Wall clock time and date at job start Tue Mar 31 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46922 * 2 1 4 4 C 1.47014 * 111.00019 * 66.05054 * 3 2 1 5 5 C 1.53096 * 109.25675 * 182.39166 * 4 3 2 6 6 O 1.43015 * 109.25724 * 303.14825 * 5 4 3 7 7 C 1.43010 * 113.73980 * 58.67537 * 6 5 4 8 8 H 1.08993 * 109.51045 * 61.26026 * 7 6 5 9 9 C 1.50705 * 109.51080 * 181.39347 * 7 6 5 10 10 O 1.20824 * 119.99428 * 5.00022 * 9 7 6 11 11 O 1.34223 * 120.00321 * 184.99811 * 9 7 6 12 12 C 1.45200 * 117.00356 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47348 * 179.97438 * 12 11 9 14 14 O 1.42904 * 109.47296 * 65.00063 * 13 12 11 15 15 C 1.42901 * 113.99996 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46661 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99487 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99795 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47202 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47400 * 120.00083 * 20 18 16 23 23 H 1.48501 * 109.47207 * 240.00017 * 20 18 16 24 24 C 1.47017 * 110.99765 * 189.68430 * 3 2 1 25 25 H 1.09003 * 109.46557 * 299.99423 * 1 2 3 26 26 H 1.08992 * 109.47213 * 59.99766 * 1 2 3 27 27 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46615 * 240.00023 * 2 1 3 29 29 H 1.09000 * 109.47117 * 120.00506 * 2 1 3 30 30 H 1.09004 * 109.50706 * 62.45483 * 4 3 2 31 31 H 1.08995 * 109.54210 * 302.34427 * 4 3 2 32 32 H 1.08997 * 109.50375 * 183.21864 * 5 4 3 33 33 H 1.08996 * 109.54637 * 63.10402 * 5 4 3 34 34 H 1.09000 * 109.46910 * 299.99966 * 12 11 9 35 35 H 1.09002 * 109.46855 * 59.99343 * 12 11 9 36 36 H 1.09002 * 109.47354 * 184.99634 * 13 12 11 37 37 H 1.09003 * 109.47294 * 304.99684 * 13 12 11 38 38 H 1.09005 * 109.46945 * 299.99294 * 15 14 13 39 39 H 1.09000 * 109.47574 * 59.99251 * 15 14 13 40 40 H 0.96998 * 120.00073 * 179.97438 * 19 18 16 41 41 H 1.09006 * 109.50736 * 297.54404 * 24 3 2 42 42 H 1.08995 * 109.50709 * 57.63009 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.1453 3.5212 1.1877 6 8 3.5521 3.5462 0.9317 7 6 3.9281 2.8910 -0.2825 8 1 3.4548 3.3908 -1.1276 9 6 5.4260 2.9439 -0.4401 10 8 6.1102 3.4058 0.4422 11 8 5.9999 2.4779 -1.5604 12 6 7.4472 2.5603 -1.6430 13 6 7.9152 1.9849 -2.9812 14 8 7.4285 2.8023 -4.0475 15 6 7.8109 2.3496 -5.3479 16 6 7.2457 3.2802 -6.3899 17 1 6.6536 4.1318 -6.0892 18 6 7.4849 3.0443 -7.7272 19 7 8.2065 2.0075 -8.0933 20 14 6.7838 4.1973 -9.0189 21 1 6.0139 5.2780 -8.3522 22 1 7.8937 4.7926 -9.8058 23 1 5.8861 3.4376 -9.9257 24 6 3.4708 1.4307 -0.2309 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.1553 1.5637 2.0903 31 1 0.5891 2.0439 1.3931 32 1 1.9393 4.0153 2.1371 33 1 1.6202 4.0402 0.3858 34 1 7.7567 3.6027 -1.5672 35 1 7.8908 1.9894 -0.8273 36 1 9.0047 1.9649 -3.0070 37 1 7.5304 0.9715 -3.0954 38 1 8.8982 2.3369 -5.4230 39 1 7.4236 1.3439 -5.5110 40 1 8.3744 1.8414 -9.0341 41 1 3.9850 0.9168 0.5814 42 1 3.7045 0.9418 -1.1766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815215695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:30 Heat of formation + Delta-G solvation = -193.354341 kcal Electronic energy + Delta-G solvation = -23000.401858 eV Core-core repulsion = 19366.175462 eV Total energy + Delta-G solvation = -3634.226397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91571 -40.46234 -38.75012 -37.64319 -37.07949 -34.94791 -33.15601 -31.87256 -31.55809 -29.11065 -28.19558 -25.64975 -24.61654 -24.22209 -23.29932 -22.03589 -21.49549 -19.06143 -18.72411 -18.16130 -18.00812 -17.33714 -17.13990 -16.95466 -16.48534 -16.29308 -16.19607 -15.77929 -15.53849 -15.24678 -14.86630 -14.47790 -14.23242 -13.94416 -13.69410 -13.24052 -13.10583 -12.90584 -12.89970 -12.79325 -12.71865 -12.53085 -12.45367 -12.04596 -11.88183 -11.81963 -11.78445 -11.37401 -11.26336 -10.90040 -10.87961 -10.27071 -9.51764 -8.32186 -6.44048 0.92845 1.18171 1.41355 1.42284 1.57186 2.35160 2.56872 2.91709 3.01939 3.05106 3.47271 3.53461 3.81605 3.89156 3.89728 4.00406 4.08966 4.23511 4.26947 4.38311 4.45559 4.48845 4.51191 4.55527 4.63720 4.65109 4.70229 4.85701 4.86554 4.98732 5.08546 5.17641 5.25056 5.35370 5.55128 5.76637 5.88175 5.93046 5.95504 6.49266 6.57080 6.80063 7.27625 8.80184 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.003213 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.813176 B = 8713.311431 C = 9464.073586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.542 5.542 4 C 0.013 3.987 5 C 0.058 3.942 6 O -0.386 6.386 7 C 0.109 3.891 8 H 0.115 0.885 9 C 0.470 3.530 10 O -0.521 6.521 11 O -0.348 6.348 12 C 0.077 3.923 13 C 0.054 3.946 14 O -0.410 6.410 15 C 0.208 3.792 16 C -0.550 4.550 17 H 0.060 0.940 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.270 1.270 24 C 0.038 3.962 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.060 0.940 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.271 0.729 41 H 0.045 0.955 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.753 -3.768 19.188 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.268 5.268 4 C -0.114 4.114 5 C -0.018 4.018 6 O -0.305 6.305 7 C 0.050 3.950 8 H 0.132 0.868 9 C 0.312 3.688 10 O -0.410 6.410 11 O -0.264 6.264 12 C 0.004 3.996 13 C -0.022 4.022 14 O -0.330 6.330 15 C 0.133 3.867 16 C -0.587 4.587 17 H 0.078 0.922 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.805 3.195 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.090 4.090 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.654 -3.243 19.058 24.258 hybrid contribution 0.704 -0.381 -0.200 0.825 sum -13.950 -3.624 18.857 23.735 Atomic orbital electron populations 1.21769 0.93160 1.02615 1.02599 1.22197 0.97377 0.86985 1.01415 1.62269 1.11275 1.17976 1.35308 1.22957 1.03434 0.94916 0.90127 1.23079 0.78736 0.96195 1.03771 1.88033 1.26347 1.76854 1.39277 1.21383 0.86893 0.95924 0.90811 0.86796 1.23477 0.91785 0.74063 0.79426 1.90642 1.65479 1.42560 1.42297 1.86559 1.25601 1.74585 1.39676 1.23283 0.75792 1.03109 0.97390 1.22648 0.98864 0.94923 0.85781 1.87868 1.76592 1.52894 1.15633 1.19878 0.93516 0.94208 0.79090 1.21421 1.33924 1.11965 0.91434 0.92214 1.25926 0.95161 0.97444 1.00537 1.70061 1.39472 1.29327 1.17959 0.85153 0.78354 0.78319 0.77689 1.18996 1.19652 1.19540 1.22526 0.89532 0.93578 1.03383 0.91880 0.92250 0.90924 0.90394 0.94253 0.93977 0.86627 0.85422 0.90990 0.90936 0.87120 0.89794 0.92195 0.98976 0.99107 0.91992 0.93692 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.84 71.98 0.71 -0.86 16 2 C 0.05 0.67 5.68 86.30 0.49 1.16 16 3 N -0.54 -9.56 4.73 -895.19 -4.23 -13.79 16 4 C 0.01 0.19 5.43 86.31 0.47 0.66 16 5 C 0.06 0.93 7.01 72.01 0.50 1.44 16 6 O -0.39 -9.84 10.01 -129.98 -1.30 -11.14 16 7 C 0.11 2.78 3.33 29.88 0.10 2.88 16 8 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 9 C 0.47 14.83 7.29 71.24 0.52 15.35 16 10 O -0.52 -19.00 16.26 28.38 0.46 -18.54 16 11 O -0.35 -11.57 10.19 -48.70 -0.50 -12.07 16 12 C 0.08 2.42 5.84 71.98 0.42 2.84 16 13 C 0.05 1.95 6.33 71.98 0.46 2.41 16 14 O -0.41 -20.05 10.30 -145.57 -1.50 -21.55 16 15 C 0.21 11.58 5.69 71.24 0.41 11.99 16 16 C -0.55 -32.85 9.43 25.60 0.24 -32.61 16 17 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 18 C 0.01 0.46 5.46 84.66 0.46 0.92 16 19 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 20 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.04 0.82 4.91 86.32 0.42 1.24 16 25 H 0.06 0.57 6.51 -2.39 -0.02 0.56 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 29 H 0.04 0.53 8.12 -2.39 -0.02 0.51 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.12 1.12 6.37 -2.39 -0.02 1.11 16 32 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.11 2.76 8.13 -2.39 -0.02 2.75 16 36 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.10 2.21 8.09 -2.39 -0.02 2.19 16 Total: -1.00 -72.63 350.95 1.43 -71.20 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.99 Total: 7.18 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.20 Total: 7.42 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -3.95 Total: -68.84 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -2.83 Total: -63.30 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.63 1.43 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.157 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds