Wall clock time and date at job start Tue Mar 31 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99698 * 2 1 4 4 C 1.53008 * 109.46910 * 186.71644 * 3 2 1 5 5 N 1.46893 * 109.47158 * 305.16268 * 4 3 2 6 6 C 1.46900 * 110.99787 * 287.35034 * 5 4 3 7 7 C 1.53008 * 109.47071 * 302.80700 * 6 5 4 8 8 C 1.52998 * 109.46948 * 185.48906 * 7 6 5 9 9 O 1.42906 * 109.46977 * 184.89378 * 8 7 6 10 10 C 1.46897 * 111.00244 * 163.39869 * 5 4 3 11 11 C 1.53001 * 109.47226 * 200.73121 * 10 5 4 12 12 C 1.50703 * 115.54892 * 56.33178 * 11 10 5 13 13 H 1.08001 * 119.99407 * 272.49782 * 12 11 10 14 14 C 1.37872 * 120.00170 * 92.22231 * 12 11 10 15 15 N 1.31509 * 120.00005 * 173.65720 * 14 12 11 16 16 Si 1.86801 * 120.00009 * 353.65851 * 14 12 11 17 17 H 1.48508 * 109.46986 * 94.18936 * 16 14 12 18 18 H 1.48494 * 109.47004 * 214.18850 * 16 14 12 19 19 H 1.48496 * 109.47504 * 334.18989 * 16 14 12 20 20 C 1.52998 * 117.49561 * 201.99702 * 11 10 5 21 21 C 1.52993 * 117.49988 * 270.65658 * 11 10 5 22 22 O 1.42899 * 109.47044 * 66.72187 * 3 2 1 23 23 C 1.42898 * 114.00056 * 275.20085 * 22 3 2 24 24 H 1.09007 * 109.47012 * 285.18157 * 1 2 3 25 25 H 1.09002 * 109.47519 * 45.17630 * 1 2 3 26 26 H 1.08995 * 109.47563 * 165.18292 * 1 2 3 27 27 H 1.08995 * 109.47364 * 306.71604 * 3 2 1 28 28 H 1.09000 * 109.46920 * 185.15572 * 4 3 2 29 29 H 1.09002 * 109.46591 * 65.15965 * 4 3 2 30 30 H 1.09001 * 109.47690 * 62.80554 * 6 5 4 31 31 H 1.09004 * 109.47198 * 182.81025 * 6 5 4 32 32 H 1.08998 * 109.46641 * 305.48382 * 7 6 5 33 33 H 1.08996 * 109.46855 * 65.48480 * 7 6 5 34 34 H 1.09004 * 109.47162 * 304.88876 * 8 7 6 35 35 H 1.08994 * 109.47422 * 64.89014 * 8 7 6 36 36 H 0.96695 * 113.99719 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.47172 * 80.73055 * 10 5 4 38 38 H 1.09006 * 109.46853 * 320.73366 * 10 5 4 39 39 H 0.97004 * 120.00153 * 174.99646 * 15 14 12 40 40 H 1.09008 * 117.49663 * 215.00579 * 20 11 10 41 41 H 1.08995 * 117.50285 * 0.02562 * 20 11 10 42 42 H 1.09004 * 117.49812 * 359.97438 * 21 11 10 43 43 H 1.08997 * 117.49964 * 144.97333 * 21 11 10 44 44 H 1.09000 * 109.47368 * 173.42655 * 23 22 3 45 45 H 1.09001 * 109.47234 * 293.43376 * 23 22 3 46 46 H 1.09005 * 109.46760 * 53.42713 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5264 1.1887 -0.1687 5 7 4.0680 0.3032 0.8706 6 6 4.0528 0.9617 2.1836 7 6 4.8475 2.2671 2.1087 8 6 4.9477 2.8840 3.5053 9 8 5.5901 4.1576 3.4184 10 6 5.4221 -0.1488 0.5241 11 6 5.7507 -1.4218 1.3065 12 6 4.7862 -2.5650 1.1225 13 1 3.9114 -2.6399 1.7515 14 6 5.0174 -3.5121 0.1476 15 7 4.2473 -4.5751 0.0676 16 14 6.4248 -3.2853 -1.0596 17 1 7.6272 -3.9977 -0.5576 18 1 6.0370 -3.8395 -2.3816 19 1 6.7290 -1.8386 -1.1993 20 6 7.2279 -1.7685 1.5033 21 6 6.3974 -1.2577 2.6833 22 8 1.7175 1.9572 1.2376 23 6 0.4478 2.6123 1.2634 24 1 -0.3633 0.2691 0.9919 25 1 -0.3634 0.7244 -0.7289 26 1 -0.3634 -0.9934 -0.2628 27 1 1.5967 1.8873 -0.8237 28 1 3.9793 2.1760 -0.0772 29 1 3.7518 0.7754 -1.1518 30 1 3.0236 1.1790 2.4694 31 1 4.5047 0.3034 2.9256 32 1 5.8486 2.0617 1.7296 33 1 4.3412 2.9628 1.4396 34 1 3.9474 3.0091 3.9199 35 1 5.5294 2.2270 4.1518 36 1 5.6875 4.6077 4.2687 37 1 6.1412 0.6299 0.7784 38 1 5.4736 -0.3557 -0.5449 39 1 4.3635 -5.2044 -0.6613 40 1 7.5020 -2.8235 1.4997 41 1 7.9655 -1.0895 1.0757 42 1 6.5892 -0.2428 3.0315 43 1 6.1249 -1.9763 3.4562 44 1 0.2498 2.9816 2.2697 45 1 0.4562 3.4488 0.5646 46 1 -0.3312 1.9063 0.9756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878396022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:53 Heat of formation + Delta-G solvation = -118.471001 kcal Electronic energy + Delta-G solvation = -25301.404124 eV Core-core repulsion = 21806.258007 eV Total energy + Delta-G solvation = -3495.146117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61464 -39.39408 -37.95607 -36.88160 -36.70498 -34.02856 -32.56918 -30.69058 -28.12978 -27.58534 -26.96933 -26.68207 -24.53161 -23.48458 -23.00648 -21.38638 -20.46349 -18.41440 -18.32408 -18.15686 -17.83523 -16.90721 -16.63477 -16.51371 -16.06992 -15.60288 -15.51131 -15.19245 -14.79544 -14.64613 -14.42532 -14.34529 -14.11282 -13.83021 -13.51470 -13.18089 -13.12299 -12.98961 -12.70868 -12.44117 -12.20451 -12.11293 -11.92743 -11.85146 -11.79881 -11.54118 -11.40226 -10.84429 -10.74273 -10.63030 -10.59258 -10.42863 -10.13747 -8.75401 -8.11494 -6.10686 1.39714 1.42075 1.54707 2.48878 2.75855 2.90923 3.05486 3.22744 3.37467 3.52079 3.89251 4.04034 4.11256 4.22912 4.34049 4.36487 4.37396 4.43935 4.46850 4.50993 4.53245 4.56093 4.57748 4.62667 4.64088 4.72252 4.80171 4.87052 4.89233 4.92474 4.96441 5.06231 5.13489 5.31404 5.46991 5.56117 5.61885 5.86979 6.17079 6.30860 6.43202 6.56022 6.61976 6.93567 6.94970 7.53129 9.06005 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.007135 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.023346 B = 3923.587835 C = 5494.182249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.399 6.399 3 C 0.252 3.748 4 C 0.059 3.941 5 N -0.515 5.515 6 C 0.067 3.933 7 C -0.145 4.145 8 C 0.087 3.913 9 O -0.594 6.594 10 C 0.098 3.902 11 C -0.007 4.007 12 C -0.436 4.436 13 H 0.026 0.974 14 C 0.013 3.987 15 N -0.959 5.959 16 Si 0.936 3.064 17 H -0.278 1.278 18 H -0.304 1.304 19 H -0.235 1.235 20 C -0.202 4.202 21 C -0.165 4.165 22 O -0.400 6.400 23 C 0.003 3.997 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.395 0.605 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.258 0.742 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 19.595 2.411 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.319 6.319 3 C 0.156 3.844 4 C -0.069 4.069 5 N -0.236 5.236 6 C -0.061 4.061 7 C -0.184 4.184 8 C 0.008 3.992 9 O -0.402 6.402 10 C -0.030 4.030 11 C -0.008 4.008 12 C -0.474 4.474 13 H 0.044 0.956 14 C -0.182 4.182 15 N -0.601 5.601 16 Si 0.762 3.238 17 H -0.204 1.204 18 H -0.232 1.232 19 H -0.158 1.158 20 C -0.240 4.240 21 C -0.202 4.202 22 O -0.321 6.321 23 C -0.092 4.092 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.245 0.755 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.543 18.670 1.895 19.098 hybrid contribution 0.303 0.221 -0.284 0.471 sum -3.240 18.891 1.610 19.235 Atomic orbital electron populations 1.23050 0.81038 1.02885 1.00598 1.88341 1.20217 1.29505 1.93854 1.23509 0.93636 0.81081 0.86150 1.22315 0.91456 0.96837 0.96302 1.61789 1.22129 1.37839 1.01871 1.22175 1.00942 0.91718 0.91231 1.22059 1.00561 0.98129 0.97632 1.22009 0.96408 0.84063 0.96675 1.86425 1.82414 1.33759 1.37646 1.21752 0.88633 0.94248 0.98348 1.19298 0.90386 0.94859 0.96249 1.20201 1.06222 1.04343 1.16631 0.95601 1.25707 0.98905 0.94036 0.99556 1.70079 1.43822 1.13395 1.32834 0.85959 0.79749 0.80342 0.77715 1.20379 1.23189 1.15770 1.23004 0.95411 1.00356 1.05220 1.22829 1.04935 1.00622 0.91858 1.88088 1.36860 1.69687 1.37497 1.23322 0.85337 0.96678 1.03896 0.93085 0.92035 0.90570 0.90565 0.91031 0.90023 0.89285 0.92087 0.92727 0.91406 0.92687 0.93262 0.75526 0.94417 0.93000 0.93322 0.91217 0.88339 0.88352 0.91019 0.88683 0.92612 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.48 113.37 1.07 1.62 16 2 O -0.40 -14.70 10.38 -126.21 -1.31 -16.01 16 3 C 0.25 7.40 3.18 71.98 0.23 7.63 16 4 C 0.06 1.89 5.07 86.31 0.44 2.33 16 5 N -0.51 -19.88 4.07 -896.20 -3.65 -23.53 16 6 C 0.07 2.26 4.80 86.31 0.41 2.67 16 7 C -0.14 -4.04 4.88 30.60 0.15 -3.89 16 8 C 0.09 2.01 7.05 71.98 0.51 2.52 16 9 O -0.59 -13.22 13.66 -148.98 -2.04 -15.25 16 10 C 0.10 3.96 4.57 86.30 0.39 4.35 16 11 C -0.01 -0.31 0.76 -52.93 -0.04 -0.35 16 12 C -0.44 -25.55 9.15 25.60 0.23 -25.32 16 13 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 14 C 0.01 0.76 5.46 84.65 0.46 1.22 16 15 N -0.96 -62.68 13.95 21.44 0.30 -62.38 16 16 Si 0.94 46.36 24.85 68.60 1.70 48.07 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 19 H -0.23 -10.46 5.68 99.48 0.57 -9.90 16 20 C -0.20 -8.43 7.54 30.62 0.23 -8.20 16 21 C -0.17 -6.63 8.49 30.62 0.26 -6.37 16 22 O -0.40 -10.90 7.45 -126.21 -0.94 -11.84 16 23 C 0.00 0.06 10.53 113.37 1.19 1.25 16 24 H 0.05 1.27 6.33 -2.38 -0.02 1.25 16 25 H 0.06 1.24 7.70 -2.39 -0.02 1.22 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 1.77 7.74 -2.39 -0.02 1.75 16 28 H 0.07 1.98 5.74 -2.39 -0.01 1.97 16 29 H 0.08 2.66 7.66 -2.39 -0.02 2.64 16 30 H 0.09 3.06 5.46 -2.39 -0.01 3.05 16 31 H 0.06 2.22 5.88 -2.38 -0.01 2.21 16 32 H 0.05 1.63 6.11 -2.39 -0.01 1.61 16 33 H 0.07 1.90 6.41 -2.39 -0.02 1.88 16 34 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.40 4.78 9.12 -74.06 -0.68 4.10 16 37 H 0.04 1.35 5.85 -2.39 -0.01 1.34 16 38 H 0.05 2.20 6.18 -2.38 -0.01 2.19 16 39 H 0.26 15.95 8.32 -92.71 -0.77 15.18 16 40 H 0.07 3.15 7.02 -2.38 -0.02 3.13 16 41 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 42 H 0.10 3.34 7.75 -2.39 -0.02 3.32 16 43 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.05 0.98 4.45 -2.38 -0.01 0.97 16 Total: -1.00 -75.66 348.02 -0.23 -75.89 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.16 Total: 25.59 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 5.55 Total: -20.53 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.35 Total: -85.90 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -4.29 Total: -43.11 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.70 Total: 48.07 kcal Total: -75.66 -0.23 -75.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878396022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.583 kcal (2) G-P(sol) polarization free energy of solvation -75.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds