Wall clock time and date at job start Tue Mar 31 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46922 * 2 1 4 4 C 1.47014 * 111.00019 * 66.05054 * 3 2 1 5 5 C 1.53096 * 109.25675 * 182.39166 * 4 3 2 6 6 O 1.43015 * 109.25724 * 303.14825 * 5 4 3 7 7 C 1.43010 * 113.73980 * 58.67537 * 6 5 4 8 8 H 1.08993 * 109.51045 * 61.26026 * 7 6 5 9 9 C 1.50705 * 109.51080 * 181.39347 * 7 6 5 10 10 O 1.20824 * 119.99428 * 5.00022 * 9 7 6 11 11 O 1.34223 * 120.00321 * 184.99811 * 9 7 6 12 12 C 1.45200 * 117.00356 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47348 * 179.97438 * 12 11 9 14 14 O 1.42904 * 109.47296 * 65.00063 * 13 12 11 15 15 C 1.42901 * 113.99996 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46661 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99487 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99795 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47400 * 120.00083 * 20 18 16 23 23 H 1.48501 * 109.47207 * 240.00017 * 20 18 16 24 24 C 1.47017 * 110.99765 * 189.68430 * 3 2 1 25 25 H 1.09003 * 109.46557 * 299.99423 * 1 2 3 26 26 H 1.08992 * 109.47213 * 59.99766 * 1 2 3 27 27 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46615 * 240.00023 * 2 1 3 29 29 H 1.09000 * 109.47117 * 120.00506 * 2 1 3 30 30 H 1.09004 * 109.50706 * 62.45483 * 4 3 2 31 31 H 1.08995 * 109.54210 * 302.34427 * 4 3 2 32 32 H 1.08997 * 109.50375 * 183.21864 * 5 4 3 33 33 H 1.08996 * 109.54637 * 63.10402 * 5 4 3 34 34 H 1.09000 * 109.46910 * 299.99966 * 12 11 9 35 35 H 1.09002 * 109.46855 * 59.99343 * 12 11 9 36 36 H 1.09002 * 109.47354 * 184.99634 * 13 12 11 37 37 H 1.09003 * 109.47294 * 304.99684 * 13 12 11 38 38 H 1.09005 * 109.46945 * 299.99294 * 15 14 13 39 39 H 1.09000 * 109.47574 * 59.99251 * 15 14 13 40 40 H 0.96998 * 120.00073 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.50736 * 297.54404 * 24 3 2 42 42 H 1.08995 * 109.50709 * 57.63009 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.1453 3.5212 1.1877 6 8 3.5521 3.5462 0.9317 7 6 3.9281 2.8910 -0.2825 8 1 3.4548 3.3908 -1.1276 9 6 5.4260 2.9439 -0.4401 10 8 6.1102 3.4058 0.4422 11 8 5.9999 2.4779 -1.5604 12 6 7.4472 2.5603 -1.6430 13 6 7.9152 1.9849 -2.9812 14 8 7.4285 2.8023 -4.0475 15 6 7.8109 2.3496 -5.3479 16 6 7.2457 3.2802 -6.3899 17 1 6.6536 4.1318 -6.0892 18 6 7.4849 3.0443 -7.7272 19 7 8.2065 2.0075 -8.0933 20 14 6.7838 4.1973 -9.0189 21 1 6.0139 5.2780 -8.3522 22 1 7.8937 4.7926 -9.8058 23 1 5.8861 3.4376 -9.9257 24 6 3.4708 1.4307 -0.2309 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1553 1.5637 2.0903 31 1 0.5891 2.0439 1.3931 32 1 1.9393 4.0153 2.1371 33 1 1.6202 4.0402 0.3858 34 1 7.7567 3.6027 -1.5672 35 1 7.8908 1.9894 -0.8273 36 1 9.0047 1.9649 -3.0070 37 1 7.5304 0.9715 -3.0954 38 1 8.8982 2.3369 -5.4230 39 1 7.4236 1.3439 -5.5110 40 1 8.3744 1.8414 -9.0341 41 1 3.9850 0.9168 0.5814 42 1 3.7045 0.9418 -1.1766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815215695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:30 Heat of formation + Delta-G solvation = -169.865346 kcal Electronic energy + Delta-G solvation = -22999.383299 eV Core-core repulsion = 19366.175462 eV Total energy + Delta-G solvation = -3633.207837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76950 -39.49022 -37.11935 -36.50112 -35.90680 -32.79669 -32.21140 -31.23033 -30.08680 -27.53948 -26.84109 -24.80755 -23.34059 -22.44335 -22.08343 -21.01666 -20.62798 -17.88309 -17.20210 -16.68624 -16.44539 -16.39382 -15.90257 -15.68106 -15.51585 -14.93399 -14.71636 -14.56303 -14.36272 -14.13299 -13.76751 -13.26155 -12.92862 -12.61994 -12.38891 -12.25733 -12.08986 -11.94310 -11.79340 -11.44736 -11.21710 -11.11329 -10.92195 -10.87249 -10.73444 -10.41148 -10.23802 -10.05258 -10.02259 -9.12187 -8.89132 -8.79934 -8.22497 -6.12644 -4.14183 2.16149 2.30261 3.29069 3.33333 3.35605 3.42440 3.81483 4.31984 4.38630 4.51583 4.55585 4.67452 4.74562 4.78042 4.88188 4.94647 5.07723 5.14114 5.19818 5.24164 5.26120 5.31139 5.43096 5.44385 5.53390 5.54269 5.63252 5.83941 5.86757 5.90078 6.05091 6.49738 6.52619 6.57098 6.71548 7.04088 7.38636 7.77750 7.81431 8.11645 8.51172 8.98847 9.50743 10.98962 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.003213 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.813176 B = 8713.311431 C = 9464.073586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.011 3.989 5 C 0.065 3.935 6 O -0.361 6.361 7 C 0.105 3.895 8 H 0.110 0.890 9 C 0.468 3.532 10 O -0.494 6.494 11 O -0.336 6.336 12 C 0.075 3.925 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.068 0.932 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.031 3.969 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 -3.894 18.984 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.260 5.260 4 C -0.117 4.117 5 C -0.012 4.012 6 O -0.280 6.280 7 C 0.046 3.954 8 H 0.128 0.872 9 C 0.309 3.691 10 O -0.380 6.380 11 O -0.252 6.252 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.310 6.310 15 C 0.120 3.880 16 C -0.552 4.552 17 H 0.086 0.914 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.222 -3.353 18.833 23.254 hybrid contribution 0.261 -0.303 -0.231 0.462 sum -12.960 -3.656 18.603 22.965 Atomic orbital electron populations 1.21802 0.94455 1.01822 1.02578 1.22124 0.96375 0.87888 1.01373 1.62232 1.12569 1.16857 1.34373 1.22909 1.02144 0.95740 0.90917 1.22778 0.80749 0.95250 1.02435 1.88065 1.23821 1.76615 1.39459 1.21376 0.89072 0.94526 0.90424 0.87201 1.22890 0.90662 0.75220 0.80326 1.90666 1.64609 1.41219 1.41528 1.86562 1.25220 1.74436 1.39004 1.23274 0.75675 1.03051 0.97818 1.22323 0.97491 0.95035 0.86716 1.87925 1.76002 1.51435 1.15686 1.20248 0.94746 0.95406 0.77612 1.21095 1.32834 1.11360 0.89954 0.91414 1.24952 0.95285 0.95831 0.98453 1.69970 1.38977 1.27956 1.16918 0.86273 0.78769 0.80567 0.80856 1.19431 1.20844 1.20810 1.22647 0.88337 0.95161 1.03574 0.92753 0.91500 0.92045 0.90035 0.94648 0.93701 0.88917 0.87634 0.91560 0.90274 0.90313 0.91802 0.93142 0.97593 0.97475 0.92687 0.93326 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.84 37.16 0.37 -0.59 16 2 C 0.05 0.39 5.68 -3.82 -0.02 0.37 16 3 N -0.53 -5.07 4.73 -234.30 -1.11 -6.17 16 4 C 0.01 0.09 5.43 -3.71 -0.02 0.07 16 5 C 0.06 0.57 7.01 37.21 0.26 0.83 16 6 O -0.36 -4.72 10.01 -55.10 -0.55 -5.27 16 7 C 0.11 1.36 3.33 -27.83 -0.09 1.26 16 8 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 9 C 0.47 7.38 7.29 36.01 0.26 7.64 16 10 O -0.49 -8.98 16.26 -25.45 -0.41 -9.39 16 11 O -0.34 -5.60 10.19 -42.00 -0.43 -6.03 16 12 C 0.08 1.20 5.84 37.15 0.22 1.41 16 13 C 0.06 1.12 6.33 37.15 0.24 1.35 16 14 O -0.39 -9.42 10.30 -38.80 -0.40 -9.82 16 15 C 0.19 5.28 5.69 36.01 0.20 5.49 16 16 C -0.51 -15.15 9.43 -34.44 -0.32 -15.47 16 17 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 20 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.03 0.34 4.91 -3.71 -0.02 0.32 16 25 H 0.05 0.32 6.51 -51.93 -0.34 -0.02 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 29 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.58 6.37 -51.93 -0.33 0.25 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -33.95 350.95 -7.89 -41.85 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -6.97 Total: -5.44 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 0.97 Total: 4.20 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: -0.37 Total: -32.18 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.79 Total: -30.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.95 -7.89 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.018 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds