Wall clock time and date at job start Tue Mar 31 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99964 * 2 1 4 4 C 1.53001 * 109.47580 * 270.00103 * 3 2 1 5 5 C 1.52993 * 109.47427 * 180.02562 * 4 3 2 6 6 F 1.39898 * 109.47306 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99825 * 180.02562 * 2 1 3 8 8 O 1.21586 * 119.99704 * 179.97438 * 7 2 1 9 9 N 1.34774 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00256 * 180.02562 * 9 7 2 11 11 C 1.53349 * 109.42022 * 275.12556 * 10 9 7 12 12 C 1.53196 * 109.15353 * 178.67345 * 11 10 9 13 13 N 1.46928 * 108.89135 * 54.57497 * 12 11 10 14 14 C 1.36936 * 120.63013 * 126.29699 * 13 12 11 15 15 H 1.07999 * 120.00022 * 331.83633 * 14 13 12 16 16 C 1.38813 * 120.00005 * 151.82709 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.09585 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.09475 * 16 14 13 19 19 H 1.48494 * 109.47083 * 60.00061 * 18 16 14 20 20 H 1.48500 * 109.46851 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47024 * 300.00112 * 18 16 14 22 22 C 1.46924 * 118.73859 * 306.32337 * 13 12 11 23 23 C 1.53044 * 109.46300 * 154.99736 * 10 9 7 24 24 H 1.09001 * 109.47168 * 269.99561 * 1 2 3 25 25 H 1.08998 * 109.47154 * 30.00000 * 1 2 3 26 26 H 1.09004 * 109.47347 * 149.99844 * 1 2 3 27 27 H 1.09001 * 109.46935 * 30.00159 * 3 2 1 28 28 H 1.09002 * 109.47178 * 150.00206 * 3 2 1 29 29 H 1.09005 * 109.46628 * 300.00271 * 4 3 2 30 30 H 1.09002 * 109.46781 * 59.99859 * 4 3 2 31 31 H 1.09001 * 109.46906 * 299.99945 * 5 4 3 32 32 H 1.08992 * 109.47323 * 59.99976 * 5 4 3 33 33 H 0.97003 * 119.99662 * 359.97438 * 9 7 2 34 34 H 1.09003 * 109.46113 * 35.02623 * 10 9 7 35 35 H 1.08998 * 109.68701 * 58.70834 * 11 10 9 36 36 H 1.09000 * 109.47234 * 298.50902 * 11 10 9 37 37 H 1.08996 * 109.58345 * 294.72319 * 12 11 10 38 38 H 1.08994 * 109.58644 * 174.43734 * 12 11 10 39 39 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.58664 * 173.39523 * 22 13 12 41 41 H 1.08996 * 109.58580 * 293.67452 * 22 13 12 42 42 H 1.08992 * 109.49619 * 61.43083 * 23 10 9 43 43 H 1.08999 * 109.52313 * 301.35096 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0351 -1.4424 6 9 3.4507 3.4394 -2.7614 7 6 2.1388 -1.1672 -0.0005 8 8 3.3547 -1.1672 -0.0010 9 7 1.4650 -2.3344 -0.0016 10 6 2.1974 -3.6031 -0.0016 11 6 2.5654 -3.9794 -1.4419 12 6 3.3595 -5.2894 -1.4319 13 7 2.5814 -6.3120 -0.7193 14 6 2.3087 -7.5176 -1.3085 15 1 2.2388 -7.5896 -2.3838 16 6 2.1225 -8.6474 -0.5237 17 7 2.5249 -8.6518 0.7294 18 14 1.3006 -10.1614 -1.2461 19 1 2.0956 -10.6532 -2.3998 20 1 1.2210 -11.2229 -0.2107 21 1 -0.0688 -9.8113 -1.7018 22 6 2.1009 -6.0160 0.6373 23 6 1.3193 -4.6988 0.6072 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 2.6293 3.7949 -0.9284 32 1 4.1704 2.9044 -0.9288 33 1 0.4950 -2.3344 -0.0016 34 1 3.1074 -3.4971 0.5891 35 1 3.1724 -3.1895 -1.8842 36 1 1.6551 -4.1103 -2.0271 37 1 4.3118 -5.1355 -0.9245 38 1 3.5397 -5.6153 -2.4563 39 1 2.3944 -9.4411 1.2779 40 1 1.4485 -6.8203 0.9774 41 1 2.9505 -5.9240 1.3138 42 1 0.4208 -4.8226 0.0028 43 1 1.0391 -4.4189 1.6226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884134136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:53 Heat of formation + Delta-G solvation = -84.268021 kcal Electronic energy + Delta-G solvation = -23378.802747 eV Core-core repulsion = 19793.972229 eV Total energy + Delta-G solvation = -3584.830518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.175 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.56671 -41.37866 -39.22363 -37.04797 -36.02453 -34.30638 -33.29140 -31.73854 -31.01119 -28.04438 -27.24552 -25.99583 -23.96474 -23.66418 -22.76911 -21.20473 -20.72344 -19.24058 -18.51557 -17.68656 -17.17100 -16.90951 -16.86909 -16.45681 -15.90624 -15.76733 -15.37860 -15.26539 -15.05914 -14.79967 -14.52670 -14.35433 -14.05656 -13.94222 -13.27570 -13.20532 -13.05489 -12.99916 -12.56757 -12.53221 -12.32301 -12.20993 -12.08310 -12.03528 -11.87837 -11.56392 -11.53486 -11.38242 -11.14959 -10.55190 -10.13392 -9.52032 -8.71392 -7.87938 -5.33943 1.49164 1.50719 1.58198 1.64484 2.14519 2.52200 2.97110 3.28326 3.65584 3.74619 3.82938 3.89405 3.99007 4.05299 4.23238 4.29848 4.32732 4.33314 4.45223 4.59832 4.63766 4.64268 4.79878 4.83403 4.86004 4.90562 4.93102 5.03187 5.05305 5.14794 5.21365 5.28099 5.45958 5.56100 5.61227 5.64161 5.70466 5.94304 6.38792 6.99102 7.14254 7.58386 7.83411 8.36822 9.19205 Molecular weight = 287.18amu Principal moments of inertia in cm(-1) A = 0.034507 B = 0.003046 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.241684 B = 9189.368334 C = 9485.802365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.633 5.633 3 C 0.135 3.865 4 C -0.163 4.163 5 C 0.062 3.938 6 F -0.239 7.239 7 C 0.696 3.304 8 O -0.635 6.635 9 N -0.727 5.727 10 C 0.180 3.820 11 C -0.122 4.122 12 C 0.145 3.855 13 N -0.609 5.609 14 C -0.267 4.267 15 H 0.067 0.933 16 C -0.049 4.049 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.179 3.821 23 C -0.126 4.126 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.408 0.592 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.006 0.994 38 H 0.056 0.944 39 H 0.251 0.749 40 H 0.064 0.936 41 H -0.006 1.006 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 23.070 -0.135 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.369 5.369 3 C 0.012 3.988 4 C -0.202 4.202 5 C 0.007 3.993 6 F -0.221 7.221 7 C 0.397 3.603 8 O -0.516 6.516 9 N -0.383 5.383 10 C 0.075 3.925 11 C -0.163 4.163 12 C 0.019 3.981 13 N -0.332 5.332 14 C -0.397 4.397 15 H 0.085 0.915 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.201 1.201 22 C 0.053 3.947 23 C -0.166 4.166 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.012 0.988 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.348 22.950 -0.045 24.098 hybrid contribution -0.266 -1.249 -0.329 1.319 sum -7.615 21.701 -0.375 23.001 Atomic orbital electron populations 1.22008 0.77232 1.04514 1.03240 1.47099 1.07935 1.04049 1.77828 1.21288 0.98035 0.84025 0.95454 1.22476 1.01692 0.97031 0.99037 1.22080 1.02279 0.96581 0.78327 1.92729 1.96352 1.92161 1.40819 1.16190 0.85002 0.81487 0.77612 1.90886 1.13805 1.86960 1.59971 1.45296 1.10231 1.03829 1.78954 1.20550 0.94557 0.81472 0.95965 1.22224 1.00380 0.96910 0.96755 1.20948 0.92365 0.88765 0.96043 1.44339 1.60484 1.13372 1.15045 1.19492 1.42341 0.85944 0.91879 0.91536 1.25831 1.01418 1.00144 0.97029 1.70179 1.49307 1.29782 1.08857 0.85304 0.78952 0.78768 0.77168 1.20370 1.21984 1.20050 1.20564 0.95042 0.93918 0.85181 1.22243 0.98771 0.94827 1.00767 0.90989 0.88303 0.91139 0.86211 0.91410 0.93934 0.89792 0.87202 0.90087 0.75417 0.92755 0.92647 0.91662 0.97596 0.92518 0.93953 0.91732 0.98764 0.91126 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.20 127.77 1.30 2.04 16 2 N -0.63 -12.15 2.87 -864.92 -2.49 -14.64 16 3 C 0.14 2.06 5.41 86.38 0.47 2.53 16 4 C -0.16 -2.62 5.99 30.59 0.18 -2.44 16 5 C 0.06 0.81 7.55 71.98 0.54 1.36 16 6 F -0.24 -4.90 17.36 44.97 0.78 -4.12 16 7 C 0.70 20.36 8.24 179.06 1.48 21.83 16 8 O -0.63 -24.63 15.59 -3.99 -0.06 -24.69 16 9 N -0.73 -19.86 4.94 -457.20 -2.26 -22.12 16 10 C 0.18 6.32 2.42 45.12 0.11 6.43 16 11 C -0.12 -4.55 5.68 30.78 0.17 -4.38 16 12 C 0.15 6.47 6.51 86.36 0.56 7.04 16 13 N -0.61 -31.19 2.99 -699.11 -2.09 -33.29 16 14 C -0.27 -14.77 9.58 84.03 0.81 -13.96 16 15 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 16 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 17 N -0.94 -55.31 11.20 21.65 0.24 -55.07 16 18 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.18 8.63 5.30 86.36 0.46 9.08 16 23 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 24 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 26 H 0.07 0.72 6.36 -2.38 -0.02 0.70 16 27 H 0.12 0.84 8.07 -2.39 -0.02 0.82 16 28 H 0.07 1.35 7.42 -2.39 -0.02 1.33 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.41 8.39 6.33 -92.71 -0.59 7.81 16 34 H 0.05 2.23 7.58 -2.39 -0.02 2.22 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 38 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 39 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 40 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 41 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -73.84 346.80 3.23 -70.61 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.40 Total: 13.88 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 6.67 Total: 22.88 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.60 Total: -125.11 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.69 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -73.84 3.23 -70.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884134136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.654 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds