Wall clock time and date at job start Tue Mar 31 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29363 * 1 3 3 Si 1.86810 * 120.00192 * 2 1 4 4 H 1.48500 * 109.46548 * 269.99785 * 3 2 1 5 5 H 1.48493 * 109.46993 * 29.99349 * 3 2 1 6 6 H 1.48500 * 109.46950 * 149.99912 * 3 2 1 7 7 C 1.46629 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.22315 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.35726 * 117.00033 * 185.09594 * 9 7 2 11 11 C 1.38938 * 120.06908 * 354.27507 * 10 9 7 12 12 C 1.38067 * 119.92124 * 179.72177 * 11 10 9 13 13 C 1.38323 * 120.07514 * 0.53103 * 12 11 10 14 14 S 1.76201 * 119.92989 * 179.74186 * 13 12 11 15 15 N 1.65599 * 107.22324 * 270.02645 * 14 13 12 16 16 O 1.42106 * 106.40186 * 23.56296 * 14 13 12 17 17 O 1.42097 * 106.40554 * 156.47921 * 14 13 12 18 18 C 1.38290 * 120.14834 * 359.76565 * 13 12 11 19 19 C 1.38111 * 120.06293 * 359.95685 * 18 13 12 20 20 N 1.48023 * 120.03091 * 180.02562 * 19 18 13 21 21 O 1.31694 * 120.00144 * 359.97438 * 20 19 18 22 22 O 1.31698 * 119.99688 * 179.97438 * 20 19 18 23 23 H 0.97004 * 119.99693 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.03540 * 359.97060 * 11 10 9 25 25 H 1.08004 * 119.96100 * 180.27208 * 12 11 10 26 26 H 0.97010 * 119.99433 * 359.97438 * 15 14 13 27 27 H 0.96996 * 120.00140 * 180.02562 * 15 14 13 28 28 H 1.07996 * 119.96890 * 179.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0463 -1.4001 5 1 1.4252 2.6527 0.6999 6 1 3.5253 1.4401 0.7001 7 6 2.0268 -1.2699 0.0006 8 1 3.1068 -1.2699 0.0010 9 8 1.4152 -2.3291 0.0006 10 6 2.1502 -3.4650 0.1085 11 6 3.5379 -3.4003 0.0929 12 6 4.2827 -4.5571 0.2087 13 6 3.6486 -5.7806 0.3291 14 16 4.6028 -7.2552 0.4698 15 7 4.8649 -7.8180 -1.0654 16 8 5.8719 -6.8651 0.9762 17 8 3.7707 -8.2119 1.1114 18 6 2.2674 -5.8491 0.3388 19 6 1.5167 -4.6951 0.2291 20 7 0.0384 -4.7692 0.2401 21 8 -0.5617 -5.9359 0.3541 22 8 -0.6769 -3.6682 0.1360 23 1 -0.4850 0.8401 -0.0004 24 1 4.0335 -2.4459 -0.0056 25 1 5.3615 -4.5071 0.2011 26 1 4.5062 -7.3354 -1.8266 27 1 5.3763 -8.6305 -1.2033 28 1 1.7754 -6.8059 0.4326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822634236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:21 Heat of formation + Delta-G solvation = -32.901507 kcal Electronic energy + Delta-G solvation = -20572.030997 eV Core-core repulsion = 16914.590033 eV Total energy + Delta-G solvation = -3657.440963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.034 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.44774 -38.19365 -36.75516 -36.64239 -35.43518 -34.13731 -32.95127 -32.80303 -30.86762 -30.06970 -26.64604 -25.33363 -22.64162 -21.89988 -19.59278 -19.10935 -18.63176 -17.79542 -17.09935 -16.76722 -16.18734 -15.68248 -15.58471 -15.40809 -15.19654 -14.97406 -14.32069 -13.95509 -13.61911 -13.02106 -12.68794 -12.13712 -11.84782 -11.77901 -11.71794 -11.70625 -11.47198 -11.18467 -10.71313 -10.29633 -10.27522 -10.12388 -9.84517 -9.55148 -9.33594 -8.81506 -8.50078 -8.05107 -4.72794 0.55664 0.84802 1.36458 2.24601 2.33977 2.45949 2.51899 2.65221 2.99583 3.38683 3.60877 3.92674 4.00648 4.23432 4.97526 5.23251 5.42515 5.51351 5.76964 6.01522 6.10190 6.16064 6.24000 6.31984 6.64300 6.73825 7.02711 7.13537 7.18783 7.49056 8.32130 8.56688 9.00570 Molecular weight = 288.03amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.005376 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.542107 B = 5207.116420 C = 6337.505343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.252 1.252 5 H -0.258 1.258 6 H -0.245 1.245 7 C -0.286 4.286 8 H 0.124 0.876 9 O 0.006 5.994 10 C 0.022 3.978 11 C -0.199 4.199 12 C 0.001 3.999 13 C -0.785 4.785 14 S 2.712 3.288 15 N -1.256 6.256 16 O -0.979 6.979 17 O -0.979 6.979 18 C 0.116 3.884 19 C -0.082 4.082 20 N 0.024 4.976 21 O -0.319 6.319 22 O -0.236 6.236 23 H 0.315 0.685 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.416 0.584 27 H 0.413 0.587 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.596 1.180 -3.784 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.168 1.168 7 C -0.369 4.369 8 H 0.141 0.859 9 O 0.128 5.872 10 C -0.044 4.044 11 C -0.219 4.219 12 C -0.020 4.020 13 C -0.880 4.880 14 S 2.804 3.196 15 N -0.928 5.928 16 O -0.969 6.969 17 O -0.968 6.968 18 C 0.095 3.905 19 C -0.182 4.182 20 N 0.452 4.548 21 O -0.470 6.470 22 O -0.406 6.406 23 H 0.129 0.871 24 H 0.155 0.845 25 H 0.150 0.850 26 H 0.242 0.758 27 H 0.241 0.759 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.587 0.906 -2.810 10.031 hybrid contribution -0.479 1.092 -0.816 1.444 sum 9.107 1.998 -3.626 10.004 Atomic orbital electron populations 1.68978 1.08681 1.33516 1.19941 1.27936 0.95950 1.00693 0.95032 0.85253 0.79982 0.75382 0.80853 1.17642 1.18200 1.16838 1.22624 0.95459 0.82924 1.35943 0.85881 1.80472 1.39121 1.12884 1.54712 1.18172 0.89805 0.83434 1.12980 1.20540 0.91203 0.99204 1.10933 1.20163 0.98783 0.90159 0.92858 1.29246 1.04268 1.17136 1.37355 1.00846 0.73440 0.73195 0.72085 1.53257 1.72423 1.40175 1.26963 1.93538 1.41960 1.83532 1.77832 1.93564 1.69095 1.60861 1.73294 1.20262 0.91678 0.96978 0.81605 1.18841 0.76657 0.93682 1.29033 1.49799 1.03674 1.02064 0.99294 1.96117 1.74706 1.11878 1.64302 1.96258 1.65405 1.19716 1.59252 0.87136 0.84526 0.85041 0.75777 0.75864 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -14.47 13.66 55.99 0.76 -13.71 15 2 C 0.03 0.65 5.69 -15.21 -0.09 0.57 15 3 Si 0.97 13.03 29.64 -169.99 -5.04 7.99 15 4 H -0.25 -3.30 7.11 56.52 0.40 -2.90 15 5 H -0.26 -3.38 7.11 56.52 0.40 -2.98 15 6 H -0.25 -3.18 7.11 56.52 0.40 -2.77 15 7 C -0.29 -5.90 9.48 34.12 0.32 -5.58 15 8 H 0.12 2.15 5.03 -52.48 -0.26 1.88 15 9 O 0.01 0.15 7.21 -1.14 -0.01 0.14 15 10 C 0.02 0.49 6.58 -39.08 -0.26 0.23 15 11 C -0.20 -3.71 9.12 -39.38 -0.36 -4.07 15 12 C 0.00 0.02 9.51 -39.61 -0.38 -0.36 15 13 C -0.79 -13.82 5.95 -39.53 -0.24 -14.05 15 14 S 2.71 41.01 6.28 -107.50 -0.68 40.34 15 15 N -1.26 -13.12 9.55 60.35 0.58 -12.54 15 16 O -0.98 -16.87 17.28 -57.17 -0.99 -17.85 15 17 O -0.98 -18.00 17.28 -57.17 -0.99 -18.99 15 18 C 0.12 2.39 9.05 -39.61 -0.36 2.03 15 19 C -0.08 -1.96 6.90 -79.75 -0.55 -2.51 15 20 N 0.02 0.64 4.98 34.06 0.17 0.81 15 21 O -0.32 -8.67 19.15 -31.56 -0.60 -9.27 15 22 O -0.24 -6.82 17.90 -39.21 -0.70 -7.52 15 23 H 0.31 5.53 8.26 -40.82 -0.34 5.19 15 24 H 0.14 2.17 5.69 -52.49 -0.30 1.87 15 25 H 0.13 1.88 7.61 -52.48 -0.40 1.48 15 26 H 0.42 3.61 8.92 -34.47 -0.31 3.31 15 27 H 0.41 3.33 8.96 -34.47 -0.31 3.02 15 28 H 0.15 2.97 7.13 -52.49 -0.37 2.59 15 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -33.19 278.12 -6.29 -39.48 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -1.09 Total: 10.68 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.90 Total: -23.74 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 1.51 Total: -25.44 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -3.29 Total: -53.50 kcal Atomic # 14 Polarization: 13.03 SS G_CDS: -5.04 Total: 7.99 kcal Atomic # 16 Polarization: 41.01 SS G_CDS: -0.68 Total: 40.34 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.19 -6.29 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822634236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.580 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds