Wall clock time and date at job start Tue Mar 31 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47395 * 2 1 4 4 O 1.34261 * 126.52235 * 269.97627 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36059 * 108.48127 * 0.02562 * 6 5 4 8 8 C 1.47419 * 126.45311 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99976 * 0.02562 * 8 7 6 11 11 S 1.65600 * 120.00144 * 180.02562 * 10 8 7 12 12 O 1.42093 * 104.27503 * 181.07170 * 11 10 8 13 13 O 1.42106 * 104.27605 * 308.92997 * 11 10 8 14 14 C 1.81397 * 104.45075 * 64.99897 * 11 10 8 15 15 C 1.50696 * 109.47185 * 180.02562 * 14 11 10 16 16 H 1.07999 * 120.00266 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99836 * 180.02562 * 15 14 11 18 18 N 1.31510 * 120.00153 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99760 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46892 * 59.99641 * 19 17 15 21 21 H 1.48500 * 109.46820 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47028 * 300.00085 * 19 17 15 23 23 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47189 * 300.00300 * 1 2 3 25 25 H 1.08998 * 109.46877 * 59.99613 * 1 2 3 26 26 H 1.09000 * 109.46754 * 239.99864 * 2 1 3 27 27 H 1.09003 * 109.46981 * 119.99654 * 2 1 3 28 28 H 1.08002 * 125.38061 * 180.02562 * 5 4 3 29 29 H 0.96999 * 119.99524 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.47188 * 300.00005 * 14 11 10 31 31 H 1.08999 * 109.47347 * 59.99542 * 14 11 10 32 32 H 0.97002 * 119.99895 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1739 -1.0790 5 6 2.7228 3.3741 -0.6582 6 7 2.7286 3.3948 0.6410 7 6 2.3011 2.1850 1.0936 8 6 2.1566 1.7783 2.5031 9 8 1.7623 0.6607 2.7762 10 7 2.4613 2.6450 3.4893 11 16 2.2995 2.1880 5.0727 12 8 2.6781 3.3417 5.8108 13 8 0.9800 1.6667 5.1539 14 6 3.5212 0.8647 5.2890 15 6 3.4691 0.3600 6.7080 16 1 2.7712 0.7923 7.4097 17 6 4.3132 -0.6531 7.1107 18 7 5.1634 -1.1793 6.2564 19 14 4.2492 -1.2783 8.8699 20 1 2.8915 -1.8064 9.1584 21 1 5.2492 -2.3617 9.0469 22 1 4.5553 -0.1641 9.8026 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0126 4.1946 -1.2979 29 1 2.7754 3.5365 3.2714 30 1 3.2960 0.0469 4.6044 31 1 4.5177 1.2519 5.0770 32 1 5.7570 -1.8923 6.5397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821583867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:45 Heat of formation + Delta-G solvation = -127.556675 kcal Electronic energy + Delta-G solvation = -20956.462351 eV Core-core repulsion = 17430.749926 eV Total energy + Delta-G solvation = -3525.712425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -44.55836 -41.06349 -38.15744 -37.10988 -36.20565 -35.51106 -35.44698 -35.02823 -31.13773 -30.42047 -26.34814 -25.58284 -24.66873 -23.20314 -21.95570 -20.76812 -19.81401 -19.17286 -18.36466 -17.99165 -17.55545 -17.48483 -16.59796 -16.28394 -16.25826 -15.97126 -15.82430 -15.26424 -14.53818 -14.49330 -14.17183 -13.73312 -13.60218 -13.50969 -13.25637 -13.15455 -12.72574 -12.70119 -12.60049 -12.52760 -12.27876 -12.08986 -11.97715 -11.85030 -11.51514 -11.11821 -10.79307 -10.10285 -8.43271 -6.63148 -0.81791 -0.18955 0.85483 1.36676 1.40340 1.42571 1.50559 1.61122 1.86427 2.30021 2.66894 2.81233 2.90676 3.23644 3.44267 3.47904 3.87440 4.05084 4.17165 4.23282 4.51389 4.60995 4.71693 4.72926 4.94306 5.08742 5.13994 5.26581 5.27756 5.53108 5.66599 6.18797 6.45311 6.48101 7.08732 8.69641 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.004855 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.365492 B = 5766.273182 C = 6183.856529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C 0.070 3.930 4 O -0.189 6.189 5 C 0.207 3.793 6 N -0.495 5.495 7 C -0.113 4.113 8 C 0.620 3.380 9 O -0.510 6.510 10 N -1.036 6.036 11 S 2.598 3.402 12 O -0.977 6.977 13 O -0.978 6.978 14 C -0.416 4.416 15 C -0.570 4.570 16 H 0.070 0.930 17 C 0.027 3.973 18 N -0.908 5.908 19 Si 0.969 3.031 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.259 1.259 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.313 0.687 29 H 0.445 0.555 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 6.012 -18.325 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C 0.012 3.988 4 O -0.076 6.076 5 C -0.021 4.021 6 N -0.223 5.223 7 C -0.232 4.232 8 C 0.408 3.592 9 O -0.384 6.384 10 N -0.799 5.799 11 S 2.698 3.302 12 O -0.968 6.968 13 O -0.968 6.968 14 C -0.551 4.551 15 C -0.609 4.609 16 H 0.088 0.912 17 C -0.177 4.177 18 N -0.544 5.544 19 Si 0.790 3.210 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.183 1.183 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.328 0.672 29 H 0.283 0.717 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.340 6.014 -17.209 18.739 hybrid contribution 0.681 -0.489 0.183 0.858 sum -3.660 5.525 -17.026 18.270 Atomic orbital electron populations 1.21711 0.92140 1.04104 1.02014 1.20579 0.97835 0.84517 1.06379 1.24086 0.95729 0.95867 0.83115 1.84445 1.63524 1.24556 1.35038 1.29316 0.95301 0.87064 0.90451 1.70661 1.18855 1.20399 1.12346 1.20972 1.14707 0.93845 0.93707 1.17026 0.74240 0.83291 0.84618 1.90973 1.43882 1.19866 1.83673 1.54823 1.73533 1.25602 1.25914 1.05598 0.76705 0.76205 0.71675 1.93498 1.85296 1.49128 1.68859 1.93489 1.37280 1.81592 1.84442 1.27631 1.10528 1.11499 1.05485 1.20691 1.23896 1.22717 0.93549 0.91230 1.25881 0.93506 0.95173 1.03125 1.70032 1.21523 1.25712 1.37148 0.85446 0.79034 0.78725 0.77785 1.18764 1.19221 1.18316 0.89314 0.94322 0.90730 0.86165 0.88382 0.67224 0.71659 0.89811 0.89747 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.06 -1.17 5.93 29.85 0.18 -0.99 16 3 C 0.07 1.66 6.69 25.19 0.17 1.83 16 4 O -0.19 -3.26 10.73 0.37 0.00 -3.26 16 5 C 0.21 2.90 13.19 130.52 1.72 4.62 16 6 N -0.49 -11.78 11.06 -305.16 -3.37 -15.15 16 7 C -0.11 -3.30 6.99 40.41 0.28 -3.02 16 8 C 0.62 22.93 7.55 86.66 0.65 23.59 16 9 O -0.51 -21.56 12.90 12.32 0.16 -21.40 16 10 N -1.04 -38.04 5.60 -175.88 -0.99 -39.02 16 11 S 2.60 118.96 5.03 -56.49 -0.28 118.67 16 12 O -0.98 -46.55 18.08 -127.65 -2.31 -48.86 16 13 O -0.98 -50.19 17.04 -120.72 -2.06 -52.25 16 14 C -0.42 -21.73 5.64 71.23 0.40 -21.33 16 15 C -0.57 -32.82 9.13 25.60 0.23 -32.58 16 16 H 0.07 3.89 7.71 -2.91 -0.02 3.87 16 17 C 0.03 1.51 5.46 84.66 0.46 1.97 16 18 N -0.91 -52.78 13.29 21.45 0.28 -52.49 16 19 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 2.58 6.48 -2.39 -0.02 2.57 16 28 H 0.31 0.11 8.06 -2.91 -0.02 0.09 16 29 H 0.44 13.54 8.52 -96.74 -0.82 12.72 16 30 H 0.08 4.57 7.19 -2.39 -0.02 4.55 16 31 H 0.08 4.31 8.14 -2.39 -0.02 4.29 16 32 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -79.46 302.03 -1.37 -80.83 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.35 Total: 15.66 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 4.81 Total: -27.96 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -4.07 Total: -106.67 kcal Atomic # 8 Polarization: -121.56 SS G_CDS: -4.20 Total: -125.77 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 118.96 SS G_CDS: -0.28 Total: 118.67 kcal Total: -79.46 -1.37 -80.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.729 kcal (2) G-P(sol) polarization free energy of solvation -79.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds