Wall clock time and date at job start Tue Mar 31 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54272 * 2 1 4 4 O 1.42102 * 110.54259 * 136.75157 * 2 1 3 5 5 C 1.76199 * 104.45230 * 248.37068 * 2 1 3 6 6 C 1.37833 * 119.93323 * 114.72370 * 5 2 1 7 7 C 1.39727 * 119.86962 * 179.73481 * 6 5 2 8 8 C 1.47544 * 120.12845 * 180.29567 * 7 6 5 9 9 O 1.21521 * 119.99619 * 0.27256 * 8 7 6 10 10 O 1.34749 * 119.99764 * 180.27034 * 8 7 6 11 11 C 1.34860 * 116.99735 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99896 * 359.97438 * 11 10 8 13 13 C 1.38804 * 120.00215 * 180.02562 * 11 10 8 14 14 N 1.31417 * 119.99832 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00195 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47040 * 59.99521 * 15 13 11 17 17 H 1.48501 * 109.47352 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47168 * 299.99616 * 15 13 11 19 19 C 1.39768 * 119.74782 * 0.56291 * 7 6 5 20 20 C 1.37791 * 119.86758 * 359.71190 * 19 7 6 21 21 C 1.38656 * 119.93829 * 295.00579 * 5 2 1 22 22 F 1.35097 * 119.87050 * 359.97438 * 21 5 2 23 23 H 1.09001 * 109.46838 * 51.62881 * 1 2 3 24 24 H 1.08998 * 109.46934 * 171.62681 * 1 2 3 25 25 H 1.08992 * 109.47290 * 291.62405 * 1 2 3 26 26 H 1.08001 * 120.06865 * 359.97438 * 6 5 2 27 27 H 0.97000 * 120.00420 * 180.02562 * 14 13 11 28 28 H 1.07991 * 120.06750 * 179.68712 * 19 7 6 29 29 H 1.07994 * 119.93605 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 0.9117 5 6 2.2537 -0.6289 -1.5861 6 6 2.9092 0.1801 -2.4892 7 6 3.2622 -0.3217 -3.7446 8 6 3.9697 0.5374 -4.7133 9 8 4.2508 1.6822 -4.4181 10 8 4.3040 0.0524 -5.9252 11 6 4.9496 0.8894 -6.7627 12 1 5.1754 1.8982 -6.4500 13 6 5.3230 0.4548 -8.0270 14 7 5.0478 -0.7726 -8.4076 15 14 6.2165 1.6143 -9.1872 16 1 7.4932 2.0496 -8.5659 17 1 6.5021 0.9134 -10.4649 18 1 5.3652 2.8017 -9.4531 19 6 2.9376 -1.6388 -4.0813 20 6 2.2772 -2.4365 -3.1724 21 6 1.9346 -1.9349 -1.9255 22 9 1.2875 -2.7217 -1.0381 23 1 -0.3633 0.6379 -0.8057 24 1 -0.3633 -1.0167 -0.1496 25 1 -0.3633 0.3787 0.9553 26 1 3.1528 1.1988 -2.2257 27 1 5.3090 -1.0766 -9.2910 28 1 3.2035 -2.0303 -5.0519 29 1 2.0255 -3.4543 -3.4315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792476130.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:43 Heat of formation + Delta-G solvation = -184.634923 kcal Electronic energy + Delta-G solvation = -20195.438619 eV Core-core repulsion = 16511.498039 eV Total energy + Delta-G solvation = -3683.940580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.035 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.46225 -41.40546 -39.75622 -38.20845 -37.32176 -37.09840 -34.41237 -32.83073 -32.18488 -30.37110 -27.78715 -25.27672 -24.76014 -22.45064 -20.37803 -19.97408 -19.39979 -18.87134 -18.05782 -17.42275 -17.40271 -16.89434 -16.82202 -16.65116 -16.47607 -16.19886 -15.38443 -14.93615 -14.72381 -14.15598 -14.00239 -13.94983 -13.84295 -13.68545 -13.27360 -13.20160 -13.14837 -13.08734 -12.45542 -12.22037 -12.16492 -12.07994 -11.84547 -11.27907 -10.79209 -10.74854 -10.18413 -8.62377 -6.38692 -1.03227 -0.76300 -0.35057 1.24877 1.33651 1.48932 1.51389 1.68309 2.02270 2.28978 2.49700 2.62745 2.81476 2.95477 3.13057 3.44382 3.80579 3.88260 3.89527 4.07025 4.23964 4.40359 4.52983 4.63414 4.85117 4.90968 5.04690 5.11726 5.41149 5.73715 6.50332 6.82198 7.60285 8.57169 Molecular weight = 288.03amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.004114 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.029688 B = 6805.064255 C = 7434.238492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.617 4.617 2 S 2.499 3.501 3 O -0.968 6.968 4 O -0.961 6.961 5 C -0.704 4.704 6 C 0.045 3.955 7 C -0.143 4.143 8 C 0.429 3.571 9 O -0.577 6.577 10 O -0.224 6.224 11 C -0.421 4.421 12 H 0.084 0.916 13 C 0.002 3.998 14 N -0.891 5.891 15 Si 1.018 2.982 16 H -0.263 1.263 17 H -0.257 1.257 18 H -0.261 1.261 19 C 0.007 3.993 20 C -0.159 4.159 21 C 0.209 3.791 22 F -0.109 7.109 23 H 0.157 0.843 24 H 0.155 0.845 25 H 0.168 0.832 26 H 0.153 0.847 27 H 0.283 0.717 28 H 0.155 0.845 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -4.616 12.194 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.772 4.772 2 S 2.679 3.321 3 O -0.965 6.965 4 O -0.959 6.959 5 C -0.787 4.787 6 C 0.026 3.974 7 C -0.145 4.145 8 C 0.279 3.721 9 O -0.477 6.477 10 O -0.132 6.132 11 C -0.496 4.496 12 H 0.102 0.898 13 C -0.199 4.199 14 N -0.527 5.527 15 Si 0.836 3.164 16 H -0.188 1.188 17 H -0.181 1.181 18 H -0.185 1.185 19 C -0.011 4.011 20 C -0.178 4.178 21 C 0.188 3.812 22 F -0.087 7.087 23 H 0.175 0.825 24 H 0.173 0.827 25 H 0.186 0.814 26 H 0.171 0.829 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.593 -4.297 12.696 17.721 hybrid contribution 0.257 0.219 -1.217 1.263 sum -11.336 -4.078 11.479 16.640 Atomic orbital electron populations 1.30017 1.17521 1.14638 1.15040 1.05377 0.80998 0.73344 0.72369 1.93563 1.80120 1.37365 1.85487 1.93571 1.79904 1.62041 1.60348 1.30721 1.19121 1.02875 1.26018 1.20828 0.87713 0.99659 0.89172 1.19402 1.05071 0.95619 0.94415 1.21444 0.80944 0.86497 0.83205 1.90623 1.56974 1.21084 1.79036 1.83879 1.63279 1.43503 1.22495 1.21489 1.37163 0.95878 0.95120 0.89821 1.26530 0.97007 0.98914 0.97496 1.70012 1.43840 1.17506 1.21329 0.84682 0.78251 0.77069 0.76387 1.18767 1.18071 1.18527 1.21793 0.88839 0.90565 0.99927 1.21509 1.01549 1.03288 0.91431 1.17261 0.90047 0.86432 0.87417 1.91615 1.77450 1.73018 1.66571 0.82459 0.82658 0.81415 0.82902 0.90778 0.82758 0.79177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.32 10.79 113.37 1.22 -4.10 15 2 S 2.50 54.24 5.44 -56.49 -0.31 53.93 15 3 O -0.97 -28.41 16.73 -127.65 -2.14 -30.54 15 4 O -0.96 -26.42 17.34 -127.65 -2.21 -28.63 15 5 C -0.70 -18.66 5.58 22.27 0.12 -18.54 15 6 C 0.05 1.55 9.04 22.53 0.20 1.76 15 7 C -0.14 -5.63 5.87 -20.09 -0.12 -5.74 15 8 C 0.43 22.20 7.83 70.28 0.55 22.75 15 9 O -0.58 -32.73 15.59 19.77 0.31 -32.42 15 10 O -0.22 -12.87 8.99 11.11 0.10 -12.77 15 11 C -0.42 -25.07 9.65 67.96 0.66 -24.41 15 12 H 0.08 5.08 6.86 -2.91 -0.02 5.06 15 13 C 0.00 0.13 5.49 84.89 0.47 0.60 15 14 N -0.89 -50.10 13.67 21.63 0.30 -49.81 15 15 Si 1.02 42.05 29.55 68.60 2.03 44.08 15 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 17 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15 19 C 0.01 0.23 9.61 22.53 0.22 0.44 15 20 C -0.16 -3.69 10.01 22.27 0.22 -3.47 15 21 C 0.21 4.88 7.20 22.48 0.16 5.04 15 22 F -0.11 -2.11 15.71 44.97 0.71 -1.40 15 23 H 0.16 0.90 8.14 -2.39 -0.02 0.88 15 24 H 0.16 0.83 7.57 -2.39 -0.02 0.81 15 25 H 0.17 0.56 8.14 -2.39 -0.02 0.54 15 26 H 0.15 5.60 6.79 -2.91 -0.02 5.58 15 27 H 0.28 14.38 8.31 -92.71 -0.77 13.61 15 28 H 0.15 5.12 7.61 -2.92 -0.02 5.09 15 29 H 0.19 2.88 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -81.09 286.90 3.70 -77.40 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.21 Total: 5.85 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.71 Total: -25.67 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.30 Total: -49.81 kcal Atomic # 8 Polarization: -100.43 SS G_CDS: -3.94 Total: -104.37 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.71 Total: -1.40 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 54.24 SS G_CDS: -0.31 Total: 53.93 kcal Total: -81.09 3.70 -77.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792476130.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.238 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds