Wall clock time and date at job start Tue Mar 31 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99908 * 2 1 4 4 C 1.53003 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47219 * 54.99687 * 4 3 2 6 6 O 1.42899 * 109.47158 * 294.99493 * 4 3 2 7 7 C 1.42904 * 114.00026 * 149.99842 * 6 4 3 8 8 C 1.50699 * 109.46996 * 174.99725 * 4 3 2 9 9 O 1.20826 * 119.99898 * 115.00220 * 8 4 3 10 10 O 1.34232 * 119.99912 * 294.99469 * 8 4 3 11 11 C 1.45205 * 116.99660 * 180.02562 * 10 8 4 12 12 C 1.53047 * 109.45740 * 270.07193 * 11 10 8 13 13 C 1.53190 * 109.30789 * 178.61881 * 12 11 10 14 14 N 1.46920 * 108.78088 * 54.63519 * 13 12 11 15 15 C 1.36939 * 120.63479 * 126.41143 * 14 13 12 16 16 H 1.08000 * 119.99734 * 331.83063 * 15 14 13 17 17 C 1.38813 * 120.00062 * 151.82693 * 15 14 13 18 18 N 1.31621 * 120.00017 * 343.07111 * 17 15 14 19 19 Si 1.86799 * 119.99910 * 163.07654 * 17 15 14 20 20 H 1.48496 * 109.47338 * 89.99816 * 19 17 15 21 21 H 1.48500 * 109.46892 * 209.99911 * 19 17 15 22 22 H 1.48508 * 109.47021 * 329.99683 * 19 17 15 23 23 C 1.46926 * 118.73705 * 306.39094 * 14 13 12 24 24 C 1.53038 * 109.45762 * 150.00753 * 11 10 8 25 25 H 1.09006 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47851 * 300.00191 * 1 2 3 27 27 H 1.08998 * 109.47050 * 60.01180 * 1 2 3 28 28 H 1.08996 * 109.46806 * 299.99205 * 3 2 1 29 29 H 1.08997 * 109.47328 * 59.99555 * 3 2 1 30 30 H 1.08994 * 109.47331 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46987 * 300.00289 * 7 6 4 32 32 H 1.08994 * 109.46837 * 60.00203 * 7 6 4 33 33 H 1.08997 * 109.46224 * 30.02756 * 11 10 8 34 34 H 1.09005 * 109.49756 * 298.56439 * 12 11 10 35 35 H 1.08995 * 109.49695 * 58.66545 * 12 11 10 36 36 H 1.09002 * 109.58618 * 294.84169 * 13 12 11 37 37 H 1.09006 * 109.70129 * 174.49356 * 13 12 11 38 38 H 0.96996 * 119.99483 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.58909 * 293.82170 * 23 14 13 40 40 H 1.09002 * 109.70914 * 173.46625 * 23 14 13 41 41 H 1.09005 * 109.49530 * 301.33473 * 24 11 10 42 42 H 1.08994 * 109.50065 * 61.43272 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5682 -0.8409 6 8 3.9648 0.5798 1.2220 7 6 5.1682 -0.1816 1.1019 8 6 4.1479 2.5560 -0.1233 9 8 4.8037 3.0090 0.7848 10 8 3.9651 3.2740 -1.2425 11 6 4.5848 4.5863 -1.2924 12 6 3.6123 5.6306 -0.7391 13 6 4.2820 7.0082 -0.7612 14 7 4.7516 7.2840 -2.1258 15 6 4.3877 8.4367 -2.7693 16 1 3.4523 8.9187 -2.5261 17 6 5.2212 8.9858 -3.7340 18 7 6.4820 8.6141 -3.8033 19 14 4.5536 10.2523 -4.9339 20 1 4.7276 11.6130 -4.3652 21 1 5.2920 10.1545 -6.2186 22 1 3.1102 9.9961 -5.1718 23 6 5.6194 6.2998 -2.7867 24 6 4.9348 4.9301 -2.7420 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5136 -0.8901 28 1 1.6886 1.8462 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 5.4266 -0.6079 2.0712 31 1 5.0195 -0.9847 0.3801 32 1 5.9760 0.4668 0.7628 33 1 5.4935 4.5819 -0.6905 34 1 2.7134 5.6532 -1.3553 35 1 3.3453 5.3723 0.2855 36 1 5.1290 7.0138 -0.0751 37 1 3.5635 7.7709 -0.4608 38 1 7.0642 8.9975 -4.4777 39 1 6.5755 6.2475 -2.2658 40 1 5.7839 6.5924 -3.8237 41 1 5.6089 4.1731 -3.1428 42 1 4.0235 4.9592 -3.3392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:41 Heat of formation + Delta-G solvation = -173.426772 kcal Electronic energy + Delta-G solvation = -23726.239976 eV Core-core repulsion = 20092.877703 eV Total energy + Delta-G solvation = -3633.362272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.93819 -39.79445 -38.87247 -38.19929 -37.22681 -34.64365 -32.56044 -31.93204 -31.39906 -27.80103 -27.53303 -26.88604 -25.18948 -24.07782 -23.71079 -21.87561 -21.07428 -19.19846 -18.94471 -18.23391 -17.89900 -17.35497 -16.95401 -16.69395 -16.38935 -16.22903 -15.84879 -15.43236 -15.31441 -15.02328 -14.87134 -14.49590 -14.26239 -14.05129 -13.41072 -13.29028 -13.08146 -12.84212 -12.71530 -12.61239 -12.50001 -12.40493 -12.26848 -12.12518 -12.00472 -11.96318 -11.83410 -11.48415 -11.12347 -10.81646 -10.69853 -10.57157 -8.77147 -7.91442 -5.37594 0.91361 1.34354 1.48676 1.49961 1.59974 2.50432 2.55399 2.72016 3.25473 3.49718 3.61538 3.74252 3.75698 3.79226 3.85025 4.12014 4.31376 4.33958 4.34228 4.47685 4.48762 4.54265 4.59059 4.60861 4.71296 4.78121 4.78831 4.84555 4.90517 4.93046 5.02005 5.19133 5.35497 5.42225 5.61177 5.66328 5.80322 6.07878 6.35188 6.59275 7.10104 7.78265 8.31358 9.16382 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.027976 B = 0.003454 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.625561 B = 8105.544164 C = 8599.090712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.075 3.925 4 C 0.107 3.893 5 H 0.131 0.869 6 O -0.369 6.369 7 C 0.021 3.979 8 C 0.438 3.562 9 O -0.521 6.521 10 O -0.346 6.346 11 C 0.104 3.896 12 C -0.133 4.133 13 C 0.146 3.854 14 N -0.610 5.610 15 C -0.268 4.268 16 H 0.070 0.930 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.268 1.268 23 C 0.180 3.820 24 C -0.121 4.121 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.012 0.988 37 H 0.067 0.933 38 H 0.252 0.748 39 H -0.001 1.001 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -18.892 5.480 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.002 4.002 4 C 0.047 3.953 5 H 0.149 0.851 6 O -0.287 6.287 7 C -0.075 4.075 8 C 0.281 3.719 9 O -0.409 6.409 10 O -0.263 6.263 11 C 0.049 3.951 12 C -0.172 4.172 13 C 0.020 3.980 14 N -0.334 5.334 15 C -0.398 4.398 16 H 0.088 0.912 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.193 1.193 23 C 0.054 3.946 24 C -0.160 4.160 25 H 0.122 0.878 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.187 -18.804 5.817 21.721 hybrid contribution 0.423 1.253 -0.553 1.433 sum -8.764 -17.551 5.263 20.311 Atomic orbital electron populations 1.22995 0.78687 1.04311 1.01126 1.87827 1.21937 1.26420 1.95681 1.22402 0.88534 0.86315 1.02974 1.21695 0.95126 0.87294 0.91227 0.85148 1.88026 1.43401 1.66850 1.30420 1.23131 0.85002 0.94572 1.04787 1.24825 0.78297 0.88661 0.80134 1.90669 1.38482 1.71346 1.40434 1.86562 1.69472 1.30523 1.39749 1.22681 0.95663 0.78106 0.98613 1.22278 0.98985 0.95221 1.00718 1.20955 0.96310 0.94504 0.86228 1.44377 1.57873 1.19433 1.11695 1.19528 1.00887 1.01696 1.17664 0.91210 1.25844 0.94824 1.00582 1.03104 1.70170 1.04612 1.47266 1.36032 0.85238 0.78094 0.78659 0.78192 1.21245 1.21730 1.19308 1.20590 0.90194 0.85432 0.98373 1.22186 1.01878 0.98487 0.93454 0.87811 0.93350 0.92637 0.88856 0.92049 0.87470 0.91169 0.94610 0.91845 0.90591 0.91284 0.97020 0.91461 0.93886 0.98279 0.91229 0.90316 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.73 10.67 -144.35 -1.54 -9.27 16 3 C 0.07 1.47 5.58 71.98 0.40 1.87 16 4 C 0.11 2.41 2.91 29.85 0.09 2.50 16 5 H 0.13 2.32 7.79 -2.39 -0.02 2.30 16 6 O -0.37 -9.16 9.85 -125.56 -1.24 -10.40 16 7 C 0.02 0.38 10.81 113.37 1.23 1.61 16 8 C 0.44 12.92 7.21 71.24 0.51 13.44 16 9 O -0.52 -18.97 15.73 28.38 0.45 -18.52 16 10 O -0.35 -10.56 9.85 -51.44 -0.51 -11.06 16 11 C 0.10 3.70 2.41 30.62 0.07 3.77 16 12 C -0.13 -4.74 5.72 30.67 0.18 -4.56 16 13 C 0.15 6.21 6.52 86.36 0.56 6.78 16 14 N -0.61 -30.74 2.99 -699.09 -2.09 -32.83 16 15 C -0.27 -14.59 9.58 84.03 0.81 -13.78 16 16 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 17 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 18 N -0.94 -54.62 11.19 21.65 0.24 -54.37 16 19 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.18 8.63 5.30 86.36 0.46 9.09 16 24 C -0.12 -4.55 5.74 30.67 0.18 -4.37 16 25 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 2.49 7.16 -2.39 -0.02 2.47 16 34 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 2.74 7.93 -2.38 -0.02 2.72 16 38 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 41 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -67.79 347.94 4.47 -63.32 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.99 Total: 11.41 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.14 Total: 15.67 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.85 Total: -87.20 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -2.84 Total: -49.25 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.79 4.47 -63.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.106 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds