Wall clock time and date at job start Tue Mar 31 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99698 * 2 1 4 4 C 1.53008 * 109.46910 * 186.71644 * 3 2 1 5 5 N 1.46893 * 109.47158 * 305.16268 * 4 3 2 6 6 C 1.46900 * 110.99787 * 287.35034 * 5 4 3 7 7 C 1.53008 * 109.47071 * 302.80700 * 6 5 4 8 8 C 1.52998 * 109.46948 * 185.48906 * 7 6 5 9 9 O 1.42906 * 109.46977 * 184.89378 * 8 7 6 10 10 C 1.46897 * 111.00244 * 163.39869 * 5 4 3 11 11 C 1.53001 * 109.47226 * 200.73121 * 10 5 4 12 12 C 1.50703 * 115.54892 * 56.33178 * 11 10 5 13 13 H 1.08001 * 119.99407 * 272.49782 * 12 11 10 14 14 C 1.37872 * 120.00170 * 92.22231 * 12 11 10 15 15 N 1.31509 * 120.00005 * 173.65720 * 14 12 11 16 16 Si 1.86801 * 120.00009 * 353.65851 * 14 12 11 17 17 H 1.48508 * 109.46986 * 94.18936 * 16 14 12 18 18 H 1.48494 * 109.47004 * 214.18850 * 16 14 12 19 19 H 1.48496 * 109.47504 * 334.18989 * 16 14 12 20 20 C 1.52998 * 117.49561 * 201.99702 * 11 10 5 21 21 C 1.52993 * 117.49988 * 270.65658 * 11 10 5 22 22 O 1.42899 * 109.47044 * 66.72187 * 3 2 1 23 23 C 1.42898 * 114.00056 * 275.20085 * 22 3 2 24 24 H 1.09007 * 109.47012 * 285.18157 * 1 2 3 25 25 H 1.09002 * 109.47519 * 45.17630 * 1 2 3 26 26 H 1.08995 * 109.47563 * 165.18292 * 1 2 3 27 27 H 1.08995 * 109.47364 * 306.71604 * 3 2 1 28 28 H 1.09000 * 109.46920 * 185.15572 * 4 3 2 29 29 H 1.09002 * 109.46591 * 65.15965 * 4 3 2 30 30 H 1.09001 * 109.47690 * 62.80554 * 6 5 4 31 31 H 1.09004 * 109.47198 * 182.81025 * 6 5 4 32 32 H 1.08998 * 109.46641 * 305.48382 * 7 6 5 33 33 H 1.08996 * 109.46855 * 65.48480 * 7 6 5 34 34 H 1.09004 * 109.47162 * 304.88876 * 8 7 6 35 35 H 1.08994 * 109.47422 * 64.89014 * 8 7 6 36 36 H 0.96695 * 113.99719 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47172 * 80.73055 * 10 5 4 38 38 H 1.09006 * 109.46853 * 320.73366 * 10 5 4 39 39 H 0.97004 * 120.00153 * 174.99646 * 15 14 12 40 40 H 1.09008 * 117.49663 * 215.00579 * 20 11 10 41 41 H 1.08995 * 117.50285 * 0.02562 * 20 11 10 42 42 H 1.09004 * 117.49812 * 359.97438 * 21 11 10 43 43 H 1.08997 * 117.49964 * 144.97333 * 21 11 10 44 44 H 1.09000 * 109.47368 * 173.42655 * 23 22 3 45 45 H 1.09001 * 109.47234 * 293.43376 * 23 22 3 46 46 H 1.09005 * 109.46760 * 53.42713 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5264 1.1887 -0.1687 5 7 4.0680 0.3032 0.8706 6 6 4.0528 0.9617 2.1836 7 6 4.8475 2.2671 2.1087 8 6 4.9477 2.8840 3.5053 9 8 5.5901 4.1576 3.4184 10 6 5.4221 -0.1488 0.5241 11 6 5.7507 -1.4218 1.3065 12 6 4.7862 -2.5650 1.1225 13 1 3.9114 -2.6399 1.7515 14 6 5.0174 -3.5121 0.1476 15 7 4.2473 -4.5751 0.0676 16 14 6.4248 -3.2853 -1.0596 17 1 7.6272 -3.9977 -0.5576 18 1 6.0370 -3.8395 -2.3816 19 1 6.7290 -1.8386 -1.1993 20 6 7.2279 -1.7685 1.5033 21 6 6.3974 -1.2577 2.6833 22 8 1.7175 1.9572 1.2376 23 6 0.4478 2.6123 1.2634 24 1 -0.3633 0.2691 0.9919 25 1 -0.3634 0.7244 -0.7289 26 1 -0.3634 -0.9934 -0.2628 27 1 1.5967 1.8873 -0.8237 28 1 3.9793 2.1760 -0.0772 29 1 3.7518 0.7754 -1.1518 30 1 3.0236 1.1790 2.4694 31 1 4.5047 0.3034 2.9256 32 1 5.8486 2.0617 1.7296 33 1 4.3412 2.9628 1.4396 34 1 3.9474 3.0091 3.9199 35 1 5.5294 2.2270 4.1518 36 1 5.6875 4.6077 4.2687 37 1 6.1412 0.6299 0.7784 38 1 5.4736 -0.3557 -0.5449 39 1 4.3635 -5.2044 -0.6613 40 1 7.5020 -2.8235 1.4997 41 1 7.9655 -1.0895 1.0757 42 1 6.5892 -0.2428 3.0315 43 1 6.1249 -1.9763 3.4562 44 1 0.2498 2.9816 2.2697 45 1 0.4562 3.4488 0.5646 46 1 -0.3312 1.9063 0.9756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878396022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:57 Heat of formation + Delta-G solvation = -91.316481 kcal Electronic energy + Delta-G solvation = -25300.226615 eV Core-core repulsion = 21806.258007 eV Total energy + Delta-G solvation = -3493.968608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -39.38030 -37.97888 -36.78322 -35.62284 -35.38097 -31.80655 -31.37933 -29.45048 -26.70691 -26.26081 -25.72529 -25.02735 -23.23809 -22.18000 -21.41954 -19.97944 -18.63902 -17.26590 -17.13899 -17.08909 -15.98728 -15.50831 -15.47762 -15.08275 -14.47652 -14.31101 -14.10992 -13.85991 -13.55063 -13.31735 -13.12450 -12.88047 -12.55282 -12.49331 -12.22478 -11.91770 -11.53490 -11.44737 -11.19414 -10.99188 -10.86272 -10.80077 -10.41147 -10.28110 -10.21356 -9.88242 -9.83626 -9.64161 -9.49841 -9.36992 -8.75634 -8.33896 -8.26926 -7.34070 -5.84828 -3.80638 3.42611 3.51580 3.55567 3.79362 4.06771 4.29757 4.47691 4.63319 4.93033 5.14101 5.17839 5.21318 5.25649 5.30679 5.39436 5.43095 5.46528 5.54338 5.61239 5.63684 5.69721 5.85885 5.91609 5.93647 5.99555 6.04414 6.10875 6.20146 6.33463 6.38356 6.41784 6.58192 6.73014 6.85678 6.90655 7.17630 7.21885 7.33087 7.45689 7.63201 7.85584 7.93175 8.05622 8.81531 9.25716 9.80034 11.28524 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.007135 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.023346 B = 3923.587835 C = 5494.182249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.351 6.351 3 C 0.251 3.749 4 C 0.062 3.938 5 N -0.484 5.484 6 C 0.057 3.943 7 C -0.157 4.157 8 C 0.082 3.918 9 O -0.579 6.579 10 C 0.088 3.912 11 C 0.019 3.981 12 C -0.445 4.445 13 H 0.080 0.920 14 C 0.072 3.928 15 N -0.905 5.905 16 Si 0.874 3.126 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.263 1.263 20 C -0.207 4.207 21 C -0.185 4.185 22 O -0.384 6.384 23 C 0.010 3.990 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.373 0.627 37 H 0.015 0.985 38 H 0.065 0.935 39 H 0.259 0.741 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 16.478 2.509 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.270 6.270 3 C 0.156 3.844 4 C -0.067 4.067 5 N -0.205 5.205 6 C -0.071 4.071 7 C -0.196 4.196 8 C 0.004 3.996 9 O -0.384 6.384 10 C -0.040 4.040 11 C 0.017 3.983 12 C -0.483 4.483 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.545 5.545 16 Si 0.704 3.296 17 H -0.211 1.211 18 H -0.226 1.226 19 H -0.188 1.188 20 C -0.245 4.245 21 C -0.223 4.223 22 O -0.304 6.304 23 C -0.087 4.087 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.219 0.781 37 H 0.033 0.967 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.055 0.945 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.691 15.502 1.957 16.314 hybrid contribution 0.804 1.154 -0.447 1.475 sum -3.887 16.655 1.510 17.169 Atomic orbital electron populations 1.22923 0.82866 1.02319 0.99250 1.88411 1.17866 1.27243 1.93466 1.23485 0.94477 0.81593 0.84881 1.22227 0.90277 0.96624 0.97540 1.61895 1.22728 1.35658 1.00253 1.22343 1.00876 0.91169 0.92692 1.22255 1.01833 0.99353 0.96162 1.22131 0.95590 0.83707 0.98139 1.86494 1.82493 1.33946 1.35491 1.21985 0.87071 0.95061 0.99842 1.19376 0.90403 0.95136 0.93369 1.20141 1.07171 1.02782 1.18223 0.90180 1.24894 0.96047 0.94394 0.97390 1.69911 1.40946 1.11895 1.31708 0.86966 0.83112 0.78825 0.80725 1.21131 1.22579 1.18763 1.22967 0.96047 1.00509 1.04929 1.22860 1.06912 0.99304 0.93190 1.88149 1.34996 1.69521 1.37783 1.23113 0.86827 0.96262 1.02448 0.93776 0.95047 0.89744 0.93456 0.92951 0.89349 0.88900 0.90314 0.91782 0.91408 0.93686 0.93803 0.78102 0.96716 0.91640 0.93114 0.89515 0.91391 0.91501 0.89741 0.89952 0.94501 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.48 101.05 0.96 1.27 16 2 O -0.35 -6.44 10.38 -59.04 -0.61 -7.05 16 3 C 0.25 3.86 3.18 37.16 0.12 3.98 16 4 C 0.06 1.03 5.07 -3.82 -0.02 1.01 16 5 N -0.48 -9.49 4.07 -234.62 -0.96 -10.45 16 6 C 0.06 1.00 4.80 -3.82 -0.02 0.98 16 7 C -0.16 -2.39 4.88 -26.73 -0.13 -2.52 16 8 C 0.08 1.08 7.05 37.16 0.26 1.34 16 9 O -0.58 -7.40 13.66 -35.23 -0.48 -7.89 16 10 C 0.09 1.84 4.57 -3.83 -0.02 1.83 16 11 C 0.02 0.43 0.76 -155.66 -0.12 0.31 16 12 C -0.45 -12.63 9.15 -34.44 -0.32 -12.95 16 13 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 14 C 0.07 2.12 5.46 -17.82 -0.10 2.03 16 15 N -0.91 -28.32 13.95 55.43 0.77 -27.55 16 16 Si 0.87 22.32 24.85 -169.99 -4.22 18.10 16 17 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 19 H -0.26 -6.32 5.68 56.52 0.32 -6.00 16 20 C -0.21 -4.55 7.54 -26.70 -0.20 -4.75 16 21 C -0.19 -3.87 8.49 -26.70 -0.23 -4.09 16 22 O -0.38 -5.56 7.45 -59.04 -0.44 -6.00 16 23 C 0.01 0.10 10.53 101.05 1.06 1.17 16 24 H 0.04 0.56 6.33 -51.92 -0.33 0.23 16 25 H 0.03 0.34 7.70 -51.93 -0.40 -0.06 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.61 7.74 -51.93 -0.40 0.21 16 28 H 0.05 0.78 5.74 -51.93 -0.30 0.49 16 29 H 0.09 1.47 7.66 -51.93 -0.40 1.07 16 30 H 0.09 1.63 5.46 -51.93 -0.28 1.35 16 31 H 0.08 1.47 5.88 -51.93 -0.31 1.16 16 32 H 0.06 1.06 6.11 -51.93 -0.32 0.74 16 33 H 0.07 1.04 6.41 -51.93 -0.33 0.71 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.37 2.89 9.12 45.56 0.42 3.30 16 37 H 0.01 0.29 5.85 -51.93 -0.30 -0.02 16 38 H 0.07 1.44 6.18 -51.93 -0.32 1.12 16 39 H 0.26 7.68 8.32 -40.82 -0.34 7.34 16 40 H 0.09 2.03 7.02 -51.92 -0.36 1.66 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.24 7.75 -51.93 -0.40 0.84 16 43 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.51 4.45 -51.93 -0.23 0.28 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -33.70 348.02 -6.31 -40.01 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.87 Total: 5.98 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 1.26 Total: -10.39 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.18 Total: -38.00 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.53 Total: -20.94 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.22 Total: 18.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.70 -6.31 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878396022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.311 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds