Wall clock time and date at job start Tue Mar 31 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29363 * 1 3 3 Si 1.86810 * 120.00192 * 2 1 4 4 H 1.48500 * 109.46548 * 269.99785 * 3 2 1 5 5 H 1.48493 * 109.46993 * 29.99349 * 3 2 1 6 6 H 1.48500 * 109.46950 * 149.99912 * 3 2 1 7 7 C 1.46629 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.22315 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.35726 * 117.00033 * 185.09594 * 9 7 2 11 11 C 1.38938 * 120.06908 * 354.27507 * 10 9 7 12 12 C 1.38067 * 119.92124 * 179.72177 * 11 10 9 13 13 C 1.38323 * 120.07514 * 0.53103 * 12 11 10 14 14 S 1.76201 * 119.92989 * 179.74186 * 13 12 11 15 15 N 1.65599 * 107.22324 * 270.02645 * 14 13 12 16 16 O 1.42106 * 106.40186 * 23.56296 * 14 13 12 17 17 O 1.42097 * 106.40554 * 156.47921 * 14 13 12 18 18 C 1.38290 * 120.14834 * 359.76565 * 13 12 11 19 19 C 1.38111 * 120.06293 * 359.95685 * 18 13 12 20 20 N 1.48023 * 120.03091 * 180.02562 * 19 18 13 21 21 O 1.31694 * 120.00144 * 359.97438 * 20 19 18 22 22 O 1.31698 * 119.99688 * 179.97438 * 20 19 18 23 23 H 0.97004 * 119.99693 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.03540 * 359.97060 * 11 10 9 25 25 H 1.08004 * 119.96100 * 180.27208 * 12 11 10 26 26 H 0.97010 * 119.99433 * 359.97438 * 15 14 13 27 27 H 0.96996 * 120.00140 * 180.02562 * 15 14 13 28 28 H 1.07996 * 119.96890 * 179.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0463 -1.4001 5 1 1.4252 2.6527 0.6999 6 1 3.5253 1.4401 0.7001 7 6 2.0268 -1.2699 0.0006 8 1 3.1068 -1.2699 0.0010 9 8 1.4152 -2.3291 0.0006 10 6 2.1502 -3.4650 0.1085 11 6 3.5379 -3.4003 0.0929 12 6 4.2827 -4.5571 0.2087 13 6 3.6486 -5.7806 0.3291 14 16 4.6028 -7.2552 0.4698 15 7 4.8649 -7.8180 -1.0654 16 8 5.8719 -6.8651 0.9762 17 8 3.7707 -8.2119 1.1114 18 6 2.2674 -5.8491 0.3388 19 6 1.5167 -4.6951 0.2291 20 7 0.0384 -4.7692 0.2401 21 8 -0.5617 -5.9359 0.3541 22 8 -0.6769 -3.6682 0.1360 23 1 -0.4850 0.8401 -0.0004 24 1 4.0335 -2.4459 -0.0056 25 1 5.3615 -4.5071 0.2011 26 1 4.5062 -7.3354 -1.8266 27 1 5.3763 -8.6305 -1.2033 28 1 1.7754 -6.8059 0.4326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822634236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:21 Heat of formation + Delta-G solvation = -61.482354 kcal Electronic energy + Delta-G solvation = -20573.270355 eV Core-core repulsion = 16914.590033 eV Total energy + Delta-G solvation = -3658.680322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.034 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.52940 -39.71704 -38.12730 -37.96489 -36.81893 -36.05499 -34.17304 -33.94890 -32.29493 -31.71003 -28.53937 -26.85349 -24.31604 -23.47725 -21.29442 -20.41012 -20.22292 -19.22195 -18.27189 -18.20916 -17.62236 -17.59074 -17.19369 -16.84080 -16.52056 -16.36287 -15.79873 -15.53980 -15.10450 -14.36868 -14.10106 -13.60957 -13.28484 -13.12896 -13.09806 -13.04594 -12.93375 -12.32961 -12.13343 -11.82265 -11.54785 -11.31697 -11.25346 -11.08228 -11.06575 -10.29622 -10.14357 -9.81488 -6.43953 -1.31215 -0.46558 -0.10914 0.68495 1.06384 1.31610 1.36405 1.58272 1.85296 1.99436 2.18911 2.34315 2.47084 2.85947 3.47277 3.69009 3.83913 4.06621 4.19928 4.42559 4.49083 4.71644 4.85367 5.08633 5.14703 5.31457 5.36518 5.74090 6.05665 6.44305 6.70375 6.94331 7.21861 Molecular weight = 288.03amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.005376 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.542107 B = 5207.116420 C = 6337.505343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C -0.020 4.020 3 Si 1.055 2.945 4 H -0.235 1.235 5 H -0.252 1.252 6 H -0.214 1.214 7 C -0.154 4.154 8 H 0.187 0.813 9 O -0.013 6.013 10 C -0.083 4.083 11 C -0.143 4.143 12 C -0.052 4.052 13 C -0.715 4.715 14 S 2.745 3.255 15 N -1.234 6.234 16 O -0.984 6.984 17 O -1.011 7.011 18 C 0.075 3.925 19 C -0.057 4.057 20 N 0.013 4.987 21 O -0.487 6.487 22 O -0.423 6.423 23 H 0.343 0.657 24 H 0.182 0.818 25 H 0.177 0.823 26 H 0.428 0.572 27 H 0.429 0.571 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 7.653 -4.627 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.249 4.249 3 Si 0.863 3.137 4 H -0.158 1.158 5 H -0.175 1.175 6 H -0.136 1.136 7 C -0.248 4.248 8 H 0.203 0.797 9 O 0.114 5.886 10 C -0.144 4.144 11 C -0.163 4.163 12 C -0.072 4.072 13 C -0.808 4.808 14 S 2.834 3.166 15 N -0.914 5.914 16 O -0.973 6.973 17 O -1.000 7.000 18 C 0.054 3.946 19 C -0.172 4.172 20 N 0.369 4.631 21 O -0.593 6.593 22 O -0.541 6.541 23 H 0.160 0.840 24 H 0.199 0.801 25 H 0.194 0.806 26 H 0.258 0.742 27 H 0.262 0.738 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.395 7.122 -3.653 18.244 hybrid contribution -1.822 0.420 -0.666 1.985 sum 14.573 7.542 -4.319 16.968 Atomic orbital electron populations 1.69029 1.11541 1.37413 1.13740 1.30202 0.96968 1.03892 0.93888 0.84160 0.79246 0.68123 0.82198 1.15842 1.17512 1.13566 1.25250 0.99459 0.83036 1.17022 0.79667 1.80645 1.42322 1.14841 1.50762 1.18470 0.91152 0.81837 1.22981 1.20951 0.88521 1.01611 1.05204 1.20519 1.00676 0.88866 0.97141 1.30008 1.02860 1.19803 1.28091 0.99974 0.72292 0.71791 0.72554 1.52668 1.72418 1.40900 1.25400 1.93536 1.41601 1.83395 1.78742 1.93550 1.70049 1.61380 1.75004 1.20356 0.92981 0.96185 0.85105 1.19433 0.76359 0.95443 1.25925 1.49299 1.03590 1.00589 1.09657 1.95923 1.75848 1.13001 1.74573 1.96018 1.66860 1.20875 1.70350 0.84042 0.80129 0.80603 0.74208 0.73763 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -26.13 13.66 23.22 0.32 -25.81 15 2 C -0.02 -0.61 5.69 87.25 0.50 -0.11 15 3 Si 1.05 17.05 29.64 68.60 2.03 19.08 15 4 H -0.24 -3.49 7.11 99.48 0.71 -2.78 15 5 H -0.25 -4.09 7.11 99.48 0.71 -3.38 15 6 H -0.21 -2.70 7.11 99.48 0.71 -1.99 15 7 C -0.15 -5.28 9.48 70.01 0.66 -4.61 15 8 H 0.19 4.25 5.03 -2.91 -0.01 4.23 15 9 O -0.01 -0.59 7.21 73.29 0.53 -0.07 15 10 C -0.08 -3.79 6.58 22.59 0.15 -3.64 15 11 C -0.14 -4.63 9.12 22.40 0.20 -4.42 15 12 C -0.05 -1.54 9.51 22.25 0.21 -1.32 15 13 C -0.72 -24.57 5.95 22.30 0.13 -24.43 15 14 S 2.75 77.91 6.28 -56.49 -0.35 77.56 15 15 N -1.23 -22.41 9.55 37.02 0.35 -22.06 15 16 O -0.98 -30.05 17.28 -128.00 -2.21 -32.26 15 17 O -1.01 -37.50 17.28 -128.00 -2.21 -39.71 15 18 C 0.07 3.38 9.05 22.25 0.20 3.58 15 19 C -0.06 -3.05 6.90 36.50 0.25 -2.80 15 20 N 0.01 0.84 4.98 -46.16 -0.23 0.61 15 21 O -0.49 -33.82 19.15 3.52 0.07 -33.76 15 22 O -0.42 -29.65 17.90 10.83 0.19 -29.46 15 23 H 0.34 10.32 8.26 -92.71 -0.77 9.56 15 24 H 0.18 3.86 5.69 -2.91 -0.02 3.85 15 25 H 0.18 3.76 7.61 -2.91 -0.02 3.73 15 26 H 0.43 6.25 8.92 -96.74 -0.86 5.39 15 27 H 0.43 5.56 8.96 -96.75 -0.87 4.69 15 28 H 0.14 6.40 7.13 -2.91 -0.02 6.38 15 Total: -1.00 -94.31 278.12 0.35 -93.96 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.45 Total: 29.67 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.31 Total: -37.76 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.44 Total: -47.26 kcal Atomic # 8 Polarization: -131.62 SS G_CDS: -3.63 Total: -135.25 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: 2.03 Total: 19.08 kcal Atomic # 16 Polarization: 77.91 SS G_CDS: -0.35 Total: 77.56 kcal Total: -94.31 0.35 -93.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822634236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.481 kcal (2) G-P(sol) polarization free energy of solvation -94.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds