Wall clock time and date at job start Tue Mar 31 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47200 * 2 1 4 4 O 1.42895 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.42899 * 113.99812 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47396 * 179.97438 * 5 4 3 7 7 O 1.45208 * 109.46513 * 65.00236 * 6 5 4 8 8 C 1.34632 * 116.99497 * 180.02562 * 7 6 5 9 9 O 1.21511 * 120.00754 * 0.27100 * 8 7 6 10 10 N 1.34784 * 119.99600 * 180.02562 * 8 7 6 11 11 C 1.47426 * 125.64857 * 0.02562 * 10 8 7 12 12 C 1.54912 * 104.82994 * 204.09393 * 11 10 8 13 13 C 1.55160 * 101.57860 * 322.98724 * 12 11 10 14 14 O 1.42900 * 110.72234 * 277.13738 * 13 12 11 15 15 C 1.50700 * 110.71947 * 154.04436 * 13 12 11 16 16 H 1.08002 * 119.99938 * 0.02562 * 15 13 12 17 17 C 1.37877 * 120.00455 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99512 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00451 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46778 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47047 * 120.00160 * 19 17 15 22 22 H 1.48489 * 109.47296 * 240.00205 * 19 17 15 23 23 C 1.47022 * 125.64460 * 179.71525 * 10 8 7 24 24 H 1.08999 * 109.46820 * 60.00079 * 1 2 3 25 25 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47074 * 300.00580 * 1 2 3 27 27 H 1.09000 * 109.47652 * 239.99914 * 2 1 3 28 28 H 1.09005 * 109.47233 * 119.99779 * 2 1 3 29 29 H 1.09001 * 109.47101 * 59.99956 * 3 2 1 30 30 H 1.08997 * 109.46494 * 300.00021 * 3 2 1 31 31 H 1.09006 * 109.47152 * 59.99897 * 5 4 3 32 32 H 1.08997 * 109.47320 * 300.00281 * 5 4 3 33 33 H 1.09003 * 109.47196 * 305.00827 * 6 5 4 34 34 H 1.08995 * 109.47536 * 184.99788 * 6 5 4 35 35 H 1.08998 * 110.36404 * 322.92704 * 11 10 8 36 36 H 1.08991 * 110.36580 * 85.14144 * 11 10 8 37 37 H 1.08995 * 111.00742 * 81.05954 * 12 11 10 38 38 H 1.09000 * 111.00295 * 204.91652 * 12 11 10 39 39 H 0.96702 * 114.00037 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99577 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.88188 * 298.39260 * 23 10 8 42 42 H 1.09002 * 109.88437 * 59.55854 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7479 0.0001 6 6 5.5755 2.6272 0.0014 7 8 6.0132 2.0113 -1.2386 8 6 7.3380 1.8310 -1.3970 9 8 8.1071 2.1742 -0.5211 10 7 7.8109 1.2652 -2.5252 11 6 6.9939 0.8000 -3.6608 12 6 7.8632 -0.2742 -4.3609 13 6 9.2847 0.3295 -4.2112 14 8 9.5365 1.2908 -5.2380 15 6 10.3299 -0.7560 -4.2319 16 1 10.0336 -1.7889 -4.3411 17 6 11.6644 -0.4306 -4.1125 18 7 12.0251 0.8272 -3.9800 19 14 12.9598 -1.7762 -4.1375 20 1 12.2989 -3.0966 -4.2955 21 1 13.8881 -1.5485 -5.2740 22 1 13.7222 -1.7530 -2.8634 23 6 9.2274 1.0157 -2.8300 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7282 3.2894 0.8896 32 1 3.7290 3.2884 -0.8903 33 1 5.8905 2.0114 0.8439 34 1 6.0185 3.6191 0.0905 35 1 6.0628 0.3604 -3.3032 36 1 6.7861 1.6251 -4.3418 37 1 7.7896 -1.2324 -3.8467 38 1 7.5899 -0.3742 -5.4113 39 1 10.4124 1.6978 -5.1896 40 1 12.9639 1.0561 -3.8956 41 1 9.7720 1.9595 -2.8599 42 1 9.6593 0.3599 -2.0740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859203261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:11 Heat of formation + Delta-G solvation = -205.441369 kcal Electronic energy + Delta-G solvation = -23301.608455 eV Core-core repulsion = 19666.857926 eV Total energy + Delta-G solvation = -3634.750530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60807 -39.77659 -39.03407 -37.35873 -36.20094 -34.65851 -34.17885 -32.09478 -31.03489 -29.67033 -27.26402 -26.73672 -24.68854 -23.56026 -22.33145 -21.77464 -21.36482 -19.26546 -19.02366 -18.18281 -18.03739 -17.32545 -17.14858 -16.95121 -16.31322 -15.86122 -15.63445 -15.20434 -14.87411 -14.82426 -14.52774 -14.34437 -13.86974 -13.52900 -13.49123 -13.33480 -13.00450 -12.89211 -12.87987 -12.59165 -12.36620 -12.29455 -12.24163 -12.12182 -11.89867 -11.76768 -11.68044 -11.62680 -11.22819 -10.65674 -10.58834 -10.34311 -9.74571 -8.28246 -6.43903 1.05997 1.42264 1.45359 1.56197 1.68544 2.37981 2.62386 2.95279 2.98387 3.78163 3.85572 4.02362 4.05755 4.07109 4.12163 4.17586 4.30331 4.34070 4.42674 4.47623 4.54152 4.60717 4.65501 4.66702 4.69231 4.87818 4.94822 5.08720 5.15735 5.17765 5.21148 5.25495 5.33950 5.37406 5.46062 5.73964 6.01391 6.24729 6.47806 6.63920 7.17710 7.28075 7.37822 8.78591 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.003264 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.911036 B = 8576.526286 C = 8961.365014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.057 3.943 4 O -0.413 6.413 5 C 0.071 3.929 6 C 0.077 3.923 7 O -0.360 6.360 8 C 0.656 3.344 9 O -0.617 6.617 10 N -0.601 5.601 11 C 0.113 3.887 12 C -0.111 4.111 13 C 0.235 3.765 14 O -0.588 6.588 15 C -0.555 4.555 16 H 0.070 0.930 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.284 1.284 23 C 0.134 3.866 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.380 0.620 40 H 0.272 0.728 41 H 0.037 0.963 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.181 1.977 6.016 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.019 4.019 4 O -0.333 6.333 5 C -0.005 4.005 6 C 0.003 3.997 7 O -0.273 6.273 8 C 0.411 3.589 9 O -0.510 6.510 10 N -0.340 5.340 11 C -0.009 4.009 12 C -0.148 4.148 13 C 0.195 3.805 14 O -0.397 6.397 15 C -0.593 4.593 16 H 0.089 0.911 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.210 1.210 23 C 0.012 3.988 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.231 0.769 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.406 1.924 6.230 21.423 hybrid contribution 1.774 0.068 0.463 1.835 sum -18.632 1.992 6.692 19.898 Atomic orbital electron populations 1.21667 0.93085 1.02801 1.02631 1.21497 0.97044 0.95369 1.02561 1.22734 0.79479 0.98450 1.01266 1.87944 1.21387 1.28312 1.95704 1.22662 0.88941 0.85459 1.03449 1.23327 0.94737 0.98630 0.83001 1.86296 1.21376 1.76405 1.43252 1.17750 0.81561 0.77695 0.81900 1.90918 1.58671 1.57982 1.43395 1.47567 1.09793 1.60718 1.15971 1.22423 0.94357 0.97419 0.86697 1.22770 0.92974 0.97442 1.01660 1.19704 0.93237 0.85879 0.81690 1.86075 1.40175 1.59553 1.53882 1.21854 0.91702 0.94118 1.51601 0.91133 1.25844 1.00821 0.97988 0.92928 1.69679 1.18355 1.18044 1.49627 0.85365 0.78488 0.79411 0.77533 1.18861 1.20229 1.20966 1.22729 0.77253 0.98683 1.00133 0.91990 0.91605 0.91669 0.92299 0.91887 0.91659 0.92434 0.87490 0.91006 0.91439 0.88687 0.88736 0.90931 0.89646 0.88662 0.76934 0.91821 0.94406 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.13 -2.01 6.30 30.60 0.19 -1.81 16 3 C 0.06 0.92 5.94 71.98 0.43 1.34 16 4 O -0.41 -9.69 10.31 -145.57 -1.50 -11.19 16 5 C 0.07 1.35 6.33 71.98 0.46 1.81 16 6 C 0.08 2.07 5.85 71.98 0.42 2.49 16 7 O -0.36 -12.71 9.72 -52.76 -0.51 -13.22 16 8 C 0.66 28.51 8.62 129.79 1.12 29.63 16 9 O -0.62 -30.39 16.46 19.81 0.33 -30.06 16 10 N -0.60 -26.45 3.33 -942.06 -3.13 -29.58 16 11 C 0.11 4.11 6.91 86.86 0.60 4.72 16 12 C -0.11 -4.36 6.23 31.99 0.20 -4.16 16 13 C 0.24 11.52 0.86 -10.35 -0.01 11.51 16 14 O -0.59 -29.96 13.07 -148.98 -1.95 -31.91 16 15 C -0.55 -28.98 8.12 25.60 0.21 -28.77 16 16 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 17 C 0.02 1.29 5.28 84.65 0.45 1.74 16 18 N -0.92 -49.47 10.97 21.45 0.24 -49.24 16 19 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.13 6.77 5.54 86.73 0.48 7.25 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.09 2.96 8.04 -2.39 -0.02 2.95 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 38 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.38 20.21 6.98 -74.06 -0.52 19.70 16 40 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.04 2.09 8.07 -2.38 -0.02 2.07 16 42 H 0.04 2.28 7.82 -2.39 -0.02 2.26 16 Total: -1.00 -65.62 351.46 1.23 -64.39 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.48 Total: 32.08 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: 5.26 Total: 24.91 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.90 Total: -78.82 kcal Atomic # 8 Polarization: -82.75 SS G_CDS: -3.64 Total: -86.39 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -65.62 1.23 -64.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859203261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.047 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds