892 7 6 3.2622 -0.3217 -3.7446 8 6 3.9697 0.5374 -4.7133 9 8 4.2508 1.6822 -4.4181 10 8 4.3040 0.0524 -5.9252 11 6 4.9496 0.8894 -6.7627 12 1 5.1754 1.8982 -6.4500 13 6 5.3230 0.4548 -8.0270 14 7 5.0478 -0.7726 -8.4076 15 14 6.2165 1.6143 -9.1872 16 1 7.4932 2.0496 -8.5659 17 1 6.5021 0.9134 -10.4649 18 1 5.3652 2.8017 -9.4531 19 6 2.9376 -1.6388 -4.0813 20 6 2.2772 -2.4365 -3.1724 21 6 1.9346 -1.9349 -1.9255 22 9 1.2875 -2.7217 -1.0381 23 1 -0.3633 0.6379 -0.8057 24 1 -0.3633 -1.0167 -0.1496 25 1 -0.3633 0.3787 0.9553 26 1 3.1528 1.1988 -2.2257 27 1 5.3090 -1.0766 -9.2910 28 1 3.2035 -2.0303 -5.0519 29 1 2.0255 -3.4543 -3.4315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792476130.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:44 Heat of formation + Delta-G solvation = -158.876221 kcal Electronic energy + Delta-G solvation = -20194.321638 eV Core-core repulsion = 16511.498039 eV Total energy + Delta-G solvation = -3682.823598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.035 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.37561 -39.67471 -38.20942 -37.16653 -36.05904 -35.30809 -32.40705 -31.57799 -30.81597 -29.73159 -25.83373 -23.77175 -23.49272 -20.89472 -19.13715 -18.22141 -17.98236 -17.41589 -16.87181 -16.41706 -15.99703 -15.84595 -15.39076 -15.07561 -14.69523 -14.47473 -14.20694 -13.63993 -13.54415 -13.31725 -13.23197 -12.57654 -12.49048 -12.17845 -12.09218 -11.94542 -11.68324 -11.33454 -11.20750 -10.78621 -10.59972 -10.56654 -10.02954 -9.57957 -9.29096 -8.88251 -8.74361 -6.62489 -4.23840 -0.13052 0.50815 0.92700 2.62968 2.82387 3.09568 3.12833 3.13507 3.60795 3.74608 3.80498 3.95267 4.05785 4.29596 4.52246 4.55570 4.81332 4.98892 5.04437 5.23940 5.26780 5.38687 5.58618 5.81741 5.97190 6.27161 6.52875 6.74286 7.21482 7.74808 8.51373 8.86041 9.61674 10.54514 Molecular weight = 288.03amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.004114 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.029688 B = 6805.064255 C = 7434.238492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.929 6.929 4 O -0.930 6.930 5 C -0.707 4.707 6 C 0.049 3.951 7 C -0.110 4.110 8 C 0.426 3.574 9 O -0.546 6.546 10 O -0.202 6.202 11 C -0.373 4.373 12 H 0.101 0.899 13 C 0.042 3.958 14 N -0.855 5.855 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.267 1.267 19 C 0.004 3.996 20 C -0.176 4.176 21 C 0.189 3.811 22 F -0.126 7.126 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.167 0.833 27 H 0.274 0.726 28 H 0.161 0.839 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.176 -3.366 11.289 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.927 6.927 4 O -0.927 6.927 5 C -0.792 4.792 6 C 0.030 3.970 7 C -0.112 4.112 8 C 0.274 3.726 9 O -0.445 6.445 10 O -0.108 6.108 11 C -0.448 4.448 12 H 0.118 0.882 13 C -0.163 4.163 14 N -0.491 5.491 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.015 4.015 20 C -0.195 4.195 21 C 0.168 3.832 22 F -0.105 7.105 23 H 0.154 0.846 24 H 0.151 0.849 25 H 0.153 0.847 26 H 0.184 0.816 27 H 0.084 0.916 28 H 0.179 0.821 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.520 -3.016 11.793 15.453 hybrid contribution -0.183 -0.078 -1.229 1.245 sum -9.703 -3.094 10.564 14.674 Atomic orbital electron populations 1.30220 1.25409 1.12294 1.12101 1.05188 0.78053 0.74800 0.73858 1.93606 1.77402 1.36049 1.85598 1.93611 1.77204 1.61602 1.60265 1.30426 1.20319 1.02686 1.25808 1.20968 0.87048 0.99613 0.89397 1.19613 1.02484 0.94633 0.94489 1.20427 0.82477 0.86244 0.83404 1.90673 1.55933 1.19338 1.78533 1.83859 1.62242 1.43262 1.21465 1.21342 1.34166 0.95784 0.93525 0.88177 1.25425 0.97065 0.97097 0.96737 1.69949 1.42850 1.15929 1.20384 0.85655 0.79644 0.79116 0.78338 1.19227 1.20212 1.19240 1.21854 0.88602 0.91624 0.99395 1.21201 1.03648 1.02131 0.92550 1.17226 0.91656 0.86904 0.87413 1.91560 1.78124 1.73623 1.67145 0.84616 0.84885 0.84749 0.81579 0.91610 0.82138 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.45 10.79 101.05 1.09 -3.36 15 2 S 2.50 29.55 5.44 -107.50 -0.58 28.96 15 3 O -0.93 -13.72 16.73 -57.54 -0.96 -14.68 15 4 O -0.93 -13.59 17.34 -57.54 -1.00 -14.59 15 5 C -0.71 -9.90 5.58 -39.58 -0.22 -10.12 15 6 C 0.05 0.82 9.04 -39.17 -0.35 0.47 15 7 C -0.11 -2.09 5.87 -104.98 -0.62 -2.71 15 8 C 0.43 10.37 7.83 34.53 0.27 10.64 15 9 O -0.55 -14.51 15.59 -19.28 -0.30 -14.81 15 10 O -0.20 -5.46 8.99 -21.70 -0.20 -5.66 15 11 C -0.37 -10.51 9.65 30.94 0.30 -10.21 15 12 H 0.10 2.84 6.86 -52.49 -0.36 2.48 15 13 C 0.04 1.13 5.49 -17.52 -0.10 1.03 15 14 N -0.86 -23.51 13.67 55.49 0.76 -22.75 15 15 Si 0.95 20.27 29.55 -169.99 -5.02 15.25 15 16 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 19 C 0.00 0.06 9.61 -39.17 -0.38 -0.32 15 20 C -0.18 -2.31 10.01 -39.57 -0.40 -2.70 15 21 C 0.19 2.51 7.20 -39.26 -0.28 2.22 15 22 F -0.13 -1.52 15.71 2.25 0.04 -1.48 15 23 H 0.14 0.75 8.14 -51.92 -0.42 0.33 15 24 H 0.13 0.77 7.57 -51.92 -0.39 0.38 15 25 H 0.13 0.62 8.14 -51.93 -0.42 0.20 15 26 H 0.17 2.86 6.79 -52.49 -0.36 2.50 15 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 28 H 0.16 2.61 7.61 -52.49 -0.40 2.21 15 29 H 0.15 1.49 8.06 -52.49 -0.42 1.06 15 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -34.90 286.90 -5.54 -40.44 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -1.91 Total: 0.04 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.68 Total: -15.05 kcal Atomic # 7 Polarization: -23.51 SS G_CDS: 0.76 Total: -22.75 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -2.46 Total: -49.74 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 29.55 SS G_CDS: -0.58 Total: 28.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.90 -5.54 -40.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792476130.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.434 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds